Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003069.1

Orthogroup ID

OG0001903

Physical Location & Seq

Genomic Coordinates Reverse (-)

33616 .. 34700

Gene Structure 1085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgaagaactatgacccacaaaaggacaagcgtttcagtggttccgtgaagcttccccacattcctcgtcctaagatgagggtttgcatgcttggagatgctcagcatgttgaagaggcagagaagatgggattggcctacatggatgtggaatcgctgaaaaagcttaacaagaacaagaagctggtcaagaagcttgcaaagaagtatcatgcttttttggcttctgaagctgtcatcaagcaaattcctcgtcttttgggccctggtcttaacaaggcaggtaaatttccaactctggtgagtcaccaggaatctctggaggcaaagcttaatgaaacaaaggccatggttaagttccaactaaagaaggttctttgtatgggtgttgccgtcgggaatcttgccatggatgagaaacagatattccagaatgtgcaactcagtgtcaatttcttggtttctctgttgaagaagaattggcagaatgtgagatcattgaacttgaaaagcaccatggggaaagctatccgaatttactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

180

Amino Acids

20.41

Weight (kDa)

10.06

Isoelectric Point (pI)

34.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	2 - 174	2.2e-45	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08360 AT2G27530 AT2G27530 AT5G22440 AT5G22440
fragaria_vesca	FvH4_3g24900 FvH4_3g24900 FvH4_6g18680
malus_domestica	MD03G1143900.v1.1 MD05G1199000.v1.1 MD12G1036100.v1.1 MD14G1002800.v1.1 MD14G1022900.v1.1
prunus_persica	Prupe.6G129700_v2.0.a1 Prupe.6G129700_v2.0.a1 Prupe.7G110300_v2.0.a1
pyrus_communis	pycom03g09940 pycom12g02380 pycom14g02180
rosa_chinensis	RchiOBHm_Chr3g0473651 RchiOBHm_Chr5g0044551 RchiOBHm_Chr5g0044561
rosa_laevigata	RLG00000023997 RLG00000034282 RLG00000034283
rosa_multiflora	Rmu_sc0003069.1_g000006 Rmu_sc0005978.1_g000001 Rmu_sc0006609.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036410 Rroxscaffold_6G00407980
rosa_rugosa	Rorug03G0133500 Rorug03G0133600 Rorug05G0215200 Rorug05G0215300
rosa_samantha	Rh3AG185200 Rh3BG213200 Rh3CG209900 Rh3DG209000 Rh5AG299300 Rh5BG306800 Rh5CG333500 Rh5CG333600 Rh5DG316200
rosa_wichuraiana	Rw0G008910 Rw0G009840 Rw5G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	272
AcsI	RAATTY	3 cut(s)	246, 287, 534
AcuI	CTGAAG	1 cut(s)	249
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgsI	TTSAA	4 cut(s)	113, 472, 502, 508
AjnI	CCWGG	2 cut(s)	265, 309
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	7 cut(s)	52, 166, 184, 196, 233, 331, 527
AluI	AGCT	7 cut(s)	52, 166, 184, 196, 233, 331, 527
AoxI	GGCC	3 cut(s)	135, 262, 345
ApaI	GGGCCC	1 cut(s)	266
ApoI	RAATTY	3 cut(s)	246, 287, 534
ArsI	GACNNNNNNTTYG	2 cut(s)	238, 270
AspS9I	GGNCC	2 cut(s)	262, 263
AsuHPI	GGTGA	2 cut(s)	299, 313
BaeGI	GKGCMC	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	266
BccI	CCATC	1 cut(s)	121
BceAI	ACGGC	1 cut(s)	377
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	2 cut(s)	267, 311
BfuAI	ACCTGC	1 cut(s)	272
BlpI	GCTNAGC	1 cut(s)	102
Bme1390I	CCNGG	2 cut(s)	267, 311
BmgT120I	GGNCC	2 cut(s)	262, 263
BmiI	GGNNCC	2 cut(s)	43, 264
BmrFI	CCNGG	2 cut(s)	267, 311
BmsI	GCATC	1 cut(s)	88
BpmI	CTGGAG	1 cut(s)	341
Bpu1102I	GCTNAGC	1 cut(s)	102
BsaJI	CCNNGG	4 cut(s)	265, 348, 408, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
BseBI	CCWGG	2 cut(s)	267, 311
BseDI	CCNNGG	4 cut(s)	265, 348, 408, 516
BseGI	GGATG	2 cut(s)	151, 418
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMII	CTCAG	2 cut(s)	116, 457
BseSI	GKGCMC	1 cut(s)	266
BshFI	GGCC	3 cut(s)	137, 264, 347
BslI	CCNNNNNNNGG	1 cut(s)	22
BsnI	GGCC	3 cut(s)	137, 264, 347
Bsp120I	GGGCCC	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	1 cut(s)	494
Bsp1720I	GCTNAGC	1 cut(s)	102
Bsp19I	CCATGG	3 cut(s)	348, 408, 516
BspANI	GGCC	3 cut(s)	137, 264, 347
BspCNI	CTCAG	2 cut(s)	115, 456
BspLI	GGNNCC	2 cut(s)	43, 264
BspMI	ACCTGC	1 cut(s)	272
BssECI	CCNNGG	4 cut(s)	265, 348, 408, 516
BssMI	GATC	1 cut(s)	494
BssT1I	CCWWGG	3 cut(s)	348, 408, 516
Bst2UI	CCWGG	2 cut(s)	267, 311
Bst6I	CTCTTC	1 cut(s)	108
BstC8I	GCNNGC	2 cut(s)	89, 198
BstDEI	CTNAG	3 cut(s)	72, 102, 443
BstDSI	CCRYGG	3 cut(s)	348, 408, 516
BstF5I	GGATG	2 cut(s)	151, 418
BstKTI	GATC	1 cut(s)	497
BstMBI	GATC	1 cut(s)	494
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 221, 230
BstNI	CCWGG	2 cut(s)	267, 311
BstNSI	RCATGY	2 cut(s)	91, 110
BstSCI	CCNGG	2 cut(s)	265, 309
BstSLI	GKGCMC	1 cut(s)	266
BsuRI	GGCC	3 cut(s)	137, 264, 347
BtgI	CCRYGG	3 cut(s)	348, 408, 516
BtsCI	GGATG	2 cut(s)	151, 418
BtsIMutI	CAGTG	2 cut(s)	43, 451
BveI	ACCTGC	1 cut(s)	272
Cac8I	GCNNGC	2 cut(s)	89, 198
Cfr13I	GGNCC	2 cut(s)	262, 263
CviAII	CATG	7 cut(s)	88, 107, 142, 212, 349, 409, 517
DdeI	CTNAG	3 cut(s)	72, 102, 443
DpnI	GATC	1 cut(s)	496
DpnII	GATC	1 cut(s)	494
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco130I	CCWWGG	3 cut(s)	348, 408, 516
Eco24I	GRGCYC	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	249
EcoO109I	RGGNCCY	1 cut(s)	263
EcoRII	CCWGG	2 cut(s)	265, 309
EcoT14I	CCWWGG	3 cut(s)	348, 408, 516
EcoT38I	GRGCYC	1 cut(s)	266
ErhI	CCWWGG	3 cut(s)	348, 408, 516
FaeI	CATG	7 cut(s)	91, 110, 145, 215, 352, 412, 520
FaiI	YATR	9 cut(s)	12, 89, 108, 143, 213, 350, 383, 410, 518
FatI	CATG	7 cut(s)	87, 106, 141, 211, 348, 408, 516
FokI	GGATG	2 cut(s)	158, 425
FriOI	GRGCYC	1 cut(s)	266
GsuI	CTGGAG	1 cut(s)	341
HaeIII	GGCC	3 cut(s)	137, 264, 347
Hin1II	CATG	7 cut(s)	91, 110, 145, 215, 352, 412, 520
HindIII	AAGCTT	4 cut(s)	50, 164, 194, 329
HinfI	GANTC	4 cut(s)	152, 304, 314, 400
HphI	GGTGA	2 cut(s)	299, 313
Hpy188I	TCNGA	2 cut(s)	229, 533
Hpy188III	TCNNGA	4 cut(s)	190, 320, 397, 430
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	1 cut(s)	364
HpyCH4V	TGCA	3 cut(s)	87, 200, 439
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 221, 230
HpyF3I	CTNAG	3 cut(s)	72, 102, 443
Hsp92II	CATG	7 cut(s)	91, 110, 145, 215, 352, 412, 520
Kzo9I	GATC	1 cut(s)	494
LpnPI	CCDG	9 cut(s)	170, 252, 267, 279, 284, 296, 305, 323, 443
LweI	GCATC	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	1 cut(s)	496
MboI	GATC	1 cut(s)	494
MboII	GAAGA	5 cut(s)	16, 125, 136, 484, 487
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	5 cut(s)	246, 287, 451, 478, 534
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	2 cut(s)	317, 385
MnlI	CCTC	5 cut(s)	72, 75, 109, 261, 316
MseI	TTAA	4 cut(s)	168, 273, 333, 354
MslI	CAYNNNNRTG	1 cut(s)	146
MspR9I	CCNGG	2 cut(s)	267, 311
MvaI	CCWGG	2 cut(s)	267, 311
MwoI	GCNNNNNNNGC	3 cut(s)	163, 221, 230
NcoI	CCATGG	3 cut(s)	348, 408, 516
NdeII	GATC	1 cut(s)	494
NlaIII	CATG	7 cut(s)	91, 110, 145, 215, 352, 412, 520
NlaIV	GGNNCC	2 cut(s)	43, 264
NmuCI	GTSAC	1 cut(s)	305
NspI	RCATGY	2 cut(s)	91, 110
PaeI	GCATGC	1 cut(s)	91
PfeI	GAWTC	3 cut(s)	152, 314, 400
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
Psp6I	CCWGG	2 cut(s)	265, 309
PspGI	CCWGG	2 cut(s)	265, 309
PspN4I	GGNNCC	2 cut(s)	43, 264
PspOMI	GGGCCC	1 cut(s)	262
PspPI	GGNCC	2 cut(s)	262, 263
RseI	CAYNNNNRTG	1 cut(s)	146
SaqAI	TTAA	4 cut(s)	168, 273, 333, 354
Sau3AI	GATC	1 cut(s)	494
Sau96I	GGNCC	2 cut(s)	262, 263
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	2 cut(s)	267, 311
SduI	GDGCHC	1 cut(s)	266
SetI	ASST	9 cut(s)	54, 168, 186, 198, 235, 286, 333, 375, 529
SfaNI	GCATC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	146
SphI	GCATGC	1 cut(s)	91
Sse9I	AATT	5 cut(s)	246, 287, 451, 478, 534
StyD4I	CCNGG	2 cut(s)	265, 309
StyI	CCWWGG	3 cut(s)	348, 408, 516
TasI	AATT	5 cut(s)	246, 287, 451, 478, 534
TfiI	GAWTC	3 cut(s)	152, 314, 400
Tru1I	TTAA	4 cut(s)	168, 273, 333, 354
Tru9I	TTAA	4 cut(s)	168, 273, 333, 354
TscAI	CASTG	2 cut(s)	43, 451
TseFI	GTSAC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	2 cut(s)	17, 351
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	2 cut(s)	43, 451
XapI	RAATTY	3 cut(s)	246, 287, 534
XceI	RCATGY	2 cut(s)	91, 110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.