Rmu_sc0004308.1_g000013

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004308.1
OG0003525
Physical Location & Seq
Forward (+)
57951 .. 60570
2620 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 807 bp
atgtctgtgaggagcgtttcgagttttttggtctcgagcaagcaaggggatggtggtgctggttttagcagcagcagcctcttgttgaagggctcaaaacttggatcttcttcctcttctggtctgagttttaatcagcagagaaaacccagaaaccttgtggtttctgcgttgaacgagacggtgctgactggtgttgtgttccaaccatttgaagaggtcaagaaggaggctcttgctgttcccgtggcacatcatgtttcgcttgctcgtcagtgttttgcagatgagtgtgaagctgcgataaacgagcagatcaatgtggaatacaatgtgtcgtatgtgtaccattccatgtttgcatattttgacagggacaatgttgctcttaggggcatggccaagttttacaaggaatcaagtgaggaagaaagagagcatgctgaaaaactgatgaaatatcagaatatacgtggtggaagagttaagctacactctattataaatcccccttcagaatttgagcatgttgagaagggagatgcattgtatgctatggagttagctttgtctttggagaagctgacaaatgaaaagctcttgagtttgcatagggtggcagcggagaacaatgatgctcaaatgacagagtttgtcgagagggagtttcttagtgagcaggttgaagccattaagaagatagctgagtatgtcacccagttgaggatggttggaaaaggacatggagtgtggcactttgatcaacagctccttcatcaagaggagatgctgcatcttggaaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000041 GO:0000302 GO:0003006 GO:0003674 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0015979 GO:0016020 GO:0019725 GO:0019904 GO:0022414 GO:0030001 GO:0030003 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042651 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051704 GO:0051707 GO:0055035 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0097577 GO:0098771 GO:0099402 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04216 ko04217 ko04978 map04216 map04217 map04978
Pfam Domains
Protein Families
Ferritin

Protein Analysis

268

Amino Acids

30.11

Weight (kDa)

5.9

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin PF00210 100 - 243 2e-31 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 503
Acc36I ACCTGC 1 cut(s) 670
AciI CCGC 1 cut(s) 623
AclWI GGATC 1 cut(s) 112
AcoI YGGCCR 1 cut(s) 399
AcsI RAATTY 1 cut(s) 518
AcuI CTGAAG 1 cut(s) 498
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 1 cut(s) 723
AgsI TTSAA 4 cut(s) 88, 175, 215, 686
AluBI AGCT 7 cut(s) 299, 490, 566, 583, 598, 704, 769
AluI AGCT 7 cut(s) 299, 490, 566, 583, 598, 704, 769
Alw26I GTCTC 2 cut(s) 37, 173
AlwI GGATC 1 cut(s) 112
Ama87I CYCGRG 1 cut(s) 34
AoxI GGCC 1 cut(s) 399
ApeKI GCWGC 6 cut(s) 69, 72, 75, 299, 620, 790
ApoI RAATTY 1 cut(s) 518
AsuHPI GGTGA 1 cut(s) 706
AvaI CYCGRG 1 cut(s) 34
BalI TGGCCA 1 cut(s) 401
BanII GRGCYC 1 cut(s) 95
BbvI GCAGC 6 cut(s) 81, 84, 87, 286, 632, 777
BccI CCATC 2 cut(s) 44, 721
BclI TGATCA 1 cut(s) 760
BcoDI GTCTC 2 cut(s) 37, 173
BfuAI ACCTGC 1 cut(s) 670
BisI GCNGC 6 cut(s) 70, 73, 76, 300, 621, 791
BlsI GCNGC 6 cut(s) 71, 74, 77, 301, 622, 792
BmeT110I CYCGRG 1 cut(s) 34
BmrI ACTGGG 1 cut(s) 712
BmsI GCATC 4 cut(s) 532, 625, 777, 802
BmuI ACTGGG 1 cut(s) 712
BpuEI CTTGAG 1 cut(s) 622
BsaAI YACGTR 1 cut(s) 473
BsaI GGTCTC 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 246
Bsc4I CCNNNNNNNGG 1 cut(s) 723
Bse1I ACTGG 2 cut(s) 196, 718
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 2 cut(s) 55, 732
BseLI CCNNNNNNNGG 1 cut(s) 723
BseMII CTCAG 2 cut(s) 116, 696
BseNI ACTGG 2 cut(s) 196, 718
BseRI GAGGAG 2 cut(s) 25, 797
BseXI GCAGC 6 cut(s) 81, 84, 87, 286, 632, 777
BshFI GGCC 1 cut(s) 401
BsiHKCI CYCGRG 1 cut(s) 34
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 1 cut(s) 723
BsmAI GTCTC 2 cut(s) 37, 173
BsmBI CGTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 389
BsnI GGCC 1 cut(s) 401
Bso31I GGTCTC 1 cut(s) 37
BsoBI CYCGRG 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 95
Bsp143I GATC 3 cut(s) 104, 315, 760
BspACI CCGC 1 cut(s) 623
BspANI GGCC 1 cut(s) 401
BspCNI CTCAG 2 cut(s) 117, 697
BspMI ACCTGC 1 cut(s) 670
BspPI GGATC 1 cut(s) 112
BspTNI GGTCTC 1 cut(s) 37
BsrI ACTGG 2 cut(s) 196, 718
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 3 cut(s) 104, 315, 760
Bst4CI ACNGT 1 cut(s) 184
Bst6I CTCTTC 3 cut(s) 121, 210, 475
BstAPI GCANNNNNTGC 1 cut(s) 551
BstBAI YACGTR 1 cut(s) 473
BstC8I GCNNGC 3 cut(s) 41, 267, 441
BstDEI CTNAG 4 cut(s) 125, 389, 671, 705
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 2 cut(s) 55, 732
BstKTI GATC 3 cut(s) 107, 318, 763
BstMAI GTCTC 2 cut(s) 37, 173
BstMBI GATC 3 cut(s) 104, 315, 760
BstMWI GCNNNNNNNGC 2 cut(s) 75, 551
BstNSI RCATGY 2 cut(s) 443, 530
BstV1I GCAGC 6 cut(s) 81, 84, 87, 286, 632, 777
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
BsuRI GGCC 1 cut(s) 401
BtgI CCRYGG 1 cut(s) 246
BtsCI GGATG 2 cut(s) 55, 732
BtsIMutI CAGTG 1 cut(s) 281
BveI ACCTGC 1 cut(s) 670
Cac8I GCNNGC 3 cut(s) 41, 267, 441
Csp6I GTAC 1 cut(s) 346
CviAII CATG 6 cut(s) 257, 355, 397, 440, 527, 743
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 4 cut(s) 125, 389, 671, 705
DpnI GATC 3 cut(s) 106, 317, 762
DpnII GATC 3 cut(s) 104, 315, 760
EaeI YGGCCR 1 cut(s) 399
Eam1104I CTCTTC 3 cut(s) 121, 210, 475
EarI CTCTTC 3 cut(s) 121, 210, 475
Eco24I GRGCYC 1 cut(s) 95
Eco31I GGTCTC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 498
Eco88I CYCGRG 1 cut(s) 34
EcoT22I ATGCAT 1 cut(s) 547
EcoT38I GRGCYC 1 cut(s) 95
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 6 cut(s) 260, 358, 400, 443, 530, 746
FaqI GGGAC 1 cut(s) 389
FatI CATG 6 cut(s) 256, 354, 396, 439, 526, 742
FbaI TGATCA 1 cut(s) 760
Fnu4HI GCNGC 6 cut(s) 70, 73, 76, 300, 621, 791
FokI GGATG 2 cut(s) 62, 739
FriOI GRGCYC 1 cut(s) 95
Fsp4HI GCNGC 6 cut(s) 70, 73, 76, 300, 621, 791
GluI GCNGC 6 cut(s) 70, 73, 76, 300, 621, 791
HaeIII GGCC 1 cut(s) 401
Hin1II CATG 6 cut(s) 260, 358, 400, 443, 530, 746
HinfI GANTC 1 cut(s) 416
HphI GGTGA 1 cut(s) 706
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 3 cut(s) 126, 465, 517
Hpy188III TCNNGA 5 cut(s) 34, 223, 601, 658, 779
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 5 cut(s) 82, 220, 522, 529, 782
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4IV ACGT 1 cut(s) 472
HpyCH4V TGCA 5 cut(s) 284, 362, 545, 610, 793
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 551
HpyF3I CTNAG 4 cut(s) 125, 389, 671, 705
HpySE526I ACGT 1 cut(s) 472
Hsp92II CATG 6 cut(s) 260, 358, 400, 443, 530, 746
Ksp22I TGATCA 1 cut(s) 760
Kzo9I GATC 3 cut(s) 104, 315, 760
LmnI GCTCC 2 cut(s) 12, 774
LpnPI CCDG 7 cut(s) 45, 105, 163, 177, 358, 665, 731
Lsp1109I GCAGC 6 cut(s) 81, 84, 87, 286, 632, 777
LweI GCATC 4 cut(s) 532, 625, 777, 802
MaeII ACGT 1 cut(s) 472
MaeIII GTNAC 1 cut(s) 712
MalI GATC 3 cut(s) 106, 317, 762
MboI GATC 3 cut(s) 104, 315, 760
MboII GAAGA 7 cut(s) 99, 102, 108, 227, 440, 492, 709
MflI RGATCY 1 cut(s) 104
MhlI GDGCHC 1 cut(s) 95
MlsI TGGCCA 1 cut(s) 401
MluCI AATT 2 cut(s) 518, 802
MluNI TGGCCA 1 cut(s) 401
MmeI TCCRAC 2 cut(s) 229, 712
MnlI CCTC 9 cut(s) 3, 89, 124, 211, 223, 418, 654, 717, 775
Mox20I TGGCCA 1 cut(s) 401
Mph1103I ATGCAT 1 cut(s) 547
MscI TGGCCA 1 cut(s) 401
MseI TTAA 3 cut(s) 132, 486, 693
Msp20I TGGCCA 1 cut(s) 401
MspA1I CMGCKG 1 cut(s) 623
MwoI GCNNNNNNNGC 2 cut(s) 75, 551
NdeII GATC 3 cut(s) 104, 315, 760
NlaIII CATG 6 cut(s) 260, 358, 400, 443, 530, 746
NmuCI GTSAC 1 cut(s) 712
NsiI ATGCAT 1 cut(s) 547
NspI RCATGY 2 cut(s) 443, 530
PaeI GCATGC 1 cut(s) 443
PaeR7I CTCGAG 1 cut(s) 34
PfeI GAWTC 1 cut(s) 416
PkrI GCNGC 6 cut(s) 71, 74, 77, 301, 622, 792
Ppu21I YACGTR 1 cut(s) 473
PsiI TTATAA 1 cut(s) 503
PsuI RGATCY 1 cut(s) 104
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SaqAI TTAA 3 cut(s) 132, 486, 693
SatI GCNGC 6 cut(s) 70, 73, 76, 300, 621, 791
Sau3AI GATC 3 cut(s) 104, 315, 760
SduI GDGCHC 1 cut(s) 95
SfaNI GCATC 4 cut(s) 532, 625, 777, 802
Sfr274I CTCGAG 1 cut(s) 34
SlaI CTCGAG 1 cut(s) 34
SmlI CTYRAG 2 cut(s) 34, 601
SmoI CTYRAG 2 cut(s) 34, 601
SphI GCATGC 1 cut(s) 443
Sse9I AATT 2 cut(s) 518, 802
SsiI CCGC 1 cut(s) 623
TaaI ACNGT 1 cut(s) 184
TaiI ACGT 1 cut(s) 475
TaqI TCGA 3 cut(s) 20, 35, 657
TasI AATT 2 cut(s) 518, 802
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 3 cut(s) 132, 486, 693
Tru9I TTAA 3 cut(s) 132, 486, 693
TscAI CASTG 1 cut(s) 281
TseFI GTSAC 1 cut(s) 712
TseI GCWGC 6 cut(s) 69, 72, 75, 299, 620, 790
Tsp45I GTSAC 1 cut(s) 712
TspDTI ATGAA 3 cut(s) 470, 606, 764
TspRI CASTG 1 cut(s) 281
XapI RAATTY 1 cut(s) 518
XceI RCATGY 2 cut(s) 443, 530
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XhoI CTCGAG 1 cut(s) 34
Zsp2I ATGCAT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.