Rmu_sc0005124.1_g000019

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005124.1
OG0004760
Physical Location & Seq
Reverse (-)
100347 .. 102020
1674 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 942 bp
atggcatcatcatcatcaagagccaccgccaactcccacagacccgccgccgcccacgccaacgggcccaccgcaaacggcgaccaccacaggcccaccgcaaacggcgaccaccagaggccgtcaaaccacagccacagcagcggcagcggcaacgggcaccagcactactaccccccaacgacgccgtatcggtcgtcgtcctcgtcggcttcgttcagaggctgctgctgctgcctgttcctgctcttctccctcctggcgctcctggtcctggccgtcgtgctcgtcataatcctggccgtgaaacccaagaagccgcagttcgatctccaacaagtaggagtccagtacatgggcatcaactcgcccaatcccaccaccgacccgaacccggcctcctccgcctctctctccctcagcattcgcctgctcttctccgccgagaaccccaacaaggtcggaatcaagtacggcgagtccaggttcactgtcatgtaccgcggcatccctctgggcaaggcctccgtccccggcttcttccagcaggcccacagcgtcaggcaggtcgtcgccaccatcgccgtcgatcgcgccaatctcattcaggccgacgccgccgacttaatccgcgacgcctccctcaacgaccgggtcgagctccgggtcttgggtgacgtcggcgccaagatccgcgtcttgaacatcgattcccctggcgttcagtttcactatctgggtatagaattgaggaggtcgccgccggaaaagggcaccttgctactgggaagcccaccactactccgcgtcttgaacatcgattcccctggcgttcaggtggaaactgaaaaagcatctttgaaaaggtggggagaaatggtattaaagctttggccttttcttttctttgatgatgatgatgatgacgacgatgatgagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

313

Amino Acids

33.94

Weight (kDa)

7.18

Isoelectric Point (pI)

46.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 146 - 228 5.3e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 681
Acc36I ACCTGC 1 cut(s) 556
AccB1I GGYRCC 3 cut(s) 159, 683, 773
AccB7I CCANNNNNTGG 1 cut(s) 355
AccII CGCG 5 cut(s) 504, 594, 633, 696, 807
AclWI GGATC 1 cut(s) 685
AcoI YGGCCR 2 cut(s) 276, 300
AcyI GRCGYC 5 cut(s) 185, 615, 636, 678, 684
AfaI GTAC 3 cut(s) 353, 473, 500
AfiI CCNNNNNNNGG 6 cut(s) 274, 355, 394, 457, 670, 770
AgsI TTSAA 3 cut(s) 703, 814, 862
AjnI CCWGG 7 cut(s) 258, 267, 273, 297, 482, 715, 826
AloI GAACNNNNNNTCC 6 cut(s) 383, 415, 695, 727, 806, 838
AluBI AGCT 2 cut(s) 661, 889
AluI AGCT 2 cut(s) 661, 889
Alw21I GWGCWC 2 cut(s) 288, 663
AlwI GGATC 1 cut(s) 685
AlwNI CAGNNNCTG 1 cut(s) 225
ApaI GGGCCC 1 cut(s) 69
ApeKI GCWGC 6 cut(s) 141, 147, 225, 228, 231, 234
AspLEI GCGC 3 cut(s) 265, 596, 686
AspS9I GGNCC 5 cut(s) 65, 66, 93, 271, 550
AsuC2I CCSGG 4 cut(s) 395, 534, 653, 665
AsuHPI GGTGA 1 cut(s) 686
AvaII GGWCC 1 cut(s) 271
BaeGI GKGCMC 3 cut(s) 69, 162, 776
BanI GGYRCC 3 cut(s) 159, 683, 773
BanII GRGCYC 2 cut(s) 69, 663
Bbv12I GWGCWC 2 cut(s) 288, 663
BbvCI CCTCAGC 1 cut(s) 419
BbvI GCAGC 6 cut(s) 153, 159, 212, 215, 218, 221
BccI CCATC 1 cut(s) 587
BceAI ACGGC 8 cut(s) 94, 106, 121, 172, 263, 287, 490, 569
BciT130I CCWGG 7 cut(s) 260, 269, 275, 299, 484, 717, 828
BcnI CCSGG 4 cut(s) 395, 534, 653, 665
BfoI RGCGCY 2 cut(s) 266, 687
BfuAI ACCTGC 1 cut(s) 556
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 5 cut(s) 65, 66, 93, 271, 550
BmiI GGNNCC 4 cut(s) 67, 161, 685, 775
BmrI ACTGGG 1 cut(s) 794
BmsI GCATC 4 cut(s) 14, 369, 516, 863
BmuI ACTGGG 1 cut(s) 794
Bpu10I CCTNAGC 1 cut(s) 419
BpuMI CCSGG 4 cut(s) 395, 534, 653, 665
Bsa29I ATCGAT 2 cut(s) 708, 819
BsaHI GRCGYC 5 cut(s) 185, 615, 636, 678, 684
BsaJI CCNNGG 4 cut(s) 502, 532, 715, 826
BsaXI ACNNNNNCTCC 6 cut(s) 383, 413, 786, 816, 864, 894
Bsc4I CCNNNNNNNGG 6 cut(s) 274, 355, 394, 457, 670, 770
Bse1I ACTGG 2 cut(s) 349, 789
BseBI CCWGG 7 cut(s) 260, 269, 275, 299, 484, 717, 828
BseCI ATCGAT 2 cut(s) 708, 819
BseDI CCNNGG 4 cut(s) 502, 532, 715, 826
BseGI GGATG 1 cut(s) 507
BseLI CCNNNNNNNGG 6 cut(s) 274, 355, 394, 457, 670, 770
BseMII CTCAG 1 cut(s) 433
BseNI ACTGG 2 cut(s) 349, 789
BseRI GAGGAG 2 cut(s) 391, 766
BseSI GKGCMC 3 cut(s) 69, 162, 776
BseXI GCAGC 6 cut(s) 153, 159, 212, 215, 218, 221
Bsh1236I CGCG 5 cut(s) 504, 594, 633, 696, 807
Bsh1285I CGRYCG 3 cut(s) 197, 592, 652
BshNI GGYRCC 3 cut(s) 159, 683, 773
BshVI ATCGAT 2 cut(s) 708, 819
BsiEI CGRYCG 3 cut(s) 197, 592, 652
BsiHKAI GWGCWC 2 cut(s) 288, 663
BsiSI CCGG 5 cut(s) 395, 534, 652, 664, 764
BslFI GGGAC 1 cut(s) 515
BslI CCNNNNNNNGG 6 cut(s) 274, 355, 394, 457, 670, 770
BsmFI GGGAC 1 cut(s) 515
BsmI GAATGC 1 cut(s) 423
Bsp120I GGGCCC 1 cut(s) 65
Bsp1286I GDGCHC 5 cut(s) 69, 162, 288, 663, 776
Bsp143I GATC 3 cut(s) 328, 589, 690
BspCNI CTCAG 1 cut(s) 432
BspDI ATCGAT 2 cut(s) 708, 819
BspFNI CGCG 5 cut(s) 504, 594, 633, 696, 807
BspLI GGNNCC 4 cut(s) 67, 161, 685, 775
BspMI ACCTGC 1 cut(s) 556
BspPI GGATC 1 cut(s) 685
BspQI GCTCTTC 2 cut(s) 254, 440
BspT107I GGYRCC 3 cut(s) 159, 683, 773
BsrI ACTGG 2 cut(s) 349, 789
BssECI CCNNGG 4 cut(s) 502, 532, 715, 826
BssMI GATC 3 cut(s) 328, 589, 690
BssNI GRCGYC 5 cut(s) 185, 615, 636, 678, 684
Bst2UI CCWGG 7 cut(s) 260, 269, 275, 299, 484, 717, 828
Bst4CI ACNGT 1 cut(s) 493
Bst6I CTCTTC 2 cut(s) 254, 440
BstACI GRCGYC 5 cut(s) 185, 615, 636, 678, 684
BstC8I GCNNGC 2 cut(s) 431, 549
BstDEI CTNAG 1 cut(s) 419
BstDSI CCRYGG 1 cut(s) 502
BstF5I GGATG 1 cut(s) 507
BstFNI CGCG 5 cut(s) 504, 594, 633, 696, 807
BstH2I RGCGCY 2 cut(s) 266, 687
BstHHI GCGC 3 cut(s) 265, 596, 686
BstKTI GATC 3 cut(s) 331, 592, 693
BstMBI GATC 3 cut(s) 328, 589, 690
BstMCI CGRYCG 3 cut(s) 197, 592, 652
BstMWI GCNNNNNNNGC 9 cut(s) 56, 141, 147, 150, 231, 234, 404, 581, 617
BstNI CCWGG 7 cut(s) 260, 269, 275, 299, 484, 717, 828
BstSLI GKGCMC 3 cut(s) 69, 162, 776
BstUI CGCG 5 cut(s) 504, 594, 633, 696, 807
BstV1I GCAGC 6 cut(s) 153, 159, 212, 215, 218, 221
BstX2I RGATCY 1 cut(s) 690
BstYI RGATCY 1 cut(s) 690
Bsu15I ATCGAT 2 cut(s) 708, 819
BsuTUI ATCGAT 2 cut(s) 708, 819
BtgI CCRYGG 1 cut(s) 502
BtgZI GCGATG 1 cut(s) 565
BtsCI GGATG 1 cut(s) 507
BtsIMutI CAGTG 1 cut(s) 489
BveI ACCTGC 1 cut(s) 556
Cac8I GCNNGC 2 cut(s) 431, 549
CaiI CAGNNNCTG 1 cut(s) 225
CfoI GCGC 3 cut(s) 265, 596, 686
Cfr13I GGNCC 5 cut(s) 65, 66, 93, 271, 550
Cfr42I CCGCGG 1 cut(s) 505
ClaI ATCGAT 2 cut(s) 708, 819
CseI GACGC 6 cut(s) 193, 547, 623, 644, 685, 796
Csp6I GTAC 3 cut(s) 352, 472, 499
CviAII CATG 2 cut(s) 355, 496
CviQI GTAC 3 cut(s) 352, 472, 499
DdeI CTNAG 1 cut(s) 419
DinI GGCGCC 1 cut(s) 685
DpnI GATC 3 cut(s) 330, 591, 692
DpnII GATC 3 cut(s) 328, 589, 690
EaeI YGGCCR 2 cut(s) 276, 300
Eam1104I CTCTTC 2 cut(s) 254, 440
EarI CTCTTC 2 cut(s) 254, 440
EciI GGCGGA 2 cut(s) 394, 430
Ecl136II GAGCTC 1 cut(s) 661
Eco147I AGGCCT 1 cut(s) 524
Eco24I GRGCYC 2 cut(s) 69, 663
Eco47I GGWCC 1 cut(s) 271
Eco53kI GAGCTC 1 cut(s) 661
EcoICRI GAGCTC 1 cut(s) 661
EcoRII CCWGG 7 cut(s) 258, 267, 273, 297, 482, 715, 826
EcoT38I GRGCYC 2 cut(s) 69, 663
EgeI GGCGCC 1 cut(s) 685
EheI GGCGCC 1 cut(s) 685
FaeI CATG 2 cut(s) 358, 499
FaiI YATR 4 cut(s) 293, 356, 497, 743
FalI AAGNNNNNCTT 2 cut(s) 761, 793
FaqI GGGAC 1 cut(s) 515
FatI CATG 2 cut(s) 354, 495
FauI CCCGC 1 cut(s) 52
FokI GGATG 1 cut(s) 494
FriOI GRGCYC 2 cut(s) 69, 663
GlaI GCGC 3 cut(s) 264, 595, 685
HaeII RGCGCY 2 cut(s) 266, 687
HapII CCGG 5 cut(s) 395, 534, 652, 664, 764
HgaI GACGC 6 cut(s) 193, 547, 623, 644, 685, 796
HhaI GCGC 3 cut(s) 265, 596, 686
Hin1I GRCGYC 5 cut(s) 185, 615, 636, 678, 684
Hin1II CATG 2 cut(s) 358, 499
Hin6I GCGC 3 cut(s) 263, 594, 684
HinP1I GCGC 3 cut(s) 263, 594, 684
HindIII AAGCTT 1 cut(s) 887
HinfI GANTC 5 cut(s) 345, 465, 479, 710, 821
HpaII CCGG 5 cut(s) 395, 534, 652, 664, 764
HphI GGTGA 1 cut(s) 686
Hpy166II GTNNAC 1 cut(s) 489
Hpy188I TCNGA 2 cut(s) 221, 464
Hpy188III TCNNGA 3 cut(s) 18, 700, 811
Hpy8I GTNNAC 1 cut(s) 489
HpyCH4III ACNGT 1 cut(s) 493
HpyCH4IV ACGT 1 cut(s) 678
HpyF10VI GCNNNNNNNGC 9 cut(s) 56, 141, 147, 150, 231, 234, 404, 581, 617
HpyF3I CTNAG 1 cut(s) 419
HpySE526I ACGT 1 cut(s) 678
Hsp92I GRCGYC 5 cut(s) 185, 615, 636, 678, 684
Hsp92II CATG 2 cut(s) 358, 499
HspAI GCGC 3 cut(s) 263, 594, 684
KasI GGCGCC 1 cut(s) 683
KspI CCGCGG 1 cut(s) 505
Kzo9I GATC 3 cut(s) 328, 589, 690
LguI GCTCTTC 2 cut(s) 254, 440
LmnI GCTCC 2 cut(s) 270, 666
Lsp1109I GCAGC 6 cut(s) 153, 159, 212, 215, 218, 221
LweI GCATC 4 cut(s) 14, 369, 516, 863
MaeII ACGT 1 cut(s) 678
MaeIII GTNAC 1 cut(s) 674
MalI GATC 3 cut(s) 330, 591, 692
MboI GATC 3 cut(s) 328, 589, 690
MboII GAAGA 3 cut(s) 241, 427, 532
MflI RGATCY 1 cut(s) 690
MhlI GDGCHC 5 cut(s) 69, 162, 288, 663, 776
MluCI AATT 1 cut(s) 746
Mly113I GGCGCC 1 cut(s) 684
MlyI GAGTC 2 cut(s) 354, 488
MmeI TCCRAC 2 cut(s) 358, 442
MseI TTAA 2 cut(s) 626, 884
MslI CAYNNNNRTG 1 cut(s) 494
MspA1I CMGCKG 3 cut(s) 144, 150, 504
MspI CCGG 5 cut(s) 395, 534, 652, 664, 764
Mva1269I GAATGC 1 cut(s) 423
MvaI CCWGG 7 cut(s) 260, 269, 275, 299, 484, 717, 828
MvnI CGCG 5 cut(s) 504, 594, 633, 696, 807
MwoI GCNNNNNNNGC 9 cut(s) 56, 141, 147, 150, 231, 234, 404, 581, 617
NarI GGCGCC 1 cut(s) 684
NciI CCSGG 4 cut(s) 395, 534, 653, 665
NdeII GATC 3 cut(s) 328, 589, 690
NlaIII CATG 2 cut(s) 358, 499
NlaIV GGNNCC 4 cut(s) 67, 161, 685, 775
NmeAIII GCCGAG 1 cut(s) 469
NmuCI GTSAC 1 cut(s) 674
PceI AGGCCT 1 cut(s) 524
PciSI GCTCTTC 2 cut(s) 254, 440
PcsI WCGNNNNNNNCGW 3 cut(s) 203, 212, 654
PctI GAATGC 1 cut(s) 423
PfeI GAWTC 3 cut(s) 465, 710, 821
PflFI GACNNNGTC 1 cut(s) 653
PflMI CCANNNNNTGG 1 cut(s) 355
Ple19I CGATCG 1 cut(s) 592
PleI GAGTC 2 cut(s) 353, 487
PluTI GGCGCC 1 cut(s) 687
PpsI GAGTC 2 cut(s) 353, 487
Psp124BI GAGCTC 1 cut(s) 663
Psp6I CCWGG 7 cut(s) 258, 267, 273, 297, 482, 715, 826
PspGI CCWGG 7 cut(s) 258, 267, 273, 297, 482, 715, 826
PspN4I GGNNCC 4 cut(s) 67, 161, 685, 775
PspOMI GGGCCC 1 cut(s) 65
PspPI GGNCC 5 cut(s) 65, 66, 93, 271, 550
PstNI CAGNNNCTG 1 cut(s) 225
PsuI RGATCY 1 cut(s) 690
PsyI GACNNNGTC 1 cut(s) 653
PvuI CGATCG 1 cut(s) 592
RsaI GTAC 3 cut(s) 353, 473, 500
RsaNI GTAC 3 cut(s) 352, 472, 499
RseI CAYNNNNRTG 1 cut(s) 494
SacI GAGCTC 1 cut(s) 663
SacII CCGCGG 1 cut(s) 505
SapI GCTCTTC 2 cut(s) 254, 440
SaqAI TTAA 2 cut(s) 626, 884
Sau3AI GATC 3 cut(s) 328, 589, 690
Sau96I GGNCC 5 cut(s) 65, 66, 93, 271, 550
SchI GAGTC 2 cut(s) 354, 488
SduI GDGCHC 5 cut(s) 69, 162, 288, 663, 776
SfaNI GCATC 4 cut(s) 14, 369, 516, 863
SfoI GGCGCC 1 cut(s) 685
Sfr303I CCGCGG 1 cut(s) 505
SgrBI CCGCGG 1 cut(s) 505
SinI GGWCC 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 494
Sse9I AATT 1 cut(s) 746
SseBI AGGCCT 1 cut(s) 524
SspDI GGCGCC 1 cut(s) 683
SstI GAGCTC 1 cut(s) 663
StuI AGGCCT 1 cut(s) 524
TaaI ACNGT 1 cut(s) 493
TaiI ACGT 1 cut(s) 681
TaqI TCGA 5 cut(s) 327, 588, 657, 708, 819
TaqII GACCGA 1 cut(s) 183
TasI AATT 1 cut(s) 746
TatI WGTACW 1 cut(s) 351
TauI GCSGC 8 cut(s) 50, 53, 147, 153, 322, 507, 620, 763
TfiI GAWTC 3 cut(s) 465, 710, 821
Tru1I TTAA 2 cut(s) 626, 884
Tru9I TTAA 2 cut(s) 626, 884
TscAI CASTG 1 cut(s) 496
TseFI GTSAC 1 cut(s) 674
TseI GCWGC 6 cut(s) 141, 147, 225, 228, 231, 234
Tsp45I GTSAC 1 cut(s) 674
TspGWI ACGGA 1 cut(s) 517
TspRI CASTG 1 cut(s) 496
Tth111I GACNNNGTC 1 cut(s) 653
Van91I CCANNNNNTGG 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 271
ZraI GACGTC 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.