Rmu_sc0002521.1_g000047

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002521.1
OG0002418
Physical Location & Seq
Reverse (-)
198512 .. 199869
1358 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1104 bp
atggaagctctgctagcattcaagcaagaactagtcaaagaagctgatcgacaaggccggactcctctctactatgcagcatccctaggtgaccacagaacagttcagcgattactagaacttgatacttctactgcatatgtcttggataaagatggtcgttcaccaattcatgttgcagctaggaatggtcatactggtgtgattagagagattatccaacattgcccagattccggagaacttattgacccttatggacagaatgctcttcatattgctatttccagtggacaagctaatgttgtcacatatatattagaaacaccagaactagaagggttgataaatcagtctgatattgatggaaacacgcctttgcatctagcagcgattgcaagaaaaacttggattctttggtacttgatgtgggatggaagagtaaatgaaagatccaagaacaaatatggccaaacagcatttgacaatgataggtcaatgaagaaatctagtattacatctcccatgatttcagcaagagcggaccacgaagaagcaatttcagcaatgcatacttacacgaaaatgggtcagacccttttaacggttacaacactcattacaactgtaacatttacagccgcattcacaatgcctggaggctacaacaatgatgcaggctcatcagatcgagggctagctcttctacagtcaagcaaatatctaaaacatttcataatcttcgacgctgttgctatgacttgctcaattagtgcagcttgcctcctattttggggagctgttaaaagcaaggggtgctatctttactatttcacaagtgccgctgctcttacatatattgctctactatcgactgcaggagcattcacaacaggaattaaagctgtgctgccccatcagcaatacgtggacatcatgatactgggagtggatgttgcttttcacatcagtaccttcttgtttctttttcatttggttaaaatgttttccatccctgaagcctgtagactcttgttttctcatcactgtatcaagtccaaaagggctaagataccaaaatggagaagaagtacatatttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

367

Amino Acids

40.82

Weight (kDa)

8.75

Isoelectric Point (pI)

36.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_4 PF13637 23 - 69 7.9e-07 Ankyrin repeats (many copies)
Ank_2 PF12796 48 - 108 1e-11 Ankyrin repeats (3 copies)
Ank_5 PF13857 81 - 130 1.4e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 84 - 143 6e-09 Ankyrin repeats (3 copies)
PGG PF13962 192 - 301 2.6e-23 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 542
AccI GTMKAC 1 cut(s) 1027
AccIII TCCGGA 1 cut(s) 236
AciI CCGC 3 cut(s) 542, 642, 843
AclWI GGATC 1 cut(s) 447
AcoI YGGCCR 1 cut(s) 469
AcuI CTGAAG 1 cut(s) 1038
AfaI GTAC 3 cut(s) 422, 973, 1093
AfiI CCNNNNNNNGG 3 cut(s) 236, 604, 793
AgsI TTSAA 1 cut(s) 22
AhlI ACTAGT 1 cut(s) 31
AjnI CCWGG 1 cut(s) 655
AluBI AGCT 8 cut(s) 8, 44, 182, 299, 701, 779, 800, 905
AluI AGCT 8 cut(s) 8, 44, 182, 299, 701, 779, 800, 905
AlwI GGATC 1 cut(s) 447
Aor13HI TCCGGA 1 cut(s) 236
AoxI GGCC 2 cut(s) 55, 469
ApeKI GCWGC 6 cut(s) 77, 179, 389, 776, 845, 910
AspA2I CCTAGG 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 544
AsuHPI GGTGA 2 cut(s) 101, 156
AsuNHI GCTAGC 2 cut(s) 13, 697
AvaII GGWCC 1 cut(s) 544
AvrII CCTAGG 1 cut(s) 85
BaeI ACNNNNGTAYC 2 cut(s) 955, 988
BalI TGGCCA 1 cut(s) 471
BbvI GCAGC 6 cut(s) 89, 191, 401, 788, 832, 897
BccI CCATC 5 cut(s) 149, 359, 428, 924, 1019
BcgI CGANNNNNNTGC 2 cut(s) 734, 768
BciT130I CCWGG 1 cut(s) 657
BcuI ACTAGT 1 cut(s) 31
BfaI CTAG 9 cut(s) 14, 32, 86, 116, 183, 335, 386, 510, 698
BfmI CTRYAG 3 cut(s) 707, 876, 1024
BisI GCNGC 8 cut(s) 78, 180, 390, 642, 777, 843, 846, 911
BlnI CCTAGG 1 cut(s) 85
BlsI GCNGC 8 cut(s) 79, 181, 391, 643, 778, 844, 847, 912
Bme1390I CCNGG 1 cut(s) 657
Bme18I GGWCC 1 cut(s) 544
BmgT120I GGNCC 1 cut(s) 544
BmrFI CCNGG 1 cut(s) 657
BmrI ACTGGG 1 cut(s) 953
BmsI GCATC 3 cut(s) 89, 391, 664
BmtI GCTAGC 2 cut(s) 17, 701
BmuI ACTGGG 1 cut(s) 953
BpmI CTGGAG 1 cut(s) 678
BsaAI YACGTR 1 cut(s) 928
BsaJI CCNNGG 1 cut(s) 85
BsaWI WCCGGW 1 cut(s) 236
BsaXI ACNNNNNCTCC 3 cut(s) 939, 969, 1075
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 604, 793
Bse1I ACTGG 3 cut(s) 202, 288, 948
Bse3DI GCAATG 2 cut(s) 223, 573
BseAI TCCGGA 1 cut(s) 236
BseBI CCWGG 1 cut(s) 657
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 4 cut(s) 80, 439, 958, 1011
BseLI CCNNNNNNNGG 3 cut(s) 236, 604, 793
BseMI GCAATG 2 cut(s) 223, 573
BseNI ACTGG 3 cut(s) 202, 288, 948
BseRI GAGGAG 1 cut(s) 54
BseXI GCAGC 6 cut(s) 89, 191, 401, 788, 832, 897
BsgI GTGCAG 1 cut(s) 795
BshFI GGCC 2 cut(s) 57, 471
BsiSI CCGG 2 cut(s) 58, 237
BslI CCNNNNNNNGG 3 cut(s) 236, 604, 793
BsmI GAATGC 4 cut(s) 17, 271, 644, 884
BsnI GGCC 2 cut(s) 57, 471
Bsp13I TCCGGA 1 cut(s) 236
Bsp143I GATC 3 cut(s) 46, 452, 688
BspACI CCGC 3 cut(s) 542, 642, 843
BspANI GGCC 2 cut(s) 57, 471
BspEI TCCGGA 1 cut(s) 236
BspHI TCATGA 1 cut(s) 936
BspMAI CTGCAG 1 cut(s) 880
BspOI GCTAGC 2 cut(s) 17, 701
BspPI GGATC 1 cut(s) 447
BspQI GCTCTTC 2 cut(s) 276, 708
BsrBI CCGCTC 1 cut(s) 542
BsrDI GCAATG 2 cut(s) 223, 573
BsrI ACTGG 3 cut(s) 202, 288, 948
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 3 cut(s) 46, 452, 688
BssT1I CCWWGG 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 657
Bst4CI ACNGT 5 cut(s) 103, 607, 628, 711, 1049
Bst6I CTCTTC 3 cut(s) 276, 433, 708
BstAPI GCANNNNNTGC 2 cut(s) 395, 816
BstBAI YACGTR 1 cut(s) 928
BstC8I GCNNGC 4 cut(s) 15, 679, 699, 781
BstDEI CTNAG 1 cut(s) 1068
BstEII GGTNACC 1 cut(s) 89
BstF5I GGATG 4 cut(s) 80, 439, 958, 1011
BstKTI GATC 3 cut(s) 49, 455, 691
BstMBI GATC 3 cut(s) 46, 452, 688
BstMWI GCNNNNNNNGC 5 cut(s) 14, 395, 563, 816, 919
BstNI CCWGG 1 cut(s) 657
BstPI GGTNACC 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 655
BstSFI CTRYAG 3 cut(s) 707, 876, 1024
BstV1I GCAGC 6 cut(s) 89, 191, 401, 788, 832, 897
BstX2I RGATCY 1 cut(s) 452
BstYI RGATCY 1 cut(s) 452
BsuRI GGCC 2 cut(s) 57, 471
BtsCI GGATG 4 cut(s) 80, 439, 958, 1011
BtsIMutI CAGTG 2 cut(s) 295, 1045
Cac8I GCNNGC 4 cut(s) 15, 679, 699, 781
CciI TCATGA 1 cut(s) 936
Cfr13I GGNCC 1 cut(s) 544
CseI GACGC 1 cut(s) 755
Csp6I GTAC 3 cut(s) 421, 972, 1092
CviAII CATG 3 cut(s) 173, 526, 937
CviQI GTAC 3 cut(s) 421, 972, 1092
DdeI CTNAG 1 cut(s) 1068
DpnI GATC 3 cut(s) 48, 454, 690
DpnII GATC 3 cut(s) 46, 452, 688
EaeI YGGCCR 1 cut(s) 469
Eam1104I CTCTTC 3 cut(s) 276, 433, 708
EarI CTCTTC 3 cut(s) 276, 433, 708
Eco130I CCWWGG 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 544
Eco57I CTGAAG 1 cut(s) 1038
Eco91I GGTNACC 1 cut(s) 89
EcoO65I GGTNACC 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 655
EcoT14I CCWWGG 1 cut(s) 85
EcoT22I ATGCAT 1 cut(s) 573
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 3 cut(s) 176, 529, 940
FalI AAGNNNNNCTT 2 cut(s) 391, 423
FatI CATG 3 cut(s) 172, 525, 936
FauNDI CATATG 1 cut(s) 139
FblI GTMKAC 1 cut(s) 1027
Fnu4HI GCNGC 8 cut(s) 78, 180, 390, 642, 777, 843, 846, 911
FokI GGATG 4 cut(s) 67, 446, 965, 998
Fsp4HI GCNGC 8 cut(s) 78, 180, 390, 642, 777, 843, 846, 911
FspBI CTAG 9 cut(s) 14, 32, 86, 116, 183, 335, 386, 510, 698
GluI GCNGC 8 cut(s) 78, 180, 390, 642, 777, 843, 846, 911
GsuI CTGGAG 1 cut(s) 678
HaeIII GGCC 2 cut(s) 57, 471
HapII CCGG 2 cut(s) 58, 237
HgaI GACGC 1 cut(s) 755
Hin1II CATG 3 cut(s) 176, 529, 940
HinfI GANTC 4 cut(s) 61, 233, 412, 1029
HpaII CCGG 2 cut(s) 58, 237
HphI GGTGA 2 cut(s) 101, 156
Hpy166II GTNNAC 4 cut(s) 164, 293, 931, 1028
Hpy188I TCNGA 3 cut(s) 358, 594, 688
Hpy188III TCNNGA 2 cut(s) 237, 937
Hpy8I GTNNAC 4 cut(s) 164, 293, 931, 1028
Hpy99I CGWCG 1 cut(s) 749
HpyAV CCTTC 2 cut(s) 332, 985
HpyCH4III ACNGT 5 cut(s) 103, 607, 628, 711, 1049
HpyCH4IV ACGT 1 cut(s) 927
HpyCH4V TGCA 9 cut(s) 77, 137, 179, 382, 398, 571, 677, 776, 878
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 395, 563, 816, 919
HpyF3I CTNAG 1 cut(s) 1068
HpySE526I ACGT 1 cut(s) 927
Hsp92II CATG 3 cut(s) 176, 529, 940
Kpn2I TCCGGA 1 cut(s) 236
Kzo9I GATC 3 cut(s) 46, 452, 688
LguI GCTCTTC 2 cut(s) 276, 708
LmnI GCTCC 2 cut(s) 797, 881
Lsp1109I GCAGC 6 cut(s) 89, 191, 401, 788, 832, 897
LweI GCATC 3 cut(s) 89, 391, 664
MaeI CTAG 9 cut(s) 14, 32, 86, 116, 183, 335, 386, 510, 698
MaeII ACGT 1 cut(s) 927
MaeIII GTNAC 4 cut(s) 89, 307, 607, 628
MalI GATC 3 cut(s) 48, 454, 690
MbiI CCGCTC 1 cut(s) 542
MboI GATC 3 cut(s) 46, 452, 688
MboII GAAGA 7 cut(s) 263, 450, 514, 563, 695, 733, 1098
MflI RGATCY 1 cut(s) 452
MlsI TGGCCA 1 cut(s) 471
MluCI AATT 4 cut(s) 168, 558, 768, 897
MluNI TGGCCA 1 cut(s) 471
MlyI GAGTC 2 cut(s) 55, 1023
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 4 cut(s) 75, 653, 686, 794
Mox20I TGGCCA 1 cut(s) 471
Mph1103I ATGCAT 1 cut(s) 573
MroI TCCGGA 1 cut(s) 236
MscI TGGCCA 1 cut(s) 471
MseI TTAA 4 cut(s) 602, 804, 900, 999
MslI CAYNNNNRTG 2 cut(s) 198, 584
Msp20I TGGCCA 1 cut(s) 471
MspA1I CMGCKG 1 cut(s) 845
MspI CCGG 2 cut(s) 58, 237
MspR9I CCNGG 1 cut(s) 657
Mva1269I GAATGC 4 cut(s) 17, 271, 644, 884
MvaI CCWGG 1 cut(s) 657
MwoI GCNNNNNNNGC 5 cut(s) 14, 395, 563, 816, 919
NdeI CATATG 1 cut(s) 139
NdeII GATC 3 cut(s) 46, 452, 688
NheI GCTAGC 2 cut(s) 13, 697
NlaIII CATG 3 cut(s) 176, 529, 940
NmuCI GTSAC 2 cut(s) 89, 307
NsiI ATGCAT 1 cut(s) 573
PagI TCATGA 1 cut(s) 936
PciSI GCTCTTC 2 cut(s) 276, 708
PctI GAATGC 4 cut(s) 17, 271, 644, 884
PfeI GAWTC 2 cut(s) 233, 412
PkrI GCNGC 8 cut(s) 79, 181, 391, 643, 778, 844, 847, 912
PleI GAGTC 2 cut(s) 55, 1023
PpsI GAGTC 2 cut(s) 55, 1023
Ppu21I YACGTR 1 cut(s) 928
Psp6I CCWGG 1 cut(s) 655
PspEI GGTNACC 1 cut(s) 89
PspGI CCWGG 1 cut(s) 655
PspPI GGNCC 1 cut(s) 544
PstI CTGCAG 1 cut(s) 880
PsuI RGATCY 1 cut(s) 452
RsaI GTAC 3 cut(s) 422, 973, 1093
RsaNI GTAC 3 cut(s) 421, 972, 1092
RseI CAYNNNNRTG 2 cut(s) 198, 584
SapI GCTCTTC 2 cut(s) 276, 708
SaqAI TTAA 4 cut(s) 602, 804, 900, 999
SatI GCNGC 8 cut(s) 78, 180, 390, 642, 777, 843, 846, 911
Sau3AI GATC 3 cut(s) 46, 452, 688
Sau96I GGNCC 1 cut(s) 544
SchI GAGTC 2 cut(s) 55, 1023
ScrFI CCNGG 1 cut(s) 657
SfaNI GCATC 3 cut(s) 89, 391, 664
SfcI CTRYAG 3 cut(s) 707, 876, 1024
SinI GGWCC 1 cut(s) 544
SmiMI CAYNNNNRTG 2 cut(s) 198, 584
SpeI ACTAGT 1 cut(s) 31
Sse9I AATT 4 cut(s) 168, 558, 768, 897
SsiI CCGC 3 cut(s) 542, 642, 843
SspMI CTAG 9 cut(s) 14, 32, 86, 116, 183, 335, 386, 510, 698
StyD4I CCNGG 1 cut(s) 655
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 5 cut(s) 103, 607, 628, 711, 1049
TaiI ACGT 1 cut(s) 930
TaqI TCGA 4 cut(s) 49, 691, 744, 872
TasI AATT 4 cut(s) 168, 558, 768, 897
TatI WGTACW 1 cut(s) 1091
TauI GCSGC 2 cut(s) 644, 845
TfiI GAWTC 2 cut(s) 233, 412
Tru1I TTAA 4 cut(s) 602, 804, 900, 999
Tru9I TTAA 4 cut(s) 602, 804, 900, 999
TscAI CASTG 2 cut(s) 295, 1052
TseFI GTSAC 2 cut(s) 89, 307
TseI GCWGC 6 cut(s) 77, 179, 389, 776, 845, 910
Tsp45I GTSAC 2 cut(s) 89, 307
TspDTI ATGAA 6 cut(s) 161, 263, 462, 515, 724, 980
TspRI CASTG 2 cut(s) 295, 1052
VpaK11BI GGWCC 1 cut(s) 544
XmaJI CCTAGG 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 1027
XspI CTAG 9 cut(s) 14, 32, 86, 116, 183, 335, 386, 510, 698
Zsp2I ATGCAT 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.