Rmu_sc0002532.1_g000002

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002532.1
OG0005193
Physical Location & Seq
Reverse (-)
2822 .. 3265
444 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 444 bp
atgcatcgacatctttttcttcgaattctagttgcagtagaaactcatgactcctattttgttcaaaaaagggattcagcaggatgtcttgggctatcgtctctacaaaaagttaccgctgcaatgaggatgcttgcctatggaattggggcagatgttgtggatgactatcttagaatcagtgaaagcactgcaattgaagctatgagaaggtttgtccaagctgttattgatgtatttggcgctgaatacttaagaaggccaacttctgatgatatttccagattgctattgattggtgagagtcgtggatttcctggaatgcttggtagtatcgattgtgtgcactggaagtggaagaattgtccggttgcatggaaaggtatgttttctcgtggagatcatcgttcttatccgaaccccaccaagtggaagtctcactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

147

Amino Acids

16.72

Weight (kDa)

9.3

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_tran PF04827 83 - 137 1.7e-24 Plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 429
AciI CCGC 1 cut(s) 117
AcsI RAATTY 1 cut(s) 24
AdeI CACNNNGTG 1 cut(s) 429
AfiI CCNNNNNNNGG 1 cut(s) 429
AflII CTTAAG 1 cut(s) 253
AgsI TTSAA 2 cut(s) 65, 200
AjnI CCWGG 1 cut(s) 316
AluBI AGCT 2 cut(s) 203, 224
AluI AGCT 2 cut(s) 203, 224
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 1 cut(s) 105
Alw44I GTGCAC 1 cut(s) 344
AoxI GGCC 1 cut(s) 260
ApaLI GTGCAC 1 cut(s) 344
ApeKI GCWGC 1 cut(s) 119
ApoI RAATTY 1 cut(s) 24
ArsI GACNNNNNNTTYG 2 cut(s) 41, 73
AspLEI GCGC 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 311
AsuII TTCGAA 1 cut(s) 22
BaeGI GKGCMC 1 cut(s) 348
BauI CACGAG 1 cut(s) 393
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 2 cut(s) 29, 442
BfoI RGCGCY 1 cut(s) 246
BfrI CTTAAG 1 cut(s) 253
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 318
BmrFI CCNGG 1 cut(s) 318
BmsI GCATC 2 cut(s) 13, 120
Bpu14I TTCGAA 1 cut(s) 22
Bsa29I ATCGAT 1 cut(s) 336
BsaBI GATNNNNATC 1 cut(s) 168
BsaWI WCCGGW 1 cut(s) 367
Bsc4I CCNNNNNNNGG 1 cut(s) 429
Bse1I ACTGG 1 cut(s) 353
Bse3DI GCAATG 1 cut(s) 129
Bse8I GATNNNNATC 1 cut(s) 168
BseBI CCWGG 1 cut(s) 318
BseCI ATCGAT 1 cut(s) 336
BseGI GGATG 3 cut(s) 89, 135, 169
BseJI GATNNNNATC 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 429
BseMI GCAATG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 353
BseSI GKGCMC 1 cut(s) 348
BseXI GCAGC 1 cut(s) 106
BshFI GGCC 1 cut(s) 262
BshVI ATCGAT 1 cut(s) 336
BsiHKAI GWGCWC 1 cut(s) 348
BsiSI CCGG 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 429
BsmAI GTCTC 1 cut(s) 105
BsmBI CGTCTC 1 cut(s) 105
BsmI GAATGC 1 cut(s) 327
BsnI GGCC 1 cut(s) 262
Bsp119I TTCGAA 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 1 cut(s) 400
BspACI CCGC 1 cut(s) 117
BspANI GGCC 1 cut(s) 262
BspDI ATCGAT 1 cut(s) 336
BspHI TCATGA 1 cut(s) 46
BspT104I TTCGAA 1 cut(s) 22
BspTI CTTAAG 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 129
BsrI ACTGG 1 cut(s) 353
BssMI GATC 1 cut(s) 400
BssSI CACGAG 1 cut(s) 393
Bst2BI CACGAG 1 cut(s) 393
Bst2UI CCWGG 1 cut(s) 318
BstAFI CTTAAG 1 cut(s) 253
BstBI TTCGAA 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 1 cut(s) 173
BstF5I GGATG 3 cut(s) 89, 135, 169
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 1 cut(s) 403
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 1 cut(s) 400
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 316
BstSLI GKGCMC 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 106
Bsu15I ATCGAT 1 cut(s) 336
BsuRI GGCC 1 cut(s) 262
BsuTUI ATCGAT 1 cut(s) 336
BtsCI GGATG 3 cut(s) 89, 135, 169
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 3 cut(s) 187, 189, 346
Cac8I GCNNGC 1 cut(s) 135
CciI TCATGA 1 cut(s) 46
CfoI GCGC 1 cut(s) 245
ClaI ATCGAT 1 cut(s) 336
CviAII CATG 2 cut(s) 47, 375
CviJI RGCY 4 cut(s) 94, 203, 224, 262
CviKI_1 RGCY 4 cut(s) 94, 203, 224, 262
DdeI CTNAG 1 cut(s) 173
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
DraIII CACNNNGTG 1 cut(s) 429
EcoRI GAATTC 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 316
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 105
FaeI CATG 2 cut(s) 50, 378
FaiI YATR 5 cut(s) 48, 141, 206, 376, 386
FalI AAGNNNNNCTT 2 cut(s) 250, 282
FatI CATG 2 cut(s) 46, 374
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 3 cut(s) 96, 142, 176
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 2 cut(s) 29, 442
GlaI GCGC 1 cut(s) 244
GluI GCNGC 1 cut(s) 120
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 1 cut(s) 262
HapII CCGG 1 cut(s) 368
HhaI GCGC 1 cut(s) 245
Hin1II CATG 2 cut(s) 50, 378
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HinfI GANTC 4 cut(s) 50, 74, 177, 304
HpaII CCGG 1 cut(s) 368
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 2 cut(s) 271, 417
Hpy188III TCNNGA 2 cut(s) 47, 282
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 2 cut(s) 204, 252
HpyCH4V TGCA 6 cut(s) 4, 35, 122, 194, 346, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 1 cut(s) 173
Hsp92II CATG 2 cut(s) 50, 378
HspAI GCGC 1 cut(s) 243
Kzo9I GATC 1 cut(s) 400
LpnPI CCDG 6 cut(s) 66, 295, 303, 330, 334, 381
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 2 cut(s) 13, 120
MaeI CTAG 2 cut(s) 29, 442
MaeIII GTNAC 1 cut(s) 112
MalI GATC 1 cut(s) 402
MboI GATC 1 cut(s) 400
MboII GAAGA 2 cut(s) 11, 370
MfeI CAATTG 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 4 cut(s) 24, 144, 195, 361
MlyI GAGTC 2 cut(s) 44, 313
MnlI CCTC 1 cut(s) 120
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 254
MspA1I CMGCKG 1 cut(s) 119
MspCI CTTAAG 1 cut(s) 253
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 318
MunI CAATTG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 327
MvaI CCWGG 1 cut(s) 318
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeII GATC 1 cut(s) 400
NlaIII CATG 2 cut(s) 50, 378
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 22
PagI TCATGA 1 cut(s) 46
PctI GAATGC 1 cut(s) 327
PfeI GAWTC 2 cut(s) 74, 177
PflMI CCANNNNNTGG 1 cut(s) 429
PfoI TCCNGGA 1 cut(s) 316
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 2 cut(s) 44, 312
PpsI GAGTC 2 cut(s) 44, 312
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 400
SchI GAGTC 2 cut(s) 44, 313
ScrFI CCNGG 1 cut(s) 318
SduI GDGCHC 1 cut(s) 348
SetI ASST 4 cut(s) 205, 215, 226, 385
SfaNI GCATC 2 cut(s) 13, 120
SfuI TTCGAA 1 cut(s) 22
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
Sse9I AATT 4 cut(s) 24, 144, 195, 361
SsiI CCGC 1 cut(s) 117
SspMI CTAG 2 cut(s) 29, 442
StyD4I CCNGG 1 cut(s) 316
TaqI TCGA 3 cut(s) 7, 22, 336
TasI AATT 4 cut(s) 24, 144, 195, 361
TfiI GAWTC 2 cut(s) 74, 177
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 3 cut(s) 187, 196, 353
TseI GCWGC 1 cut(s) 119
TspRI CASTG 3 cut(s) 187, 196, 353
Van91I CCANNNNNTGG 1 cut(s) 429
Vha464I CTTAAG 1 cut(s) 253
VneI GTGCAC 1 cut(s) 344
XapI RAATTY 1 cut(s) 24
XspI CTAG 2 cut(s) 29, 442
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.