Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005580.1

Orthogroup ID

OG0003075

Physical Location & Seq

Genomic Coordinates Reverse (-)

50366 .. 53365

Gene Structure 3000 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgttctcagctccgcccctgatatttgagaagcaggaatatgggaagatggagattgtggtggagcggaatttggggattttcgggtccaagagaggttggggattatggtggagcaaaattcaaggatgtaagccacgcttccaaagactctgtcgtgaagttcagaataatttagtcccaattcgagtcgattttgaagtcaaaggccagaggttcaaagacgccttcacttggaacccatctggtgaagagatgaagtttcctaaagtaactgttagagacttgaacctgtcttcgaattacgagagagccattgttaattccattcaggttttggtcgacagggaagaggatcaaggtttccagatatcaaagaggatgagtctaaggatgatgacattaatggatgacgaagaagaggaatatgacgatcaagaagaagaagatagtgaattagactcatccgtggtggatcgcaaggggaatgggattataagagatgataagggcaaagggatactgatagaagatgaagatgacaaggaggatagcaacgacgactcttccagtgatgatggtggaagcgaattcaaagatggtgacagtgatttgtccacgatcctcttgcggaggtcgatttggacgatattattccttccaggactcgaagacggcattttcaacctaatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006333 GO:0006337 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0031323 GO:0031326 GO:0031498 GO:0032984 GO:0032986 GO:0033554 GO:0034641 GO:0034728 GO:0043044 GO:0043170 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SNF5

Protein Analysis

231

Amino Acids

26.68

Weight (kDa)

4.47

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF5	PF04855	55 - 145	5.3e-10	SNF5 / SMARCB1 / INI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003075)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0163901 RchiOBHm_Chr4g0386381 RchiOBHm_Chr5g0025761 RchiOBHm_Chr6g0278061
rosa_laevigata	RLG00000004168 RLG00000013261 RLG00000018556 RLG00000034045
rosa_multiflora	Rmu_sc0005580.1_g000006 Rmu_sc0005879.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106940 Rroxscaffold_2G00112330 Rroxscaffold_3G00218660 Rroxscaffold_3G00241480 Rroxscaffold_4G00322650 Rroxscaffold_5G00342530 Rroxscaffold_6G00388140 Rroxscaffold_6G00388150
rosa_rugosa	Rorug03G0319600
rosa_samantha	Rh2AG389600 Rh2CG222000 Rh2CG376800 Rh2CG549900 Rh3BG348400 Rh4DG151500 Rh5AG180300 Rh5AG508200 Rh5BG295200 Rh5CG196800 Rh5DG178700 Rh5DG305000 Rh5DG357400 Rh6AG172600 Rh7AG471900 Rh7AG472000 Rh7DG351500 Rh7DG450400
rosa_wichuraiana	Rw3G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	497
AccBSI	CCGCTC	1 cut(s)	67
AccI	GTMKAC	1 cut(s)	342
AciI	CCGC	3 cut(s)	14, 67, 631
AclWI	GGATC	3 cut(s)	363, 483, 616
AcsI	RAATTY	3 cut(s)	70, 120, 590
AcyI	GRCGYC	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	6 cut(s)	125, 200, 220, 289, 595, 685
AjnI	CCWGG	1 cut(s)	661
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	3 cut(s)	363, 483, 616
AoxI	GGCC	1 cut(s)	208
ApoI	RAATTY	3 cut(s)	70, 120, 590
ArsI	GACNNNNNNTTYG	2 cut(s)	139, 171
AseI	ATTAAT	1 cut(s)	404
AspS9I	GGNCC	1 cut(s)	87
AsuHPI	GGTGA	2 cut(s)	260, 614
AsuII	TTCGAA	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	87
BbsI	GAAGAC	2 cut(s)	288, 678
BccI	CCATC	4 cut(s)	43, 250, 572, 593
BceAI	ACGGC	1 cut(s)	691
BcgI	CGANNNNNNTGC	2 cut(s)	610, 644
BciT130I	CCWGG	1 cut(s)	663
BciVI	GTATCC	1 cut(s)	513
BcoDI	GTCTC	1 cut(s)	276
BfuI	GTATCC	1 cut(s)	513
Bme1390I	CCNGG	1 cut(s)	663
Bme18I	GGWCC	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	2 cut(s)	88, 239
BmrFI	CCNGG	1 cut(s)	663
BpiI	GAAGAC	2 cut(s)	288, 678
Bpu14I	TTCGAA	1 cut(s)	299
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	468
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	570
BseBI	CCWGG	1 cut(s)	663
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	5 cut(s)	134, 387, 399, 415, 464
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	1 cut(s)	570
BshFI	GGCC	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmAI	GTCTC	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	210
Bsp119I	TTCGAA	1 cut(s)	299
Bsp143I	GATC	4 cut(s)	355, 433, 475, 621
BspACI	CCGC	3 cut(s)	14, 67, 631
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	1 cut(s)	20
BspLI	GGNNCC	2 cut(s)	88, 239
BspPI	GGATC	3 cut(s)	363, 483, 616
BspT104I	TTCGAA	1 cut(s)	299
BsrBI	CCGCTC	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	570
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	4 cut(s)	355, 433, 475, 621
BssNI	GRCGYC	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	663
Bst4CI	ACNGT	2 cut(s)	277, 608
Bst6I	CTCTTC	4 cut(s)	246, 345, 414, 571
BstACI	GRCGYC	1 cut(s)	225
BstBI	TTCGAA	1 cut(s)	299
BstDEI	CTNAG	2 cut(s)	7, 389
BstDSI	CCRYGG	1 cut(s)	468
BstF5I	GGATG	5 cut(s)	134, 387, 399, 415, 464
BstKTI	GATC	4 cut(s)	358, 436, 478, 624
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	4 cut(s)	355, 433, 475, 621
BstNI	CCWGG	1 cut(s)	663
BstSCI	CCNGG	1 cut(s)	661
BstV2I	GAAGAC	2 cut(s)	288, 678
BsuI	GTATCC	1 cut(s)	513
BsuRI	GGCC	1 cut(s)	210
BtgI	CCRYGG	1 cut(s)	468
BtsCI	GGATG	5 cut(s)	134, 387, 399, 415, 464
BtsIMutI	CAGTG	2 cut(s)	577, 613
Cfr13I	GGNCC	1 cut(s)	87
CseI	GACGC	1 cut(s)	233
CviJI	RGCY	4 cut(s)	11, 136, 210, 314
CviKI_1	RGCY	4 cut(s)	11, 136, 210, 314
DdeI	CTNAG	2 cut(s)	7, 389
DpnI	GATC	4 cut(s)	357, 435, 477, 623
DpnII	GATC	4 cut(s)	355, 433, 475, 621
Eam1104I	CTCTTC	4 cut(s)	246, 345, 414, 571
EarI	CTCTTC	4 cut(s)	246, 345, 414, 571
Eco32I	GATATC	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	87
EcoRI	GAATTC	1 cut(s)	590
EcoRII	CCWGG	1 cut(s)	661
EcoRV	GATATC	1 cut(s)	372
FaiI	YATR	4 cut(s)	42, 109, 429, 497
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FaqI	GGGAC	1 cut(s)	164
FblI	GTMKAC	1 cut(s)	342
FokI	GGATG	5 cut(s)	141, 394, 406, 422, 451
HaeIII	GGCC	1 cut(s)	210
HgaI	GACGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	225
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	6 cut(s)	150, 189, 385, 461, 563, 666
HphI	GGTGA	2 cut(s)	260, 614
Hpy166II	GTNNAC	2 cut(s)	343, 618
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	3 cut(s)	158, 367, 437
Hpy8I	GTNNAC	2 cut(s)	343, 618
Hpy99I	CGWCG	1 cut(s)	563
HpyAV	CCTTC	2 cut(s)	238, 668
HpyCH4III	ACNGT	2 cut(s)	277, 608
HpyF3I	CTNAG	2 cut(s)	7, 389
Hsp92I	GRCGYC	1 cut(s)	225
Kzo9I	GATC	4 cut(s)	355, 433, 475, 621
LmnI	GCTCC	3 cut(s)	16, 64, 114
MaeIII	GTNAC	2 cut(s)	271, 602
MalI	GATC	4 cut(s)	357, 435, 477, 623
MbiI	CCGCTC	1 cut(s)	67
MboI	GATC	4 cut(s)	355, 433, 475, 621
MluCI	AATT	8 cut(s)	70, 120, 172, 183, 301, 322, 455, 590
MlyI	GAGTC	6 cut(s)	144, 198, 394, 455, 557, 660
MnlI	CCTC	8 cut(s)	89, 207, 346, 372, 415, 541, 627, 635
MseI	TTAA	2 cut(s)	321, 404
MspR9I	CCNGG	1 cut(s)	663
MvaI	CCWGG	1 cut(s)	663
NdeII	GATC	4 cut(s)	355, 433, 475, 621
NlaIV	GGNNCC	2 cut(s)	88, 239
NmuCI	GTSAC	1 cut(s)	602
NspV	TTCGAA	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	1 cut(s)	644
PflFI	GACNNNGTC	1 cut(s)	153
PfoI	TCCNGGA	1 cut(s)	661
PleI	GAGTC	6 cut(s)	144, 197, 393, 455, 557, 660
PpsI	GAGTC	6 cut(s)	144, 197, 393, 455, 557, 660
PshBI	ATTAAT	1 cut(s)	404
PsiI	TTATAA	1 cut(s)	497
Psp6I	CCWGG	1 cut(s)	661
PspGI	CCWGG	1 cut(s)	661
PspN4I	GGNNCC	2 cut(s)	88, 239
PspPI	GGNCC	1 cut(s)	87
PsyI	GACNNNGTC	1 cut(s)	153
SalI	GTCGAC	1 cut(s)	341
SaqAI	TTAA	2 cut(s)	321, 404
Sau3AI	GATC	4 cut(s)	355, 433, 475, 621
Sau96I	GGNCC	1 cut(s)	87
SchI	GAGTC	6 cut(s)	144, 198, 394, 455, 557, 660
ScrFI	CCNGG	1 cut(s)	663
SetI	ASST	8 cut(s)	13, 100, 218, 294, 336, 364, 638, 690
SfuI	TTCGAA	1 cut(s)	299
SinI	GGWCC	1 cut(s)	87
Sse9I	AATT	8 cut(s)	70, 120, 172, 183, 301, 322, 455, 590
SsiI	CCGC	3 cut(s)	14, 67, 631
StyD4I	CCNGG	1 cut(s)	661
TaaI	ACNGT	2 cut(s)	277, 608
TaqI	TCGA	6 cut(s)	187, 192, 299, 342, 638, 669
TasI	AATT	8 cut(s)	70, 120, 172, 183, 301, 322, 455, 590
Tru1I	TTAA	2 cut(s)	321, 404
Tru9I	TTAA	2 cut(s)	321, 404
TscAI	CASTG	2 cut(s)	577, 613
TseFI	GTSAC	1 cut(s)	602
Tsp45I	GTSAC	1 cut(s)	602
TspDTI	ATGAA	2 cut(s)	272, 549
TspGWI	ACGGA	1 cut(s)	457
TspRI	CASTG	2 cut(s)	577, 613
Tth111I	GACNNNGTC	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	87
VspI	ATTAAT	1 cut(s)	404
XapI	RAATTY	3 cut(s)	70, 120, 590
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XmiI	GTMKAC	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.