Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003576.1

Orthogroup ID

OG0002707

Physical Location & Seq

Genomic Coordinates Forward (+)

25804 .. 28706

Gene Structure 2903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atgcatgcacaatcctctcttttggtcagatctgaaaacttccaatcagagttggctcatgggttggagttgagtggaaaacgattcctctgggtggcgagacctcccagagccgatggtgcttcgggaagcttcttcgaagctggtgttgatggtgcccttacggcgtcatatctgccggatgggttttcggagaggacacgaggggcagggctgggcaacatcttgccgccatcctccaccggaatcttcaaagaatcaaggtcaaatccggtagccatgtctagggctcgagtctacgccgacgtcaacgttcagcgccacagagattactgggattacgaatctttcgtccttcaatggggtgttcaagatgaatatgaggttgttcggaaggttggaagaggaaagtacagtgaggtcttcgagggtataaatgtcaccaacaatgaaaaatgcgtgatcaagatcctcagaccagtcaagaaaaagtgcaaaaatgatgaggaaattgtagctgttctagctcatgagctaggccattggaagcttaatcacaatgtatacttcttcatttctatacagatccgtatgctgttacactttgggggatatgctctcctgagaaactccagcagtctgtttcatactttgggggatatgcagtcctactttgttgaatggtcattcgatgggttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

233

Amino Acids

26.38

Weight (kDa)

7.82

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48	PF01435	157 - 219	1.1e-09	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300
malus_domestica	MD08G1087400.v1.1 MD15G1072400.v1.1 MD15G1314700.v1.1
prunus_persica	Prupe.1G425000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0357221 RchiOBHm_Chr1g0362391 RchiOBHm_Chr2g0131551 RchiOBHm_Chr6g0309321
rosa_laevigata	RLG00000009840 RLG00000010574 RLG00000021364 RLG00000031506
rosa_multiflora	Rmu_sc0003576.1_g000007 Rmu_sc0015692.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228160 Rroxscaffold_6G00412270 Rroxscaffold_7G00159490
rosa_rugosa	Rorug01G0255000 Rorug05G0444500 Rorug05G0444500 Rorug06G0371000
rosa_samantha	Rh2BG357900 Rh5AG062100 Rh5AG134700 Rh5BG310400 Rh5DG320900 Rh6AG235600 Rh6AG484400 Rh6BG493500 Rh6CG498300 Rh6DG484800
rosa_wichuraiana	Rw6G028820 Rw6G042170 Rw7G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	700
AatII	GACGTC	1 cut(s)	309
AccB1I	GGYRCC	1 cut(s)	155
AccI	GTMKAC	2 cut(s)	297, 564
AciI	CCGC	1 cut(s)	230
AclI	AACGTT	1 cut(s)	312
AclWI	GGATC	2 cut(s)	463, 580
AcyI	GRCGYC	2 cut(s)	167, 306
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	3 cut(s)	94, 285, 361
AgsI	TTSAA	4 cut(s)	253, 359, 371, 680
AluBI	AGCT	6 cut(s)	132, 143, 518, 527, 535, 550
AluI	AGCT	6 cut(s)	132, 143, 518, 527, 535, 550
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	2 cut(s)	463, 580
Ama87I	CYCGRG	1 cut(s)	291
AoxI	GGCC	1 cut(s)	538
ArsI	GACNNNNNNTTYG	2 cut(s)	336, 368
AspLEI	GCGC	1 cut(s)	321
AsuHPI	GGTGA	1 cut(s)	433
AsuII	TTCGAA	1 cut(s)	138
AvaI	CYCGRG	1 cut(s)	291
BaeGI	GKGCMC	1 cut(s)	160
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	292
BauI	CACGAG	1 cut(s)	201
BbsI	GAAGAC	1 cut(s)	415
BccI	CCATC	5 cut(s)	110, 146, 176, 241, 686
BceAI	ACGGC	1 cut(s)	180
BclI	TGATCA	1 cut(s)	462
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	3 cut(s)	285, 524, 536
BfoI	RGCGCY	1 cut(s)	322
BglI	GCCNNNNNGGC	1 cut(s)	164
BglII	AGATCT	1 cut(s)	29
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
BmeT110I	CYCGRG	1 cut(s)	291
BmiI	GGNNCC	1 cut(s)	157
BmrI	ACTGGG	1 cut(s)	343
BmuI	ACTGGG	1 cut(s)	343
BpiI	GAAGAC	1 cut(s)	415
BpmI	CTGGAG	1 cut(s)	616
Bpu14I	TTCGAA	1 cut(s)	138
BsaBI	GATNNNNATC	1 cut(s)	467
BsaHI	GRCGYC	2 cut(s)	167, 306
BsaI	GGTCTC	1 cut(s)	94
BsaWI	WCCGGW	2 cut(s)	242, 271
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 285, 361
Bse1I	ACTGG	2 cut(s)	338, 479
Bse8I	GATNNNNATC	1 cut(s)	467
BseGI	GGATG	2 cut(s)	187, 233
BseJI	GATNNNNATC	1 cut(s)	467
BseLI	CCNNNNNNNGG	3 cut(s)	94, 285, 361
BseMII	CTCAG	2 cut(s)	487, 614
BseNI	ACTGG	2 cut(s)	338, 479
BseSI	GKGCMC	1 cut(s)	160
BseYI	CCCAGC	1 cut(s)	214
BshFI	GGCC	1 cut(s)	540
BshNI	GGYRCC	1 cut(s)	155
BsiHKCI	CYCGRG	1 cut(s)	291
BsiSI	CCGG	3 cut(s)	179, 243, 272
BslI	CCNNNNNNNGG	3 cut(s)	94, 285, 361
BsmAI	GTCTC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	540
Bso31I	GGTCTC	1 cut(s)	94
BsoBI	CYCGRG	1 cut(s)	291
Bsp119I	TTCGAA	1 cut(s)	138
Bsp1286I	GDGCHC	2 cut(s)	160, 292
Bsp143I	GATC	4 cut(s)	29, 462, 468, 585
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	1 cut(s)	540
BspCNI	CTCAG	2 cut(s)	486, 615
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	1 cut(s)	157
BspPI	GGATC	2 cut(s)	463, 580
BspT104I	TTCGAA	1 cut(s)	138
BspT107I	GGYRCC	1 cut(s)	155
BspTNI	GGTCTC	1 cut(s)	94
BsrI	ACTGG	2 cut(s)	338, 479
BssMI	GATC	4 cut(s)	29, 462, 468, 585
BssNAI	GTATAC	1 cut(s)	565
BssNI	GRCGYC	2 cut(s)	167, 306
BssSI	CACGAG	1 cut(s)	201
Bst1107I	GTATAC	1 cut(s)	565
Bst2BI	CACGAG	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	416
Bst6I	CTCTTC	1 cut(s)	397
BstACI	GRCGYC	2 cut(s)	167, 306
BstBI	TTCGAA	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	473, 623
BstF5I	GGATG	2 cut(s)	187, 233
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	4 cut(s)	32, 465, 471, 588
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	4 cut(s)	29, 462, 468, 585
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 164, 524
BstNSI	RCATGY	1 cut(s)	8
BstSLI	GKGCMC	1 cut(s)	160
BstV2I	GAAGAC	1 cut(s)	415
BstX2I	RGATCY	3 cut(s)	29, 468, 585
BstYI	RGATCY	3 cut(s)	29, 468, 585
BstZ17I	GTATAC	1 cut(s)	565
BsuRI	GGCC	1 cut(s)	540
BtsCI	GGATG	2 cut(s)	187, 233
BtsIMutI	CAGTG	1 cut(s)	421
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	1 cut(s)	529
CfoI	GCGC	1 cut(s)	321
CseI	GACGC	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	4 cut(s)	5, 59, 280, 530
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	2 cut(s)	473, 623
DpnI	GATC	4 cut(s)	31, 464, 470, 587
DpnII	GATC	4 cut(s)	29, 462, 468, 585
Eam1104I	CTCTTC	1 cut(s)	397
EarI	CTCTTC	1 cut(s)	397
Eco24I	GRGCYC	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	291
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	292
FaeI	CATG	4 cut(s)	8, 62, 283, 533
FatI	CATG	4 cut(s)	4, 58, 279, 529
FbaI	TGATCA	1 cut(s)	462
FblI	GTMKAC	2 cut(s)	297, 564
Fnu4HI	GCNGC	1 cut(s)	230
FokI	GGATG	2 cut(s)	194, 220
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	1 cut(s)	230
FspBI	CTAG	3 cut(s)	285, 524, 536
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	1 cut(s)	230
GsaI	CCCAGC	1 cut(s)	218
GsuI	CTGGAG	1 cut(s)	616
HaeII	RGCGCY	1 cut(s)	322
HaeIII	GGCC	1 cut(s)	540
HapII	CCGG	3 cut(s)	179, 243, 272
HgaI	GACGC	1 cut(s)	156
HhaI	GCGC	1 cut(s)	321
Hin1I	GRCGYC	2 cut(s)	167, 306
Hin1II	CATG	4 cut(s)	8, 62, 283, 533
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	2 cut(s)	130, 548
HinfI	GANTC	5 cut(s)	84, 246, 257, 294, 344
HpaII	CCGG	3 cut(s)	179, 243, 272
HphI	GGTGA	1 cut(s)	433
Hpy166II	GTNNAC	3 cut(s)	298, 310, 565
Hpy188I	TCNGA	6 cut(s)	29, 34, 49, 193, 393, 476
Hpy188III	TCNNGA	6 cut(s)	126, 371, 466, 484, 530, 622
Hpy8I	GTNNAC	3 cut(s)	298, 310, 565
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	2 cut(s)	365, 388
HpyCH4III	ACNGT	1 cut(s)	416
HpyCH4IV	ACGT	2 cut(s)	306, 312
HpyCH4V	TGCA	4 cut(s)	4, 8, 495, 664
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 164, 524
HpyF3I	CTNAG	2 cut(s)	473, 623
HpySE526I	ACGT	2 cut(s)	306, 312
Hsp92I	GRCGYC	2 cut(s)	167, 306
Hsp92II	CATG	4 cut(s)	8, 62, 283, 533
HspAI	GCGC	1 cut(s)	319
Ksp22I	TGATCA	1 cut(s)	462
Kzo9I	GATC	4 cut(s)	29, 462, 468, 585
MaeI	CTAG	3 cut(s)	285, 524, 536
MaeII	ACGT	2 cut(s)	306, 312
MaeIII	GTNAC	2 cut(s)	439, 597
MalI	GATC	4 cut(s)	31, 464, 470, 587
MboI	GATC	4 cut(s)	29, 462, 468, 585
MboII	GAAGA	5 cut(s)	127, 241, 414, 415, 562
MflI	RGATCY	3 cut(s)	29, 468, 585
MhlI	GDGCHC	2 cut(s)	160, 292
MluCI	AATT	1 cut(s)	510
MlyI	GAGTC	1 cut(s)	303
MmeI	TCCRAC	2 cut(s)	45, 379
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	552
MspI	CCGG	3 cut(s)	179, 243, 272
MwoI	GCNNNNNNNGC	3 cut(s)	119, 164, 524
NdeII	GATC	4 cut(s)	29, 462, 468, 585
NlaIII	CATG	4 cut(s)	8, 62, 283, 533
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	439
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
NspV	TTCGAA	1 cut(s)	138
PaeI	GCATGC	1 cut(s)	8
PaeR7I	CTCGAG	1 cut(s)	291
PagI	TCATGA	1 cut(s)	529
PcsI	WCGNNNNNNNCGW	1 cut(s)	348
PfeI	GAWTC	4 cut(s)	84, 246, 257, 344
PkrI	GCNGC	1 cut(s)	231
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
PsiI	TTATAA	1 cut(s)	700
Psp1406I	AACGTT	1 cut(s)	312
PspFI	CCCAGC	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	157
PspXI	VCTCGAGB	1 cut(s)	291
PsuI	RGATCY	3 cut(s)	29, 468, 585
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SaqAI	TTAA	1 cut(s)	552
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	4 cut(s)	29, 462, 468, 585
SchI	GAGTC	1 cut(s)	303
SduI	GDGCHC	2 cut(s)	160, 292
Sfr274I	CTCGAG	1 cut(s)	291
SfuI	TTCGAA	1 cut(s)	138
SlaI	CTCGAG	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	291
SmoI	CTYRAG	1 cut(s)	291
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	1 cut(s)	510
SsiI	CCGC	1 cut(s)	230
SspMI	CTAG	3 cut(s)	285, 524, 536
TaaI	ACNGT	1 cut(s)	416
TaiI	ACGT	2 cut(s)	309, 315
TaqI	TCGA	4 cut(s)	138, 292, 426, 690
TasI	AATT	1 cut(s)	510
TatI	WGTACW	1 cut(s)	411
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	4 cut(s)	84, 246, 257, 344
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	1 cut(s)	439
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	4 cut(s)	390, 465, 562, 635
TspGWI	ACGGA	1 cut(s)	578
TspRI	CASTG	1 cut(s)	421
XceI	RCATGY	1 cut(s)	8
XhoI	CTCGAG	1 cut(s)	291
XmiI	GTMKAC	2 cut(s)	297, 564
XspI	CTAG	3 cut(s)	285, 524, 536
ZraI	GACGTC	1 cut(s)	307
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.