Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002035.1

Orthogroup ID

OG0002671

Physical Location & Seq

Genomic Coordinates Reverse (-)

73438 .. 78848

Gene Structure 5411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

atgtcaactgtagaaatggaggttttttcaaacacccaactcatcattatgaccattttgatgctggtgggtggagaggttttcacttccatgcttggacttcaaattgcaaggtccaagattcccaaatgtcatgataattacaaagttgatgtagaactcaactcttctaacgagacctccatcgatcgaattgagttagggttggtcaacctttcaccattagagagtgagaagaaaacttacattcataatggtgtaaaaacctttgacaaggatagtactactatcaagaacaagtctattaggtgtctggcctatgtagttttagtttatcttctagtggttcatataggtggttccagtttaatttcattgtacataatccttgttccaagtgcaagacaagtactcaaaaacaaaggcattgaaatccaaacctttgctgttttcaccacagtttccaccttctcaaactgtggtttcgtccccacaaacgagaacatgatcgttttcaagaacaattctgggcttctacttcttctaattcctctagtcctcctcggaaacactttatatccagtgatccttcaatttctgatatgggttttggagaaaataaccaaaagggtggagttcagttacatgttgaagaattataatgaattgggttacagtcatatgctatctggtcttcattctgttcttctacttgtcactgtcttggggttcatagcagttcagctgatactattttgtgccatggagtggaaatccgaagccatgtatggtcttagtggctatcagaaatttgtggcgtcattgtttcaaactgtaaattccaggcatactggtgagtcggttgttgatctctccatcatctctccagcaatcttggtactgtttgtctcgatgatgtatcttccaccgtatactacatttggtccagcaattaatggtggttgtcaacaaggtgatacttcagaaaaagaagatattcgaaatccgagaaagactttggtggagtctctgatgttctcacagctctcttatttaaccatatttgtcatactcatttgcatcacagagagacaaaagatgaaggaagaccccctcaacttcaatgtgttgaatgttgtagtagaagtgataagtgcatatggaaatgttgggttttcgactggctacagttgtaaacgtcgactgaattctgagggtgattgtaaagacgcaagctacggactggttggaaggtttagtacagaaggaaagttcatcctcattcttgtcatgttctttgggaggctaaagaaattcagtataaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009628 GO:0009651 GO:0015075 GO:0015077 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TrkH

Protein Analysis

442

Amino Acids

49.46

Weight (kDa)

8.61

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TrkH	PF02386	97 - 440	2.9e-33	Cation transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10310
fragaria_vesca	FvH4_4g06400 FvH4_4g06412 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420
malus_domestica	MD16G1240400.v1.1
prunus_persica	Prupe.1G066800_v2.0.a1 Prupe.1G067100_v2.0.a1
pyrus_communis	pycom16g20110
rosa_chinensis	RchiOBHm_Chr4g0398141 RchiOBHm_Chr4g0398151
rosa_laevigata	RLG00000009382 RLG00000009383 RLG00000035139
rosa_multiflora	Rmu_sc0002035.1_g000011 Rmu_sc0002378.1_g000014 Rmu_sc0002378.1_g000025 Rmu_sc0008195.1_g000011 Rmu_sc0023295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023290 Rroxscaffold_5G00343040 Rroxscaffold_5G00343070
rosa_rugosa	Rorug04G0006300 Rorug04G0006600 Rorug05G0304200
rosa_samantha	Rh4AG083400 Rh4AG083500 Rh4BG081100 Rh4BG081300 Rh4CG090400 Rh4CG090600 Rh4DG076000 Rh4DG076300 Rh5BG384700 Rh5DG398100
rosa_wichuraiana	Rw4G006930 Rw4G006940 Rw5G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	660
AccB7I	CCANNNNNTGG	1 cut(s)	768
AccI	GTMKAC	2 cut(s)	932, 1201
AclWI	GGATC	1 cut(s)	580
AcsI	RAATTY	4 cut(s)	809, 838, 1207, 1313
AcuI	CTGAAG	1 cut(s)	966
AcyI	GRCGYC	1 cut(s)	818
AfaI	GTAC	5 cut(s)	283, 380, 411, 900, 1261
AfiI	CCNNNNNNNGG	1 cut(s)	768
AflIII	ACRYGT	1 cut(s)	645
AgsI	TTSAA	9 cut(s)	30, 104, 431, 517, 593, 652, 830, 1123, 1132
AjnI	CCWGG	1 cut(s)	842
AluBI	AGCT	3 cut(s)	745, 1045, 1236
AluI	AGCT	3 cut(s)	745, 1045, 1236
Alw26I	GTCTC	4 cut(s)	170, 913, 1032, 1084
AlwI	GGATC	1 cut(s)	580
AoxI	GGCC	1 cut(s)	315
ApoI	RAATTY	4 cut(s)	809, 838, 1207, 1313
AseI	ATTAAT	1 cut(s)	954
Asp700I	GAANNNNTTC	1 cut(s)	996
AspS9I	GGNCC	2 cut(s)	114, 944
AsuHPI	GGTGA	5 cut(s)	210, 445, 866, 986, 1229
AsuII	TTCGAA	1 cut(s)	1000
AvaII	GGWCC	2 cut(s)	114, 944
BarI	GAAGNNNNNNTAC	4 cut(s)	227, 259, 1243, 1275
BbsI	GAAGAC	2 cut(s)	686, 1113
BccI	CCATC	2 cut(s)	191, 884
BciT130I	CCWGG	1 cut(s)	844
BcoDI	GTCTC	4 cut(s)	170, 913, 1032, 1084
BfaI	CTAG	2 cut(s)	341, 554
BfmI	CTRYAG	2 cut(s)	9, 1186
BmcAI	AGTACT	2 cut(s)	283, 411
Bme1390I	CCNGG	1 cut(s)	844
Bme18I	GGWCC	2 cut(s)	114, 944
BmgT120I	GGNCC	2 cut(s)	114, 944
BmiI	GGNNCC	1 cut(s)	361
BmrFI	CCNGG	1 cut(s)	844
BmsI	GCATC	2 cut(s)	51, 1089
BpiI	GAAGAC	2 cut(s)	686, 1113
BpmI	CTGGAG	1 cut(s)	870
Bpu14I	TTCGAA	1 cut(s)	1000
Bsa29I	ATCGAT	1 cut(s)	186
BsaHI	GRCGYC	1 cut(s)	818
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	562, 762
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bsc4I	CCNNNNNNNGG	1 cut(s)	768
Bse1I	ACTGG	5 cut(s)	363, 581, 856, 1186, 1248
BseBI	CCWGG	1 cut(s)	844
BseCI	ATCGAT	1 cut(s)	186
BseDI	CCNNGG	2 cut(s)	562, 762
BseGI	GGATG	1 cut(s)	1275
BseLI	CCNNNNNNNGG	1 cut(s)	768
BseMII	CTCAG	1 cut(s)	1203
BseNI	ACTGG	5 cut(s)	363, 581, 856, 1186, 1248
BseRI	GAGGAG	1 cut(s)	551
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	1 cut(s)	317
BshVI	ATCGAT	1 cut(s)	186
BsiEI	CGRYCG	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	1 cut(s)	768
BsmAI	GTCTC	4 cut(s)	170, 913, 1032, 1084
BsmFI	GGGAC	1 cut(s)	473
BsnI	GGCC	1 cut(s)	317
Bso31I	GGTCTC	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	1000
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	4 cut(s)	187, 507, 585, 868
Bsp19I	CCATGG	1 cut(s)	762
BspANI	GGCC	1 cut(s)	317
BspCNI	CTCAG	1 cut(s)	1204
BspDI	ATCGAT	1 cut(s)	186
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	361
BspPI	GGATC	1 cut(s)	580
BspT104I	TTCGAA	1 cut(s)	1000
BspTNI	GGTCTC	1 cut(s)	170
BsrGI	TGTACA	1 cut(s)	378
BsrI	ACTGG	5 cut(s)	363, 581, 856, 1186, 1248
BssECI	CCNNGG	2 cut(s)	562, 762
BssMI	GATC	4 cut(s)	187, 507, 585, 868
BssNAI	GTATAC	1 cut(s)	933
BssNI	GRCGYC	1 cut(s)	818
BssT1I	CCWWGG	1 cut(s)	762
Bst1107I	GTATAC	1 cut(s)	933
Bst2UI	CCWGG	1 cut(s)	844
Bst4CI	ACNGT	9 cut(s)	10, 460, 479, 677, 721, 835, 903, 930, 1190
Bst6I	CTCTTC	1 cut(s)	172
BstACI	GRCGYC	1 cut(s)	818
BstAUI	TGTACA	1 cut(s)	378
BstBI	TTCGAA	1 cut(s)	1000
BstC8I	GCNNGC	1 cut(s)	1234
BstDEI	CTNAG	2 cut(s)	794, 1212
BstDSI	CCRYGG	1 cut(s)	762
BstF5I	GGATG	1 cut(s)	1275
BstKTI	GATC	4 cut(s)	190, 510, 588, 871
BstMAI	GTCTC	4 cut(s)	170, 913, 1032, 1084
BstMBI	GATC	4 cut(s)	187, 507, 585, 868
BstMCI	CGRYCG	1 cut(s)	190
BstNI	CCWGG	1 cut(s)	844
BstNSI	RCATGY	1 cut(s)	649
BstSCI	CCNGG	1 cut(s)	842
BstSFI	CTRYAG	2 cut(s)	9, 1186
BstV2I	GAAGAC	2 cut(s)	686, 1113
BstXI	CCANNNNNNTGG	1 cut(s)	631
BstZ17I	GTATAC	1 cut(s)	933
Bsu15I	ATCGAT	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	317
BsuTUI	ATCGAT	1 cut(s)	186
BtgI	CCRYGG	1 cut(s)	762
BtsCI	GGATG	1 cut(s)	1275
BtsIMutI	CAGTG	2 cut(s)	588, 717
Cac8I	GCNNGC	1 cut(s)	1234
CciI	TCATGA	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	114, 944
ClaI	ATCGAT	1 cut(s)	186
CseI	GACGC	2 cut(s)	807, 1238
Csp6I	GTAC	5 cut(s)	282, 379, 410, 899, 1260
CviAII	CATG	7 cut(s)	91, 134, 505, 646, 763, 784, 1291
CviJI	RGCY	9 cut(s)	317, 532, 745, 782, 801, 1045, 1185, 1236, 1306
CviKI_1	RGCY	9 cut(s)	317, 532, 745, 782, 801, 1045, 1185, 1236, 1306
CviQI	GTAC	5 cut(s)	282, 379, 410, 899, 1260
DdeI	CTNAG	2 cut(s)	794, 1212
DpnI	GATC	4 cut(s)	189, 509, 587, 870
DpnII	GATC	4 cut(s)	187, 507, 585, 868
Eam1104I	CTCTTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	762
Eco31I	GGTCTC	1 cut(s)	170
Eco47I	GGWCC	2 cut(s)	114, 944
Eco57I	CTGAAG	1 cut(s)	966
EcoRI	GAATTC	1 cut(s)	1207
EcoRII	CCWGG	1 cut(s)	842
EcoT14I	CCWWGG	1 cut(s)	762
ErhI	CCWWGG	1 cut(s)	762
FaeI	CATG	7 cut(s)	94, 137, 508, 649, 766, 787, 1294
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	7 cut(s)	90, 133, 504, 645, 762, 783, 1290
FauNDI	CATATG	2 cut(s)	681, 1159
FblI	GTMKAC	2 cut(s)	932, 1201
FokI	GGATG	1 cut(s)	1262
FspBI	CTAG	2 cut(s)	341, 554
GsuI	CTGGAG	1 cut(s)	870
HaeIII	GGCC	1 cut(s)	317
HgaI	GACGC	2 cut(s)	807, 1238
Hin1I	GRCGYC	1 cut(s)	818
Hin1II	CATG	7 cut(s)	94, 137, 508, 649, 766, 787, 1294
HincII	GTYRAC	4 cut(s)	6, 211, 968, 1202
HindII	GTYRAC	4 cut(s)	6, 211, 968, 1202
HinfI	GANTC	3 cut(s)	121, 857, 1025
HphI	GGTGA	5 cut(s)	210, 445, 866, 986, 1229
Hpy166II	GTNNAC	6 cut(s)	6, 211, 933, 968, 1196, 1202
Hpy188I	TCNGA	8 cut(s)	566, 600, 778, 807, 985, 1008, 1032, 1213
Hpy188III	TCNNGA	4 cut(s)	134, 292, 517, 910
Hpy8I	GTNNAC	6 cut(s)	6, 211, 933, 968, 1196, 1202
Hpy99I	CGWCG	1 cut(s)	1203
HpyAV	CCTTC	5 cut(s)	478, 599, 1096, 1245, 1259
HpyCH4III	ACNGT	9 cut(s)	10, 460, 479, 677, 721, 835, 903, 930, 1190
HpyCH4IV	ACGT	1 cut(s)	1198
HpyCH4V	TGCA	4 cut(s)	110, 401, 1080, 1157
HpyF3I	CTNAG	2 cut(s)	794, 1212
HpySE526I	ACGT	1 cut(s)	1198
Hsp92I	GRCGYC	1 cut(s)	818
Hsp92II	CATG	7 cut(s)	94, 137, 508, 649, 766, 787, 1294
Kzo9I	GATC	4 cut(s)	187, 507, 585, 868
LweI	GCATC	2 cut(s)	51, 1089
MaeI	CTAG	2 cut(s)	341, 554
MaeII	ACGT	1 cut(s)	1198
MaeIII	GTNAC	3 cut(s)	641, 671, 715
MalI	GATC	4 cut(s)	189, 509, 587, 870
MboI	GATC	4 cut(s)	187, 507, 585, 868
MlyI	GAGTC	2 cut(s)	866, 1034
MmeI	TCCRAC	1 cut(s)	1228
MroXI	GAANNNNTTC	1 cut(s)	996
MseI	TTAA	3 cut(s)	368, 954, 1055
MslI	CAYNNNNRTG	6 cut(s)	47, 59, 89, 255, 354, 852
MspA1I	CMGCKG	1 cut(s)	745
MspR9I	CCNGG	1 cut(s)	844
MvaI	CCWGG	1 cut(s)	844
NcoI	CCATGG	1 cut(s)	762
NdeI	CATATG	2 cut(s)	681, 1159
NdeII	GATC	4 cut(s)	187, 507, 585, 868
NlaIII	CATG	7 cut(s)	94, 137, 508, 649, 766, 787, 1294
NlaIV	GGNNCC	1 cut(s)	361
NmuCI	GTSAC	1 cut(s)	715
NspI	RCATGY	1 cut(s)	649
NspV	TTCGAA	1 cut(s)	1000
PagI	TCATGA	1 cut(s)	133
PciI	ACATGT	1 cut(s)	645
PdmI	GAANNNNTTC	1 cut(s)	996
PfeI	GAWTC	1 cut(s)	121
PflMI	CCANNNNNTGG	1 cut(s)	768
Ple19I	CGATCG	1 cut(s)	190
PleI	GAGTC	2 cut(s)	865, 1033
PpsI	GAGTC	2 cut(s)	865, 1033
PscI	ACATGT	1 cut(s)	645
PshBI	ATTAAT	1 cut(s)	954
PsiI	TTATAA	1 cut(s)	660
Psp6I	CCWGG	1 cut(s)	842
PspGI	CCWGG	1 cut(s)	842
PspN4I	GGNNCC	1 cut(s)	361
PspPI	GGNCC	2 cut(s)	114, 944
PvuI	CGATCG	1 cut(s)	190
PvuII	CAGCTG	1 cut(s)	745
RsaI	GTAC	5 cut(s)	283, 380, 411, 900, 1261
RsaNI	GTAC	5 cut(s)	282, 379, 410, 899, 1260
RseI	CAYNNNNRTG	6 cut(s)	47, 59, 89, 255, 354, 852
SalI	GTCGAC	1 cut(s)	1200
SaqAI	TTAA	3 cut(s)	368, 954, 1055
Sau3AI	GATC	4 cut(s)	187, 507, 585, 868
Sau96I	GGNCC	2 cut(s)	114, 944
ScaI	AGTACT	2 cut(s)	283, 411
SchI	GAGTC	2 cut(s)	866, 1034
ScrFI	CCNGG	1 cut(s)	844
SfaNI	GCATC	2 cut(s)	51, 1089
SfcI	CTRYAG	2 cut(s)	9, 1186
SfuI	TTCGAA	1 cut(s)	1000
SinI	GGWCC	2 cut(s)	114, 944
SmiMI	CAYNNNNRTG	6 cut(s)	47, 59, 89, 255, 354, 852
SspMI	CTAG	2 cut(s)	341, 554
StyD4I	CCNGG	1 cut(s)	842
StyI	CCWWGG	1 cut(s)	762
TaaI	ACNGT	9 cut(s)	10, 460, 479, 677, 721, 835, 903, 930, 1190
TaiI	ACGT	1 cut(s)	1201
TaqI	TCGA	6 cut(s)	186, 190, 911, 1000, 1178, 1201
TatI	WGTACW	4 cut(s)	281, 378, 409, 1259
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	3 cut(s)	368, 954, 1055
Tru9I	TTAA	3 cut(s)	368, 954, 1055
TscAI	CASTG	2 cut(s)	588, 724
TseFI	GTSAC	1 cut(s)	715
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	8 cut(s)	239, 338, 363, 678, 686, 721, 1115, 1264
TspGWI	ACGGA	1 cut(s)	1254
TspRI	CASTG	2 cut(s)	588, 724
Van91I	CCANNNNNTGG	1 cut(s)	768
VpaK11BI	GGWCC	2 cut(s)	114, 944
VspI	ATTAAT	1 cut(s)	954
XapI	RAATTY	4 cut(s)	809, 838, 1207, 1313
XceI	RCATGY	1 cut(s)	649
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XmiI	GTMKAC	2 cut(s)	932, 1201
XmnI	GAANNNNTTC	1 cut(s)	996
XspI	CTAG	2 cut(s)	341, 554
ZrmI	AGTACT	2 cut(s)	283, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.