Rmu_sc0003108.1_g000025

50S ribosomal protein L19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003108.1
OG0003350
Physical Location & Seq
Forward (+)
93766 .. 98281
4516 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1230 bp
atggctcatttcagtccaatcggagcaaacccatttcgcggcggtgctgggtttagcggctccatagcttccaatggagttgggtctctctccaagtgttcttatcattcatgggctgcattcgctaaaacaggctctcaaactgagacattgacatgctcgagtagtgccatgctacttaggagtcctcaactaggcttgtttcgatggacagcagtttcaccacctttccccagcaggtgcatgacaacagtgggtaatacggttgaatcatcaacccaaaattcaatgactgagcttgatgcacctccccgcatcaaatttaagaggcttgataaaactgccaagcacataatgcagattctagataaggaagctgtacaggaagtgagggggcatagagaaatacctgatataaagcctggttatatcgtgcaactcagagtggaagtacccgacaacaagcggcgtgtttcagtcttgaaaggcattgtgatagcaagacgtaatgctggtctaaactctacattcagaatcaggaggctagttgctggagtcggggttgaatctctctttccactgtattcgcctaacataaaagagataaagatattggacaagaagaaagtgcggagggccaagctttactatctgagggacaaaatgaatgccctcaagaagcaatacaatgaagttcatcagcctttggaccttgctcttgtcttcgttggtacagagttgcaatcttcagatatttctgcaagcaaactctccaaacatgcttatccagctcttgtggacttgcttaaagtctctttcacacaatcaaatttctccatggcattcccctgtatttctgcatcagagaaggatgctatggaaagttctttagtgtcagggatgtcagagatttgtgggcagaattttggattcagtaatgtttgtttcttggagtcatgctcaatgtggggtgatgatgttcaaaagctttcagacctgcattcggtccatgattatattctttcgaggatggagaagagaccaaatggggaagcagatttggtggtgttctgccacaaaggatctgattctaaaaaggaactagaacccccacattcagagagtaaaaaattctctgagatggttagttttgtggatcagtctggggaaaaatatgcagttctatatgtttcagaccccattaaatcaatccaatatccttctcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L19

Protein Analysis

409

Amino Acids

45.37

Weight (kDa)

9.21

Isoelectric Point (pI)

48.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L19 PF01245 127 - 223 2e-29 Ribosomal protein L19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 228
Acc36I ACCTGC 2 cut(s) 228, 1005
AccII CGCG 1 cut(s) 39
AciI CCGC 6 cut(s) 39, 42, 57, 313, 466, 631
AclWI GGATC 2 cut(s) 1090, 1164
AcsI RAATTY 5 cut(s) 283, 320, 829, 922, 1130
AcuI CTGAAG 1 cut(s) 732
AfaI GTAC 3 cut(s) 381, 453, 733
AfiI CCNNNNNNNGG 3 cut(s) 38, 194, 1003
AgsI TTSAA 5 cut(s) 269, 288, 484, 566, 983
AjnI CCWGG 1 cut(s) 421
AluBI AGCT 6 cut(s) 68, 298, 377, 643, 791, 988
AluI AGCT 6 cut(s) 68, 298, 377, 643, 791, 988
Alw26I GTCTC 4 cut(s) 90, 140, 817, 1033
AlwI GGATC 2 cut(s) 1090, 1164
Ama87I CYCGRG 1 cut(s) 160
AoxI GGCC 1 cut(s) 636
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 5 cut(s) 283, 320, 829, 922, 1130
AspS9I GGNCC 3 cut(s) 636, 709, 1006
AsuHPI GGTGA 2 cut(s) 213, 983
AvaI CYCGRG 1 cut(s) 160
AvaII GGWCC 2 cut(s) 709, 1006
BbsI GAAGAC 1 cut(s) 715
BbvI GCAGC 1 cut(s) 103
BccI CCATC 3 cut(s) 201, 1024, 1135
BciT130I CCWGG 1 cut(s) 423
BcoDI GTCTC 4 cut(s) 90, 140, 817, 1033
BfaI CTAG 4 cut(s) 194, 365, 545, 1103
BfuAI ACCTGC 2 cut(s) 228, 1005
BisI GCNGC 4 cut(s) 40, 58, 117, 467
BlsI GCNGC 4 cut(s) 41, 59, 118, 468
Bme1390I CCNGG 1 cut(s) 423
Bme18I GGWCC 2 cut(s) 709, 1006
BmeT110I CYCGRG 1 cut(s) 160
BmgT120I GGNCC 3 cut(s) 636, 709, 1006
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 423
BmsI GCATC 4 cut(s) 292, 324, 862, 869
BpiI GAAGAC 1 cut(s) 715
BplI GAGNNNNNCTC 2 cut(s) 944, 976
BpmI CTGGAG 1 cut(s) 573
BpuEI CTTGAG 1 cut(s) 659
BsaI GGTCTC 2 cut(s) 90, 1033
BsaJI CCNNGG 1 cut(s) 837
BsaXI ACNNNNNCTCC 2 cut(s) 546, 576
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 194, 1003
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 837
BseGI GGATG 3 cut(s) 877, 906, 1035
BseLI CCNNNNNNNGG 3 cut(s) 38, 194, 1003
BseMII CTCAG 5 cut(s) 135, 285, 454, 644, 1128
BseXI GCAGC 1 cut(s) 103
BseYI CCCAGC 2 cut(s) 47, 233
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 1 cut(s) 638
BsiHKCI CYCGRG 1 cut(s) 160
BslFI GGGAC 1 cut(s) 671
BslI CCNNNNNNNGG 3 cut(s) 38, 194, 1003
BsmAI GTCTC 4 cut(s) 90, 140, 817, 1033
BsmFI GGGAC 1 cut(s) 671
BsmI GAATGC 4 cut(s) 119, 673, 842, 1000
BsnI GGCC 1 cut(s) 638
Bso31I GGTCTC 2 cut(s) 90, 1033
BsoBI CYCGRG 1 cut(s) 160
Bsp1407I TGTACA 1 cut(s) 379
Bsp143I GATC 2 cut(s) 1082, 1156
Bsp19I CCATGG 1 cut(s) 837
BspACI CCGC 6 cut(s) 39, 42, 57, 313, 466, 631
BspANI GGCC 1 cut(s) 638
BspCNI CTCAG 5 cut(s) 136, 286, 453, 645, 1129
BspFNI CGCG 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 61
BspMI ACCTGC 2 cut(s) 228, 1005
BspPI GGATC 2 cut(s) 1090, 1164
BspTNI GGTCTC 2 cut(s) 90, 1033
BsrGI TGTACA 1 cut(s) 379
BssECI CCNNGG 1 cut(s) 837
BssMI GATC 2 cut(s) 1082, 1156
BssT1I CCWWGG 1 cut(s) 837
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 3 cut(s) 253, 265, 582
Bst6I CTCTTC 1 cut(s) 1031
BstAPI GCANNNNNTGC 1 cut(s) 355
BstAUI TGTACA 1 cut(s) 379
BstC8I GCNNGC 1 cut(s) 763
BstDEI CTNAG 6 cut(s) 144, 179, 294, 440, 653, 1137
BstDSI CCRYGG 1 cut(s) 837
BstENI CCTNNNNNAGG 1 cut(s) 192
BstF5I GGATG 3 cut(s) 877, 906, 1035
BstFNI CGCG 1 cut(s) 39
BstKTI GATC 2 cut(s) 1085, 1159
BstMAI GTCTC 4 cut(s) 90, 140, 817, 1033
BstMBI GATC 2 cut(s) 1082, 1156
BstMWI GCNNNNNNNGC 3 cut(s) 122, 355, 788
BstNI CCWGG 1 cut(s) 423
BstNSI RCATGY 2 cut(s) 159, 782
BstSCI CCNGG 1 cut(s) 421
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 715
BstX2I RGATCY 1 cut(s) 1082
BstYI RGATCY 1 cut(s) 1082
BsuRI GGCC 1 cut(s) 638
BtgI CCRYGG 1 cut(s) 837
BtsCI GGATG 3 cut(s) 877, 906, 1035
BtsIMutI CAGTG 2 cut(s) 258, 578
BveI ACCTGC 2 cut(s) 228, 1005
Cac8I GCNNGC 1 cut(s) 763
Cfr13I GGNCC 3 cut(s) 636, 709, 1006
Csp6I GTAC 3 cut(s) 380, 452, 732
CviAII CATG 8 cut(s) 111, 156, 172, 244, 779, 838, 957, 1010
CviQI GTAC 3 cut(s) 380, 452, 732
DdeI CTNAG 6 cut(s) 144, 179, 294, 440, 653, 1137
DpnI GATC 2 cut(s) 1084, 1158
DpnII GATC 2 cut(s) 1082, 1156
Eam1104I CTCTTC 1 cut(s) 1031
EarI CTCTTC 1 cut(s) 1031
Eco130I CCWWGG 1 cut(s) 837
Eco31I GGTCTC 2 cut(s) 90, 1033
Eco47I GGWCC 2 cut(s) 709, 1006
Eco57I CTGAAG 1 cut(s) 732
Eco88I CYCGRG 1 cut(s) 160
EcoNI CCTNNNNNAGG 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 837
ErhI CCWWGG 1 cut(s) 837
FaeI CATG 8 cut(s) 114, 159, 175, 247, 782, 841, 960, 1013
FaqI GGGAC 1 cut(s) 671
FatI CATG 8 cut(s) 110, 155, 171, 243, 778, 837, 956, 1009
FauI CCCGC 1 cut(s) 320
Fnu4HI GCNGC 4 cut(s) 40, 58, 117, 467
FokI GGATG 3 cut(s) 884, 913, 1042
Fsp4HI GCNGC 4 cut(s) 40, 58, 117, 467
FspBI CTAG 4 cut(s) 194, 365, 545, 1103
GluI GCNGC 4 cut(s) 40, 58, 117, 467
GsaI CCCAGC 2 cut(s) 51, 237
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 1 cut(s) 638
Hin1II CATG 8 cut(s) 114, 159, 175, 247, 782, 841, 960, 1013
HindIII AAGCTT 2 cut(s) 641, 986
HinfI GANTC 9 cut(s) 184, 269, 361, 534, 555, 566, 930, 953, 1088
HphI GGTGA 2 cut(s) 213, 983
Hpy166II GTNNAC 1 cut(s) 799
Hpy188III TCNNGA 4 cut(s) 365, 481, 538, 676
Hpy8I GTNNAC 1 cut(s) 799
HpyAV CCTTC 2 cut(s) 862, 1230
HpyCH4III ACNGT 3 cut(s) 253, 265, 582
HpyCH4IV ACGT 1 cut(s) 505
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 355, 788
HpyF3I CTNAG 6 cut(s) 144, 179, 294, 440, 653, 1137
HpySE526I ACGT 1 cut(s) 505
Hsp92II CATG 8 cut(s) 114, 159, 175, 247, 782, 841, 960, 1013
Kzo9I GATC 2 cut(s) 1082, 1156
LmnI GCTCC 2 cut(s) 23, 65
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 4 cut(s) 292, 324, 862, 869
MaeI CTAG 4 cut(s) 194, 365, 545, 1103
MaeII ACGT 1 cut(s) 505
MalI GATC 2 cut(s) 1084, 1158
MboI GATC 2 cut(s) 1082, 1156
MboII GAAGA 4 cut(s) 634, 715, 738, 1048
MflI RGATCY 1 cut(s) 1082
MluCI AATT 5 cut(s) 283, 320, 829, 922, 1130
MlyI GAGTC 3 cut(s) 193, 564, 962
MnlI CCTC 9 cut(s) 198, 318, 321, 384, 534, 627, 648, 683, 1020
MseI TTAA 3 cut(s) 324, 807, 1203
MslI CAYNNNNRTG 1 cut(s) 154
MspR9I CCNGG 1 cut(s) 423
Mva1269I GAATGC 4 cut(s) 119, 673, 842, 1000
MvaI CCWGG 1 cut(s) 423
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 3 cut(s) 122, 355, 788
NcoI CCATGG 1 cut(s) 837
NdeII GATC 2 cut(s) 1082, 1156
NlaIII CATG 8 cut(s) 114, 159, 175, 247, 782, 841, 960, 1013
NlaIV GGNNCC 1 cut(s) 61
NspI RCATGY 2 cut(s) 159, 782
PaeR7I CTCGAG 1 cut(s) 160
PaqCI CACCTGC 1 cut(s) 228
PctI GAATGC 4 cut(s) 119, 673, 842, 1000
PfeI GAWTC 6 cut(s) 269, 361, 534, 566, 930, 1088
PkrI GCNGC 4 cut(s) 41, 59, 118, 468
PleI GAGTC 3 cut(s) 192, 563, 961
PpsI GAGTC 3 cut(s) 192, 563, 961
Psp6I CCWGG 1 cut(s) 421
PspFI CCCAGC 2 cut(s) 47, 233
PspGI CCWGG 1 cut(s) 421
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 3 cut(s) 636, 709, 1006
PspXI VCTCGAGB 1 cut(s) 160
PsuI RGATCY 1 cut(s) 1082
RsaI GTAC 3 cut(s) 381, 453, 733
RsaNI GTAC 3 cut(s) 380, 452, 732
RseI CAYNNNNRTG 1 cut(s) 154
SaqAI TTAA 3 cut(s) 324, 807, 1203
SatI GCNGC 4 cut(s) 40, 58, 117, 467
Sau3AI GATC 2 cut(s) 1082, 1156
Sau96I GGNCC 3 cut(s) 636, 709, 1006
SchI GAGTC 3 cut(s) 193, 564, 962
ScrFI CCNGG 1 cut(s) 423
SfaNI GCATC 4 cut(s) 292, 324, 862, 869
Sfr274I CTCGAG 1 cut(s) 160
SinI GGWCC 2 cut(s) 709, 1006
SlaI CTCGAG 1 cut(s) 160
SmiMI CAYNNNNRTG 1 cut(s) 154
SmlI CTYRAG 2 cut(s) 160, 674
SmoI CTYRAG 2 cut(s) 160, 674
Sse9I AATT 5 cut(s) 283, 320, 829, 922, 1130
SsiI CCGC 6 cut(s) 39, 42, 57, 313, 466, 631
SspMI CTAG 4 cut(s) 194, 365, 545, 1103
StyD4I CCNGG 1 cut(s) 421
StyI CCWWGG 1 cut(s) 837
TaaI ACNGT 3 cut(s) 253, 265, 582
TaiI ACGT 1 cut(s) 508
TaqI TCGA 3 cut(s) 161, 205, 1025
TaqII GACCGA 1 cut(s) 994
TasI AATT 5 cut(s) 283, 320, 829, 922, 1130
TatI WGTACW 1 cut(s) 379
TauI GCSGC 3 cut(s) 42, 60, 469
TfiI GAWTC 6 cut(s) 269, 361, 534, 566, 930, 1088
Tru1I TTAA 3 cut(s) 324, 807, 1203
Tru9I TTAA 3 cut(s) 324, 807, 1203
TscAI CASTG 2 cut(s) 258, 585
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 4 cut(s) 99, 680, 686, 705
TspRI CASTG 2 cut(s) 258, 585
VpaK11BI GGWCC 2 cut(s) 709, 1006
XagI CCTNNNNNAGG 1 cut(s) 192
XapI RAATTY 5 cut(s) 283, 320, 829, 922, 1130
XbaI TCTAGA 1 cut(s) 364
XceI RCATGY 2 cut(s) 159, 782
XhoI CTCGAG 1 cut(s) 160
XspI CTAG 4 cut(s) 194, 365, 545, 1103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.