Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002245.1

Orthogroup ID

OG0003249

Physical Location & Seq

Genomic Coordinates Reverse (-)

214415 .. 216594

Gene Structure 2180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgaccaagatcattaaggagatgttgcctccacatgtacgcgtcgcaagagatgctcaagatcttctcatcgagtgttgtgttgaagatcttgctggcttttccttccggacaacgcctatgaatctatcaaagaaagtgatggtcttcttctcttctggcaactcagtaaaattccactctgaccttcttagatacgttaatgtggattgctttgatatccatggaaagcaaaagcagcagaagaggacaggtactttttttgactactgcaaagcagagaaaataatcttactttgtactgaggttggtgctcgtggaccgggtatccctgccgtggactggattatgcagtgtgatcctccagatgaacccaaggaatatatccacaaggctggtcgaacagctcgtggggaaggtggaaaaggaaaagcactacttttcctcagtcccgaagagttgcaggctatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

157

Amino Acids

17.62

Weight (kDa)

8.2

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	44 - 138	5.9e-17	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18600
fragaria_vesca	FvH4_5g12870
malus_domestica	MD05G1177700.v1.1 MD06G1209500.v1.1 MD14G1220200.v1.1 MD15G1015500.v1.1
prunus_persica	Prupe.5G214700_v2.0.a1 Prupe.6G096100_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G097300_v2.0.a1
pyrus_communis	pycom05g16360 pycom05g16400 pycom05g16410 pycom06g18710 pycom14g18230 pycom15g01320
rosa_chinensis	RchiOBHm_Chr5g0083351 RchiOBHm_Chr5g0083361 RchiOBHm_Chr7g0184361
rosa_laevigata	RLG00000004982 RLG00000037030
rosa_multiflora	Rmu_sc0001444.1_g000013 Rmu_sc0001557.1_g000022 Rmu_sc0002245.1_g000045
rosa_roxburghii	Rroxscaffold_1G00001130 Rroxscaffold_3G00269690
rosa_samantha	Rh5AG533800 Rh5BG561600 Rh5CG583900 Rh5CG584000 Rh7AG080700 Rh7BG066500 Rh7CG066800 Rh7DG066500
rosa_wichuraiana	Rw5G049900 Rw7G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	42
AccIII	TCCGGA	1 cut(s)	108
AclWI	GGATC	1 cut(s)	353
AcsI	RAATTY	1 cut(s)	173
AfaI	GTAC	3 cut(s)	39, 256, 301
AfiI	CCNNNNNNNGG	2 cut(s)	337, 342
AflIII	ACRYGT	2 cut(s)	34, 40
AgsI	TTSAA	1 cut(s)	86
AluBI	AGCT	1 cut(s)	407
AluI	AGCT	1 cut(s)	407
Alw21I	GWGCWC	1 cut(s)	316
AlwI	GGATC	1 cut(s)	353
Aor13HI	TCCGGA	1 cut(s)	108
ApeKI	GCWGC	1 cut(s)	238
ApoI	RAATTY	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	320
AsuC2I	CCSGG	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	320
BauI	CACGAG	2 cut(s)	315, 408
BbsI	GAAGAC	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	316
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	1 cut(s)	136
BceAI	ACGGC	1 cut(s)	320
BciVI	GTATCC	1 cut(s)	338
BcnI	CCSGG	1 cut(s)	324
BfuI	GTATCC	1 cut(s)	338
BglII	AGATCT	2 cut(s)	61, 88
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme1390I	CCNGG	1 cut(s)	324
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	320
BmrFI	CCNGG	1 cut(s)	324
BmsI	GCATC	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	139
BpmI	CTGGAG	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	42
BpuMI	CCSGG	1 cut(s)	324
BsaJI	CCNNGG	3 cut(s)	223, 336, 375
BsaWI	WCCGGW	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 342
Bse1I	ACTGG	1 cut(s)	347
BseAI	TCCGGA	1 cut(s)	108
BseDI	CCNNGG	3 cut(s)	223, 336, 375
BseLI	CCNNNNNNNGG	2 cut(s)	337, 342
BseMII	CTCAG	3 cut(s)	180, 294, 460
BseNI	ACTGG	1 cut(s)	347
BseXI	GCAGC	1 cut(s)	250
Bsh1236I	CGCG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	316
BsiSI	CCGG	2 cut(s)	109, 323
BslFI	GGGAC	1 cut(s)	435
BslI	CCNNNNNNNGG	2 cut(s)	337, 342
BsmFI	GGGAC	1 cut(s)	435
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp13I	TCCGGA	1 cut(s)	108
Bsp143I	GATC	4 cut(s)	9, 61, 88, 358
Bsp19I	CCATGG	1 cut(s)	223
BspCNI	CTCAG	3 cut(s)	179, 295, 459
BspEI	TCCGGA	1 cut(s)	108
BspFNI	CGCG	1 cut(s)	42
BspPI	GGATC	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	347
BssECI	CCNNGG	3 cut(s)	223, 336, 375
BssMI	GATC	4 cut(s)	9, 61, 88, 358
BssSI	CACGAG	2 cut(s)	315, 408
BssT1I	CCWWGG	2 cut(s)	223, 375
Bst2BI	CACGAG	2 cut(s)	315, 408
Bst6I	CTCTTC	3 cut(s)	160, 239, 450
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	97, 465
BstDEI	CTNAG	4 cut(s)	166, 191, 303, 446
BstDSI	CCRYGG	2 cut(s)	223, 336
BstFNI	CGCG	1 cut(s)	42
BstKTI	GATC	4 cut(s)	12, 64, 91, 361
BstMBI	GATC	4 cut(s)	9, 61, 88, 358
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 238
BstNSI	RCATGY	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	322
BstUI	CGCG	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	250
BstV2I	GAAGAC	1 cut(s)	139
BstX2I	RGATCY	2 cut(s)	61, 88
BstXI	CCANNNNNNTGG	1 cut(s)	395
BstYI	RGATCY	2 cut(s)	61, 88
BsuI	GTATCC	1 cut(s)	338
BtgI	CCRYGG	2 cut(s)	223, 336
BtsI	GCAGTG	1 cut(s)	359
BtsIMutI	CAGTG	1 cut(s)	359
Cac8I	GCNNGC	2 cut(s)	97, 465
Cfr13I	GGNCC	1 cut(s)	320
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	3 cut(s)	38, 255, 300
CviAII	CATG	2 cut(s)	35, 224
CviJI	RGCY	4 cut(s)	99, 395, 407, 467
CviKI_1	RGCY	4 cut(s)	99, 395, 407, 467
CviQI	GTAC	3 cut(s)	38, 255, 300
DdeI	CTNAG	4 cut(s)	166, 191, 303, 446
DpnI	GATC	4 cut(s)	11, 63, 90, 360
DpnII	GATC	4 cut(s)	9, 61, 88, 358
Eam1104I	CTCTTC	3 cut(s)	160, 239, 450
EarI	CTCTTC	3 cut(s)	160, 239, 450
Eco130I	CCWWGG	2 cut(s)	223, 375
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	320
EcoRV	GATATC	1 cut(s)	220
EcoT14I	CCWWGG	2 cut(s)	223, 375
ErhI	CCWWGG	2 cut(s)	223, 375
FaeI	CATG	2 cut(s)	38, 227
FaiI	YATR	5 cut(s)	36, 122, 225, 350, 384
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FaqI	GGGAC	1 cut(s)	435
FatI	CATG	2 cut(s)	34, 223
Fnu4HI	GCNGC	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	239
GluI	GCNGC	1 cut(s)	239
GsuI	CTGGAG	1 cut(s)	348
HapII	CCGG	2 cut(s)	109, 323
HgaI	GACGC	1 cut(s)	31
Hin1II	CATG	2 cut(s)	38, 227
HinfI	GANTC	1 cut(s)	124
HpaII	CCGG	2 cut(s)	109, 323
Hpy166II	GTNNAC	2 cut(s)	320, 340
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	4 cut(s)	59, 109, 365, 452
Hpy8I	GTNNAC	2 cut(s)	320, 340
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	3 cut(s)	115, 197, 410
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	3 cut(s)	273, 352, 463
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 238
HpyF3I	CTNAG	4 cut(s)	166, 191, 303, 446
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	2 cut(s)	38, 227
Kpn2I	TCCGGA	1 cut(s)	108
Kzo9I	GATC	4 cut(s)	9, 61, 88, 358
Lsp1109I	GCAGC	1 cut(s)	250
LweI	GCATC	1 cut(s)	43
MaeII	ACGT	1 cut(s)	198
MalI	GATC	4 cut(s)	11, 63, 90, 360
MboI	GATC	4 cut(s)	9, 61, 88, 358
MboII	GAAGA	7 cut(s)	56, 98, 139, 142, 147, 256, 467
MflI	RGATCY	2 cut(s)	61, 88
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	1 cut(s)	173
MluI	ACGCGT	1 cut(s)	40
MnlI	CCTC	5 cut(s)	39, 240, 298, 372, 455
MroI	TCCGGA	1 cut(s)	108
MseI	TTAA	2 cut(s)	15, 201
MspI	CCGG	2 cut(s)	109, 323
MspR9I	CCNGG	1 cut(s)	324
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	2 cut(s)	53, 238
NciI	CCSGG	1 cut(s)	324
NcoI	CCATGG	1 cut(s)	223
NdeII	GATC	4 cut(s)	9, 61, 88, 358
NlaIII	CATG	2 cut(s)	38, 227
NspI	RCATGY	1 cut(s)	38
PciI	ACATGT	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	240
PscI	ACATGT	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	320
PsuI	RGATCY	2 cut(s)	61, 88
RsaI	GTAC	3 cut(s)	39, 256, 301
RsaNI	GTAC	3 cut(s)	38, 255, 300
SaqAI	TTAA	2 cut(s)	15, 201
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	4 cut(s)	9, 61, 88, 358
Sau96I	GGNCC	1 cut(s)	320
ScrFI	CCNGG	1 cut(s)	324
SduI	GDGCHC	1 cut(s)	316
SetI	ASST	6 cut(s)	189, 201, 256, 309, 409, 421
SfaNI	GCATC	1 cut(s)	43
SinI	GGWCC	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
Sse9I	AATT	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	322
StyI	CCWWGG	2 cut(s)	223, 375
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	2 cut(s)	72, 400
TasI	AATT	1 cut(s)	173
TatI	WGTACW	1 cut(s)	299
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	2 cut(s)	15, 201
Tru9I	TTAA	2 cut(s)	15, 201
TscAI	CASTG	1 cut(s)	359
TseI	GCWGC	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	137, 384
TspRI	CASTG	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	320
XapI	RAATTY	1 cut(s)	173
XceI	RCATGY	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.