Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004189.1

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Forward (+)

186881 .. 190333

Gene Structure 3453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgatttggaaattgatccctgagaccatccagccattcatgagcttcaaatgcgttccggcatatttgacatcggagcaaccgattcagaaactccatgtggtactggaactttgcgcatgcaacaaaaggggcactgtgtccagaataatagcccaattgaaatcacagaagctcatcgaggaattgcatttgcctaatctaatagctgctaccaaagaggaggaaggaggatatcgtttgatcgagggaatcccgactctggaacatgcaaagctcaaagctagggtggaggttttgcagagaaatcaatgtcaatttatggggaaagacatccaatccttaagtatgaaagatcttcagaatttggagcagcaacttgattctgctgtgaagcacgtgaggtctagaaaggtaatgatgccggagcatcaccacgcctcaatttcaagtgacagccccctcaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

156

Amino Acids

17.8

Weight (kDa)

8.91

Isoelectric Point (pI)

56.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	89 - 140	4.2e-17	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	118
AclWI	GGATC	1 cut(s)	10
AcsI	RAATTY	1 cut(s)	364
AcuI	CTGAAG	1 cut(s)	344
AcvI	CACGTG	1 cut(s)	400
AfaI	GTAC	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	262
AflII	CTTAAG	1 cut(s)	343
AgsI	TTSAA	3 cut(s)	49, 163, 450
AluBI	AGCT	5 cut(s)	45, 175, 209, 277, 284
AluI	AGCT	5 cut(s)	45, 175, 209, 277, 284
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	10
ApeKI	GCWGC	2 cut(s)	209, 373
ApoI	RAATTY	1 cut(s)	364
AspLEI	GCGC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	425
BaeGI	GKGCMC	1 cut(s)	137
BbrPI	CACGTG	1 cut(s)	400
BbvI	GCAGC	2 cut(s)	196, 385
BccI	CCATC	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	2 cut(s)	285, 408
BfrI	CTTAAG	1 cut(s)	343
BglII	AGATCT	1 cut(s)	355
BisI	GCNGC	2 cut(s)	210, 374
BlsI	GCNGC	2 cut(s)	211, 375
BmsI	GCATC	2 cut(s)	411, 439
BsaAI	YACGTR	1 cut(s)	400
BsaI	GGTCTC	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	111
BseGI	GGATG	2 cut(s)	27, 333
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMII	CTCAG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	111
BseRI	GAGGAG	1 cut(s)	236
BseSI	GKGCMC	1 cut(s)	137
BseXI	GCAGC	2 cut(s)	196, 385
BsiSI	CCGG	2 cut(s)	59, 425
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	1 cut(s)	17
Bso31I	GGTCTC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp143I	GATC	3 cut(s)	15, 243, 355
BspCNI	CTCAG	1 cut(s)	13
BspHI	TCATGA	1 cut(s)	39
BspPI	GGATC	1 cut(s)	10
BspTI	CTTAAG	1 cut(s)	343
BspTNI	GGTCTC	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	111
BssMI	GATC	3 cut(s)	15, 243, 355
Bst4CI	ACNGT	1 cut(s)	139
BstAFI	CTTAAG	1 cut(s)	343
BstBAI	YACGTR	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	21
BstF5I	GGATG	2 cut(s)	27, 333
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	3 cut(s)	18, 246, 358
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	3 cut(s)	15, 243, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstNSI	RCATGY	2 cut(s)	123, 272
BstSLI	GKGCMC	1 cut(s)	137
BstV1I	GCAGC	2 cut(s)	196, 385
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BtsCI	GGATG	2 cut(s)	27, 333
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	121
CciI	TCATGA	1 cut(s)	39
CfoI	GCGC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	4 cut(s)	40, 98, 120, 269
CviJI	RGCY	8 cut(s)	34, 45, 155, 175, 209, 277, 284, 459
CviKI_1	RGCY	8 cut(s)	34, 45, 155, 175, 209, 277, 284, 459
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	3 cut(s)	17, 245, 357
DpnII	GATC	3 cut(s)	15, 243, 355
Eco31I	GGTCTC	1 cut(s)	17
Eco32I	GATATC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	344
Eco72I	CACGTG	1 cut(s)	400
EcoRV	GATATC	1 cut(s)	236
FaeI	CATG	4 cut(s)	43, 101, 123, 272
FaiI	YATR	7 cut(s)	41, 64, 99, 121, 270, 323, 350
FatI	CATG	4 cut(s)	39, 97, 119, 268
Fnu4HI	GCNGC	2 cut(s)	210, 374
FokI	GGATG	2 cut(s)	14, 320
Fsp4HI	GCNGC	2 cut(s)	210, 374
FspBI	CTAG	2 cut(s)	285, 408
FspI	TGCGCA	1 cut(s)	118
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	2 cut(s)	210, 374
HapII	CCGG	2 cut(s)	59, 425
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	4 cut(s)	43, 101, 123, 272
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HinfI	GANTC	4 cut(s)	85, 252, 259, 383
HpaII	CCGG	2 cut(s)	59, 425
HphI	GGTGA	1 cut(s)	425
Hpy188I	TCNGA	3 cut(s)	76, 90, 363
Hpy188III	TCNNGA	5 cut(s)	40, 144, 256, 263, 408
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	4 cut(s)	123, 190, 272, 301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	1 cut(s)	21
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	4 cut(s)	43, 101, 123, 272
HspAI	GCGC	1 cut(s)	117
Kzo9I	GATC	3 cut(s)	15, 243, 355
LmnI	GCTCC	3 cut(s)	76, 370, 427
LpnPI	CCDG	7 cut(s)	33, 44, 72, 92, 157, 248, 438
Lsp1109I	GCAGC	2 cut(s)	196, 385
LweI	GCATC	2 cut(s)	411, 439
MaeI	CTAG	2 cut(s)	285, 408
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	1 cut(s)	452
MalI	GATC	3 cut(s)	17, 245, 357
MboI	GATC	3 cut(s)	15, 243, 355
MboII	GAAGA	1 cut(s)	350
MfeI	CAATTG	1 cut(s)	158
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	6 cut(s)	11, 158, 185, 317, 364, 444
MlyI	GAGTC	1 cut(s)	253
MnlI	CCTC	8 cut(s)	175, 214, 217, 224, 241, 286, 396, 451
MseI	TTAA	1 cut(s)	344
MspCI	CTTAAG	1 cut(s)	343
MspI	CCGG	2 cut(s)	59, 425
MunI	CAATTG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	51
NdeII	GATC	3 cut(s)	15, 243, 355
NlaIII	CATG	4 cut(s)	43, 101, 123, 272
NmuCI	GTSAC	1 cut(s)	452
NsbI	TGCGCA	1 cut(s)	118
NspI	RCATGY	2 cut(s)	123, 272
PaeI	GCATGC	1 cut(s)	123
PagI	TCATGA	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PfeI	GAWTC	3 cut(s)	85, 252, 383
PkrI	GCNGC	2 cut(s)	211, 375
PleI	GAGTC	1 cut(s)	253
PmaCI	CACGTG	1 cut(s)	400
PmlI	CACGTG	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	253
Ppu21I	YACGTR	1 cut(s)	400
PspCI	CACGTG	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	2 cut(s)	210, 374
Sau3AI	GATC	3 cut(s)	15, 243, 355
SchI	GAGTC	1 cut(s)	253
SduI	GDGCHC	1 cut(s)	137
SetI	ASST	9 cut(s)	47, 177, 211, 279, 286, 297, 402, 407, 417
SfaNI	GCATC	2 cut(s)	411, 439
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
SphI	GCATGC	1 cut(s)	123
Sse9I	AATT	6 cut(s)	11, 158, 185, 317, 364, 444
SspMI	CTAG	2 cut(s)	285, 408
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	2 cut(s)	180, 246
TasI	AATT	6 cut(s)	11, 158, 185, 317, 364, 444
TfiI	GAWTC	3 cut(s)	85, 252, 383
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	2 cut(s)	209, 373
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	2 cut(s)	28, 365
TspRI	CASTG	1 cut(s)	142
Vha464I	CTTAAG	1 cut(s)	343
XapI	RAATTY	1 cut(s)	364
XbaI	TCTAGA	1 cut(s)	407
XceI	RCATGY	2 cut(s)	123, 272
XspI	CTAG	2 cut(s)	285, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.