Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005879.1

Orthogroup ID

OG0003075

Physical Location & Seq

Genomic Coordinates Forward (+)

63174 .. 65996

Gene Structure 2823 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atgaagaaaagctggctggcggtggagtcgactagaggcgtttgcgtcggcagagagagagagacggagcttggggatgggattgggagtgggatcgagcttgaggaagggacatggagcgaagaagcattcgaatttaggttgggggcggaggaggaagatttgatgataaaggagccctgccataagagaatgcatatgactaaggataaggcagtgaataagaaaagcaaagaagaagataaagcaagctgctcttcatcttcttcgaccgctggaatatgggaagatggagattgtggtggagcggaattctgggattttcaggtccaagagaggttagggattactgtgaagcagaattcaaggatgccaacttcccataatttagtcccaattcgggtcgatttagaagtcaaaggccagaggttcaaagacgccttcacttggaacccatatggtgaagagatgaagtttgctaaagtaactgttagagacttgaacctccataccagcctcgcttcaatcagcagcgccgccgaacttcaagaaaacacagcaaaccaaggcttctgccactgggtgccatcgacggcaactgctaaaacaaagctctgccacgagcaaagttcagcaaacatctccagccaatcattaccgctgaccatgcccagcactcaatcattaccgctggccaagagctccgccgtccatgatccgctgatgtccgccgctaggagcaactgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006333 GO:0006337 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0031323 GO:0031326 GO:0031498 GO:0032984 GO:0032986 GO:0033554 GO:0034641 GO:0034728 GO:0043044 GO:0043170 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SNF5

Protein Analysis

249

Amino Acids

27.49

Weight (kDa)

5.58

Isoelectric Point (pI)

57.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF5	PF04855	127 - 173	1.5e-08	SNF5 / SMARCB1 / INI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003075)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0163901 RchiOBHm_Chr4g0386381 RchiOBHm_Chr5g0025761 RchiOBHm_Chr6g0278061
rosa_laevigata	RLG00000004168 RLG00000013261 RLG00000018556 RLG00000034045
rosa_multiflora	Rmu_sc0005580.1_g000006 Rmu_sc0005879.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106940 Rroxscaffold_2G00112330 Rroxscaffold_3G00218660 Rroxscaffold_3G00241480 Rroxscaffold_4G00322650 Rroxscaffold_5G00342530 Rroxscaffold_6G00388140 Rroxscaffold_6G00388150
rosa_rugosa	Rorug03G0319600
rosa_samantha	Rh2AG389600 Rh2CG222000 Rh2CG376800 Rh2CG549900 Rh3BG348400 Rh4DG151500 Rh5AG180300 Rh5AG508200 Rh5BG295200 Rh5CG196800 Rh5DG178700 Rh5DG305000 Rh5DG357400 Rh6AG172600 Rh7AG471900 Rh7AG472000 Rh7DG351500 Rh7DG450400
rosa_wichuraiana	Rw3G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	583
AccBSI	CCGCTC	1 cut(s)	308
AccI	GTMKAC	1 cut(s)	29
AclWI	GGATC	2 cut(s)	101, 710
AcoI	YGGCCR	1 cut(s)	693
AcsI	RAATTY	3 cut(s)	134, 311, 361
AcyI	GRCGYC	1 cut(s)	438
AdeI	CACNNNGTG	1 cut(s)	583
AfiI	CCNNNNNNNGG	3 cut(s)	400, 447, 735
AgsI	TTSAA	5 cut(s)	366, 433, 502, 525, 548
AluBI	AGCT	6 cut(s)	12, 70, 100, 252, 613, 702
AluI	AGCT	6 cut(s)	12, 70, 100, 252, 613, 702
Alw21I	GWGCWC	1 cut(s)	704
Alw26I	GTCTC	2 cut(s)	56, 489
AlwI	GGATC	2 cut(s)	101, 710
AoxI	GGCC	2 cut(s)	421, 693
ApeKI	GCWGC	2 cut(s)	252, 531
ApoI	RAATTY	3 cut(s)	134, 311, 361
AspLEI	GCGC	1 cut(s)	536
AspS9I	GGNCC	1 cut(s)	328
AsuHPI	GGTGA	1 cut(s)	473
AsuII	TTCGAA	1 cut(s)	132
AvaII	GGWCC	1 cut(s)	328
BalI	TGGCCA	1 cut(s)	695
BanI	GGYRCC	1 cut(s)	583
BanII	GRGCYC	2 cut(s)	180, 704
BauI	CACGAG	1 cut(s)	620
Bbv12I	GWGCWC	1 cut(s)	704
BbvI	GCAGC	2 cut(s)	239, 543
BccI	CCATC	3 cut(s)	71, 284, 595
BceAI	ACGGC	2 cut(s)	609, 692
BcoDI	GTCTC	2 cut(s)	56, 489
BfaI	CTAG	3 cut(s)	33, 735, 748
BfoI	RGCGCY	1 cut(s)	537
BisI	GCNGC	4 cut(s)	253, 532, 537, 732
BlsI	GCNGC	4 cut(s)	254, 533, 538, 733
Bme18I	GGWCC	1 cut(s)	328
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	3 cut(s)	177, 452, 585
BmrI	ACTGGG	1 cut(s)	589
BmsI	GCATC	1 cut(s)	360
BmuI	ACTGGG	1 cut(s)	589
BpmI	CTGGAG	1 cut(s)	628
Bpu14I	TTCGAA	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	438
BsaJI	CCNNGG	1 cut(s)	565
Bsc4I	CCNNNNNNNGG	3 cut(s)	400, 447, 735
Bse1I	ACTGG	1 cut(s)	584
BseDI	CCNNGG	1 cut(s)	565
BseGI	GGATG	2 cut(s)	82, 375
BseLI	CCNNNNNNNGG	3 cut(s)	400, 447, 735
BseNI	ACTGG	1 cut(s)	584
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	2 cut(s)	239, 543
BseYI	CCCAGC	1 cut(s)	671
Bsh1285I	CGRYCG	1 cut(s)	273
BshFI	GGCC	2 cut(s)	423, 695
BshNI	GGYRCC	1 cut(s)	583
BsiEI	CGRYCG	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	704
BslFI	GGGAC	2 cut(s)	124, 377
BslI	CCNNNNNNNGG	3 cut(s)	400, 447, 735
BsmAI	GTCTC	2 cut(s)	56, 489
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	2 cut(s)	124, 377
BsmI	GAATGC	2 cut(s)	128, 198
BsnI	GGCC	2 cut(s)	423, 695
Bsp119I	TTCGAA	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	180, 704
Bsp143I	GATC	2 cut(s)	93, 715
BspANI	GGCC	2 cut(s)	423, 695
BspLI	GGNNCC	3 cut(s)	177, 452, 585
BspPI	GGATC	2 cut(s)	101, 710
BspQI	GCTCTTC	1 cut(s)	262
BspT104I	TTCGAA	1 cut(s)	132
BspT107I	GGYRCC	1 cut(s)	583
BsrBI	CCGCTC	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	584
BssECI	CCNNGG	1 cut(s)	565
BssMI	GATC	2 cut(s)	93, 715
BssNI	GRCGYC	1 cut(s)	438
BssSI	CACGAG	1 cut(s)	620
BssT1I	CCWWGG	1 cut(s)	565
Bst2BI	CACGAG	1 cut(s)	620
Bst4CI	ACNGT	2 cut(s)	352, 490
Bst6I	CTCTTC	2 cut(s)	262, 459
BstACI	GRCGYC	1 cut(s)	438
BstBI	TTCGAA	1 cut(s)	132
BstC8I	GCNNGC	4 cut(s)	14, 18, 250, 693
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	82, 375
BstH2I	RGCGCY	1 cut(s)	537
BstHHI	GCGC	1 cut(s)	536
BstKTI	GATC	2 cut(s)	96, 718
BstMAI	GTCTC	2 cut(s)	56, 489
BstMBI	GATC	2 cut(s)	93, 715
BstMCI	CGRYCG	1 cut(s)	273
BstMWI	GCNNNNNNNGC	1 cut(s)	667
BstV1I	GCAGC	2 cut(s)	239, 543
BsuRI	GGCC	2 cut(s)	423, 695
BtsCI	GGATG	2 cut(s)	82, 375
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	222, 577
Cac8I	GCNNGC	4 cut(s)	14, 18, 250, 693
CfoI	GCGC	1 cut(s)	536
Cfr13I	GGNCC	1 cut(s)	328
CseI	GACGC	2 cut(s)	34, 446
CviAII	CATG	3 cut(s)	114, 667, 713
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	2 cut(s)	95, 717
DpnII	GATC	2 cut(s)	93, 715
DraIII	CACNNNGTG	1 cut(s)	583
EaeI	YGGCCR	1 cut(s)	693
Eam1104I	CTCTTC	2 cut(s)	262, 459
EarI	CTCTTC	2 cut(s)	262, 459
EciI	GGCGGA	3 cut(s)	164, 694, 718
Ecl136II	GAGCTC	1 cut(s)	702
Eco130I	CCWWGG	1 cut(s)	565
Eco24I	GRGCYC	2 cut(s)	180, 704
Eco47I	GGWCC	1 cut(s)	328
Eco53kI	GAGCTC	1 cut(s)	702
EcoICRI	GAGCTC	1 cut(s)	702
EcoRI	GAATTC	2 cut(s)	311, 361
EcoT14I	CCWWGG	1 cut(s)	565
EcoT22I	ATGCAT	1 cut(s)	198
EcoT38I	GRGCYC	2 cut(s)	180, 704
ErhI	CCWWGG	1 cut(s)	565
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	3 cut(s)	117, 670, 716
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FaqI	GGGAC	2 cut(s)	124, 377
FatI	CATG	3 cut(s)	113, 666, 712
FauNDI	CATATG	2 cut(s)	198, 457
FblI	GTMKAC	1 cut(s)	29
Fnu4HI	GCNGC	4 cut(s)	253, 532, 537, 732
FokI	GGATG	2 cut(s)	89, 382
FriOI	GRGCYC	2 cut(s)	180, 704
Fsp4HI	GCNGC	4 cut(s)	253, 532, 537, 732
FspBI	CTAG	3 cut(s)	33, 735, 748
GlaI	GCGC	1 cut(s)	535
GluI	GCNGC	4 cut(s)	253, 532, 537, 732
GsaI	CCCAGC	1 cut(s)	675
GsuI	CTGGAG	1 cut(s)	628
HaeII	RGCGCY	1 cut(s)	537
HaeIII	GGCC	2 cut(s)	423, 695
HgaI	GACGC	2 cut(s)	34, 446
HhaI	GCGC	1 cut(s)	536
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	3 cut(s)	117, 670, 716
Hin6I	GCGC	1 cut(s)	534
HinP1I	GCGC	1 cut(s)	534
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	1 cut(s)	26
HphI	GGTGA	1 cut(s)	473
Hpy166II	GTNNAC	1 cut(s)	30
Hpy188III	TCNNGA	1 cut(s)	548
Hpy8I	GTNNAC	1 cut(s)	30
Hpy99I	CGWCG	2 cut(s)	50, 595
HpyAV	CCTTC	2 cut(s)	101, 451
HpyCH4III	ACNGT	2 cut(s)	352, 490
HpyCH4V	TGCA	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	667
HpyF3I	CTNAG	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	3 cut(s)	117, 670, 716
HspAI	GCGC	1 cut(s)	534
Kzo9I	GATC	2 cut(s)	93, 715
LguI	GCTCTTC	1 cut(s)	262
LmnI	GCTCC	6 cut(s)	67, 117, 175, 305, 707, 738
Lsp1109I	GCAGC	2 cut(s)	239, 543
LweI	GCATC	1 cut(s)	360
MaeI	CTAG	3 cut(s)	33, 735, 748
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	2 cut(s)	95, 717
MbiI	CCGCTC	1 cut(s)	308
MboI	GATC	2 cut(s)	93, 715
MhlI	GDGCHC	2 cut(s)	180, 704
MlsI	TGGCCA	1 cut(s)	695
MluCI	AATT	5 cut(s)	134, 311, 361, 385, 396
MluNI	TGGCCA	1 cut(s)	695
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	8 cut(s)	29, 97, 145, 148, 330, 420, 515, 527
Mox20I	TGGCCA	1 cut(s)	695
Mph1103I	ATGCAT	1 cut(s)	198
MscI	TGGCCA	1 cut(s)	695
Msp20I	TGGCCA	1 cut(s)	695
MspA1I	CMGCKG	4 cut(s)	275, 661, 691, 721
Mva1269I	GAATGC	2 cut(s)	128, 198
MwoI	GCNNNNNNNGC	1 cut(s)	667
NdeI	CATATG	2 cut(s)	198, 457
NdeII	GATC	2 cut(s)	93, 715
NlaIII	CATG	3 cut(s)	117, 670, 716
NlaIV	GGNNCC	3 cut(s)	177, 452, 585
NsiI	ATGCAT	1 cut(s)	198
NspV	TTCGAA	1 cut(s)	132
PciSI	GCTCTTC	1 cut(s)	262
PctI	GAATGC	2 cut(s)	128, 198
PkrI	GCNGC	4 cut(s)	254, 533, 538, 733
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
Psp124BI	GAGCTC	1 cut(s)	704
PspFI	CCCAGC	1 cut(s)	671
PspN4I	GGNNCC	3 cut(s)	177, 452, 585
PspPI	GGNCC	1 cut(s)	328
SacI	GAGCTC	1 cut(s)	704
SalI	GTCGAC	1 cut(s)	28
SapI	GCTCTTC	1 cut(s)	262
SatI	GCNGC	4 cut(s)	253, 532, 537, 732
Sau3AI	GATC	2 cut(s)	93, 715
Sau96I	GGNCC	1 cut(s)	328
SchI	GAGTC	1 cut(s)	35
SduI	GDGCHC	2 cut(s)	180, 704
SfaNI	GCATC	1 cut(s)	360
SfuI	TTCGAA	1 cut(s)	132
SinI	GGWCC	1 cut(s)	328
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	5 cut(s)	134, 311, 361, 385, 396
SspMI	CTAG	3 cut(s)	33, 735, 748
SstI	GAGCTC	1 cut(s)	704
StyI	CCWWGG	1 cut(s)	565
TaaI	ACNGT	2 cut(s)	352, 490
TaqI	TCGA	6 cut(s)	29, 96, 132, 269, 405, 590
TasI	AATT	5 cut(s)	134, 311, 361, 385, 396
TauI	GCSGC	2 cut(s)	539, 734
TscAI	CASTG	2 cut(s)	222, 584
TseI	GCWGC	2 cut(s)	252, 531
TspDTI	ATGAA	3 cut(s)	17, 249, 485
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	2 cut(s)	222, 584
VpaK11BI	GGWCC	1 cut(s)	328
XapI	RAATTY	3 cut(s)	134, 311, 361
XmiI	GTMKAC	1 cut(s)	29
XspI	CTAG	3 cut(s)	33, 735, 748
Zsp2I	ATGCAT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.