Rmu_sc0003116.1_g000010

Dehydration-responsive element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003116.1
OG0003740
Physical Location & Seq
Forward (+)
52775 .. 53353
579 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 579 bp
atggacaatgaccaagagagaaaggtgacgaggaaagccaacatgggaaggtcgagaaagggctccatgaaagggaagggaggccccgagaacgctacgtgcactttcagaggagtcaggcaaagaacttggggcaaatgggtggcggaaatacgtgagcccaaacgcggtgctaggctttggctaggcactttcaacacttccacggaggcagcgctggcttatgacgatgcggctcgaaagctgtacggctcctccgccaagctcaacttgccggaccactcctcctcctcctcatcctcctcctccacatcaccgtcttcgaaaacgagttctgctgataaaggttgtggtgaacacaagcatgaagcttattcaggtgatatgcatggaggttggagtagtaataatagagagaatgattgcttgtgggagagtaatcctgtgttgagtgctgattggtctggagtttgtggggagagggaattcttagagttgaatgatataggaattatgatgggtggaaatggctttgtaagttgcgaggcttctttggaagaagctccatggagcttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

192

Amino Acids

20.91

Weight (kDa)

6.9

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 36 - 84 5.8e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 168
AciI CCGC 4 cut(s) 146, 168, 233, 258
AcsI RAATTY 1 cut(s) 485
AfaI GTAC 1 cut(s) 248
AfeI AGCGCT 1 cut(s) 216
AfiI CCNNNNNNNGG 2 cut(s) 72, 167
AgsI TTSAA 2 cut(s) 196, 499
AluBI AGCT 5 cut(s) 244, 265, 371, 563, 573
AluI AGCT 5 cut(s) 244, 265, 371, 563, 573
Alw21I GWGCWC 1 cut(s) 104
Alw44I GTGCAC 1 cut(s) 100
Ama87I CYCGRG 1 cut(s) 86
Aor51HI AGCGCT 1 cut(s) 216
AoxI GGCC 1 cut(s) 82
ApaLI GTGCAC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 485
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 2 cut(s) 83, 277
AsuHPI GGTGA 4 cut(s) 37, 306, 365, 392
AsuII TTCGAA 1 cut(s) 323
AvaI CYCGRG 1 cut(s) 86
AvaII GGWCC 1 cut(s) 277
BaeGI GKGCMC 1 cut(s) 104
BanII GRGCYC 2 cut(s) 65, 162
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 224
BccI CCATC 1 cut(s) 511
BceAI ACGGC 1 cut(s) 265
BfaI CTAG 2 cut(s) 174, 185
BfoI RGCGCY 1 cut(s) 218
BisI GCNGC 2 cut(s) 213, 234
BlsI GCNGC 2 cut(s) 214, 235
Bme18I GGWCC 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 86
BmgT120I GGNCC 2 cut(s) 83, 277
BmiI GGNNCC 3 cut(s) 64, 85, 253
BmsI GCATC 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 486
Bpu14I TTCGAA 1 cut(s) 323
BsaAI YACGTR 2 cut(s) 99, 155
BsaJI CCNNGG 2 cut(s) 204, 566
BsaXI ACNNNNNCTCC 6 cut(s) 239, 269, 269, 272, 299, 302
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 167
BseDI CCNNGG 2 cut(s) 204, 566
BseGI GGATG 1 cut(s) 296
BseLI CCNNNNNNNGG 2 cut(s) 72, 167
BseRI GAGGAG 8 cut(s) 126, 244, 274, 277, 280, 283, 292, 295
BseSI GKGCMC 1 cut(s) 104
BseXI GCAGC 1 cut(s) 224
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 104
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 1 cut(s) 275
BslI CCNNNNNNNGG 2 cut(s) 72, 167
BsnI GGCC 1 cut(s) 84
BsoBI CYCGRG 1 cut(s) 86
Bsp119I TTCGAA 1 cut(s) 323
Bsp1286I GDGCHC 3 cut(s) 65, 104, 162
Bsp19I CCATGG 1 cut(s) 566
BspACI CCGC 4 cut(s) 146, 168, 233, 258
BspANI GGCC 1 cut(s) 84
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 3 cut(s) 64, 85, 253
BspT104I TTCGAA 1 cut(s) 323
BssECI CCNNGG 2 cut(s) 204, 566
BssT1I CCWWGG 1 cut(s) 566
Bst4CI ACNGT 1 cut(s) 318
BstBAI YACGTR 2 cut(s) 99, 155
BstBI TTCGAA 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 490
BstDSI CCRYGG 2 cut(s) 204, 566
BstF5I GGATG 1 cut(s) 296
BstFNI CGCG 1 cut(s) 168
BstH2I RGCGCY 1 cut(s) 218
BstHHI GCGC 1 cut(s) 217
BstMWI GCNNNNNNNGC 2 cut(s) 218, 271
BstSLI GKGCMC 1 cut(s) 104
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 1 cut(s) 224
BstV2I GAAGAC 1 cut(s) 312
BsuRI GGCC 1 cut(s) 84
BtgI CCRYGG 2 cut(s) 204, 566
BtsCI GGATG 1 cut(s) 296
Cac8I GCNNGC 1 cut(s) 219
CfoI GCGC 1 cut(s) 217
Cfr13I GGNCC 2 cut(s) 83, 277
Csp6I GTAC 1 cut(s) 247
CviAII CATG 5 cut(s) 43, 67, 365, 389, 567
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 490
EciI GGCGGA 2 cut(s) 161, 247
Eco130I CCWWGG 1 cut(s) 566
Eco24I GRGCYC 2 cut(s) 65, 162
Eco47I GGWCC 1 cut(s) 277
Eco47III AGCGCT 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 83
EcoRI GAATTC 1 cut(s) 485
EcoT14I CCWWGG 1 cut(s) 566
EcoT22I ATGCAT 1 cut(s) 390
EcoT38I GRGCYC 2 cut(s) 65, 162
ErhI CCWWGG 1 cut(s) 566
FaeI CATG 5 cut(s) 46, 70, 368, 392, 570
FaiI YATR 9 cut(s) 44, 68, 225, 366, 386, 390, 506, 515, 568
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FatI CATG 5 cut(s) 42, 66, 364, 388, 566
Fnu4HI GCNGC 2 cut(s) 213, 234
FokI GGATG 1 cut(s) 283
FriOI GRGCYC 2 cut(s) 65, 162
Fsp4HI GCNGC 2 cut(s) 213, 234
FspBI CTAG 2 cut(s) 174, 185
GlaI GCGC 1 cut(s) 216
GluI GCNGC 2 cut(s) 213, 234
GsuI CTGGAG 1 cut(s) 486
HaeII RGCGCY 1 cut(s) 218
HaeIII GGCC 1 cut(s) 84
HapII CCGG 1 cut(s) 275
HhaI GCGC 1 cut(s) 217
Hin1II CATG 5 cut(s) 46, 70, 368, 392, 570
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HindIII AAGCTT 1 cut(s) 369
HinfI GANTC 1 cut(s) 114
HpaII CCGG 1 cut(s) 275
HphI GGTGA 4 cut(s) 37, 306, 365, 392
Hpy166II GTNNAC 2 cut(s) 102, 356
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 2 cut(s) 54, 465
Hpy8I GTNNAC 2 cut(s) 102, 356
HpyAV CCTTC 2 cut(s) 42, 70
HpyCH4III ACNGT 1 cut(s) 318
HpyCH4IV ACGT 2 cut(s) 98, 154
HpyCH4V TGCA 2 cut(s) 102, 388
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 271
HpyF3I CTNAG 1 cut(s) 490
HpySE526I ACGT 2 cut(s) 98, 154
Hsp92II CATG 5 cut(s) 46, 70, 368, 392, 570
HspAI GCGC 1 cut(s) 215
LmnI GCTCC 4 cut(s) 68, 257, 568, 570
LpnPI CCDG 6 cut(s) 103, 203, 288, 363, 450, 456
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 1 cut(s) 220
MaeI CTAG 2 cut(s) 174, 185
MaeII ACGT 2 cut(s) 98, 154
MaeIII GTNAC 1 cut(s) 25
MboII GAAGA 2 cut(s) 312, 569
MhlI GDGCHC 3 cut(s) 65, 104, 162
MluCI AATT 2 cut(s) 485, 510
MlyI GAGTC 1 cut(s) 123
MmeI TCCRAC 1 cut(s) 377
Mph1103I ATGCAT 1 cut(s) 390
MslI CAYNNNNRTG 1 cut(s) 363
MspI CCGG 1 cut(s) 275
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 218, 271
NcoI CCATGG 1 cut(s) 566
NlaIII CATG 5 cut(s) 46, 70, 368, 392, 570
NlaIV GGNNCC 3 cut(s) 64, 85, 253
NmuCI GTSAC 1 cut(s) 25
NsiI ATGCAT 1 cut(s) 390
NspV TTCGAA 1 cut(s) 323
PkrI GCNGC 2 cut(s) 214, 235
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
Ppu21I YACGTR 2 cut(s) 99, 155
PspN4I GGNNCC 3 cut(s) 64, 85, 253
PspPI GGNCC 2 cut(s) 83, 277
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 363
SatI GCNGC 2 cut(s) 213, 234
Sau96I GGNCC 2 cut(s) 83, 277
SchI GAGTC 1 cut(s) 123
SduI GDGCHC 3 cut(s) 65, 104, 162
SfaNI GCATC 1 cut(s) 220
SfuI TTCGAA 1 cut(s) 323
SinI GGWCC 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 363
Sse9I AATT 2 cut(s) 485, 510
SsiI CCGC 4 cut(s) 146, 168, 233, 258
SspMI CTAG 2 cut(s) 174, 185
StyI CCWWGG 1 cut(s) 566
TaaI ACNGT 1 cut(s) 318
TaiI ACGT 2 cut(s) 101, 157
TaqI TCGA 3 cut(s) 53, 238, 323
TasI AATT 2 cut(s) 485, 510
TauI GCSGC 1 cut(s) 236
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 2 cut(s) 83, 381
TspGWI ACGGA 1 cut(s) 221
VneI GTGCAC 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 277
XapI RAATTY 1 cut(s) 485
XspI CTAG 2 cut(s) 174, 185
Zsp2I ATGCAT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.