Rmu_sc0006417.1_g000008

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006417.1
OG0005193
Physical Location & Seq
Reverse (-)
74980 .. 75531
552 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 552 bp
atgaatctgcagattgaagctctacaagagaaggggagaagaagacgtcggggctcaattcctggtcgcaaatataaagatagacaattactgcaaggccacgaaacactgttcaaagattattttgcagaaaatcctgttcatgaagaagttgtatttcggagaaggtttcggatgcatcaagctcttttaattaatattctagctgcagtagaagctcatgactcatattttgttcaaaaaagggactcagcaggacgtcttgggctatcatttctacaaaaagttaccgctgcaatgaggatgcttgcgtatggaattggggcagatgctgtggatgactatcttagaatctgtgaaagcactgcaattgaagctatgaaaaggtttgtccaagctgttatctctgtatttggagctaaatacttaagaaagccaacttctgatgatatttccagattgttattgattggtgagagtcgtggatttcctggaatgcttggtagtatcgattgtatgcactggaagtggaagaattgtccggttgcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

183

Amino Acids

20.99

Weight (kDa)

9.77

Isoelectric Point (pI)

63.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_tran PF04827 141 - 183 1.4e-18 Plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 49, 262
AciI CCGC 1 cut(s) 291
AcyI GRCGYC 2 cut(s) 46, 259
AflII CTTAAG 1 cut(s) 427
AgsI TTSAA 4 cut(s) 17, 115, 239, 374
AjnI CCWGG 2 cut(s) 61, 490
AluBI AGCT 7 cut(s) 20, 185, 206, 218, 377, 398, 419
AluI AGCT 7 cut(s) 20, 185, 206, 218, 377, 398, 419
AlwNI CAGNNNCTG 1 cut(s) 332
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 2 cut(s) 206, 293
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
AseI ATTAAT 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 485
BanII GRGCYC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 49
BbvI GCAGC 2 cut(s) 193, 280
BciT130I CCWGG 2 cut(s) 63, 492
BfaI CTAG 1 cut(s) 203
BfmI CTRYAG 2 cut(s) 8, 207
BfrI CTTAAG 1 cut(s) 427
BisI GCNGC 2 cut(s) 207, 294
BlsI GCNGC 2 cut(s) 208, 295
Bme1390I CCNGG 2 cut(s) 63, 492
BmrFI CCNGG 2 cut(s) 63, 492
BmsI GCATC 4 cut(s) 165, 187, 294, 319
BpiI GAAGAC 1 cut(s) 49
Bsa29I ATCGAT 1 cut(s) 510
BsaBI GATNNNNATC 1 cut(s) 342
BsaHI GRCGYC 2 cut(s) 46, 259
BsaWI WCCGGW 1 cut(s) 541
Bse1I ACTGG 1 cut(s) 527
Bse3DI GCAATG 1 cut(s) 303
Bse8I GATNNNNATC 1 cut(s) 342
BseBI CCWGG 2 cut(s) 63, 492
BseCI ATCGAT 1 cut(s) 510
BseGI GGATG 3 cut(s) 180, 309, 343
BseJI GATNNNNATC 1 cut(s) 342
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 527
BseXI GCAGC 2 cut(s) 193, 280
BshFI GGCC 1 cut(s) 99
BshVI ATCGAT 1 cut(s) 510
BsiSI CCGG 1 cut(s) 542
BslFI GGGAC 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 260
BsmI GAATGC 1 cut(s) 501
BsnI GGCC 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 56
BspACI CCGC 1 cut(s) 291
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 263
BspDI ATCGAT 1 cut(s) 510
BspHI TCATGA 2 cut(s) 142, 220
BspMAI CTGCAG 2 cut(s) 12, 211
BspTI CTTAAG 1 cut(s) 427
BsrDI GCAATG 1 cut(s) 303
BsrI ACTGG 1 cut(s) 527
BssNI GRCGYC 2 cut(s) 46, 259
Bst2UI CCWGG 2 cut(s) 63, 492
Bst4CI ACNGT 1 cut(s) 111
BstACI GRCGYC 2 cut(s) 46, 259
BstAFI CTTAAG 1 cut(s) 427
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 2 cut(s) 250, 347
BstF5I GGATG 3 cut(s) 180, 309, 343
BstMWI GCNNNNNNNGC 2 cut(s) 215, 374
BstNI CCWGG 2 cut(s) 63, 492
BstSCI CCNGG 2 cut(s) 61, 490
BstSFI CTRYAG 2 cut(s) 8, 207
BstV1I GCAGC 2 cut(s) 193, 280
BstV2I GAAGAC 1 cut(s) 49
Bsu15I ATCGAT 1 cut(s) 510
BsuRI GGCC 1 cut(s) 99
BsuTUI ATCGAT 1 cut(s) 510
BtsCI GGATG 3 cut(s) 180, 309, 343
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 3 cut(s) 107, 363, 520
Cac8I GCNNGC 1 cut(s) 309
CaiI CAGNNNCTG 1 cut(s) 332
CciI TCATGA 2 cut(s) 142, 220
ClaI ATCGAT 1 cut(s) 510
CviAII CATG 3 cut(s) 143, 221, 549
DdeI CTNAG 2 cut(s) 250, 347
Eco24I GRGCYC 1 cut(s) 56
EcoRII CCWGG 2 cut(s) 61, 490
EcoT22I ATGCAT 1 cut(s) 180
EcoT38I GRGCYC 1 cut(s) 56
FaeI CATG 3 cut(s) 146, 224, 552
FaiI YATR 8 cut(s) 75, 144, 222, 229, 315, 380, 518, 550
FaqI GGGAC 1 cut(s) 260
FatI CATG 3 cut(s) 142, 220, 548
Fnu4HI GCNGC 2 cut(s) 207, 294
FokI GGATG 3 cut(s) 187, 316, 350
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 2 cut(s) 207, 294
FspBI CTAG 1 cut(s) 203
GluI GCNGC 2 cut(s) 207, 294
HaeIII GGCC 1 cut(s) 99
HapII CCGG 1 cut(s) 542
Hin1I GRCGYC 2 cut(s) 46, 259
Hin1II CATG 3 cut(s) 146, 224, 552
HinfI GANTC 5 cut(s) 4, 224, 248, 351, 478
HpaII CCGG 1 cut(s) 542
HphI GGTGA 1 cut(s) 485
Hpy188I TCNGA 3 cut(s) 162, 174, 445
Hpy188III TCNNGA 3 cut(s) 143, 221, 456
Hpy99I CGWCG 1 cut(s) 51
HpyAV CCTTC 2 cut(s) 25, 159
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4IV ACGT 2 cut(s) 46, 259
HpyCH4V TGCA 9 cut(s) 10, 94, 128, 178, 209, 296, 368, 520, 548
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 374
HpyF3I CTNAG 2 cut(s) 250, 347
HpySE526I ACGT 2 cut(s) 46, 259
Hsp92I GRCGYC 2 cut(s) 46, 259
Hsp92II CATG 3 cut(s) 146, 224, 552
LmnI GCTCC 1 cut(s) 416
LpnPI CCDG 8 cut(s) 48, 75, 150, 240, 469, 477, 504, 508
Lsp1109I GCAGC 2 cut(s) 193, 280
LweI GCATC 4 cut(s) 165, 187, 294, 319
MaeI CTAG 1 cut(s) 203
MaeII ACGT 2 cut(s) 46, 259
MaeIII GTNAC 1 cut(s) 286
MboII GAAGA 4 cut(s) 51, 54, 158, 544
MfeI CAATTG 1 cut(s) 369
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 6 cut(s) 57, 86, 192, 318, 369, 535
MlyI GAGTC 3 cut(s) 218, 242, 487
MnlI CCTC 1 cut(s) 294
Mph1103I ATGCAT 1 cut(s) 180
MseI TTAA 3 cut(s) 191, 195, 428
MspA1I CMGCKG 1 cut(s) 293
MspCI CTTAAG 1 cut(s) 427
MspI CCGG 1 cut(s) 542
MspR9I CCNGG 2 cut(s) 63, 492
MunI CAATTG 1 cut(s) 369
Mva1269I GAATGC 1 cut(s) 501
MvaI CCWGG 2 cut(s) 63, 492
MwoI GCNNNNNNNGC 2 cut(s) 215, 374
NlaIII CATG 3 cut(s) 146, 224, 552
NsiI ATGCAT 1 cut(s) 180
PacI TTAATTAA 1 cut(s) 195
PagI TCATGA 2 cut(s) 142, 220
PctI GAATGC 1 cut(s) 501
PfeI GAWTC 2 cut(s) 4, 351
PfoI TCCNGGA 1 cut(s) 490
PkrI GCNGC 2 cut(s) 208, 295
PleI GAGTC 3 cut(s) 218, 242, 486
PpsI GAGTC 3 cut(s) 218, 242, 486
PshBI ATTAAT 1 cut(s) 195
Psp6I CCWGG 2 cut(s) 61, 490
PspGI CCWGG 2 cut(s) 61, 490
PstI CTGCAG 2 cut(s) 12, 211
PstNI CAGNNNCTG 1 cut(s) 332
SaqAI TTAA 3 cut(s) 191, 195, 428
SatI GCNGC 2 cut(s) 207, 294
SchI GAGTC 3 cut(s) 218, 242, 487
ScrFI CCNGG 2 cut(s) 63, 492
SduI GDGCHC 1 cut(s) 56
SfaNI GCATC 4 cut(s) 165, 187, 294, 319
SfcI CTRYAG 2 cut(s) 8, 207
SmlI CTYRAG 1 cut(s) 427
SmoI CTYRAG 1 cut(s) 427
Sse9I AATT 6 cut(s) 57, 86, 192, 318, 369, 535
SsiI CCGC 1 cut(s) 291
SspI AATATT 1 cut(s) 199
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 2 cut(s) 61, 490
TaaI ACNGT 1 cut(s) 111
TaiI ACGT 2 cut(s) 49, 262
TaqI TCGA 1 cut(s) 510
TasI AATT 6 cut(s) 57, 86, 192, 318, 369, 535
TfiI GAWTC 2 cut(s) 4, 351
Tru1I TTAA 3 cut(s) 191, 195, 428
Tru9I TTAA 3 cut(s) 191, 195, 428
TscAI CASTG 3 cut(s) 114, 370, 527
TseI GCWGC 2 cut(s) 206, 293
TspDTI ATGAA 4 cut(s) 17, 131, 159, 395
TspRI CASTG 3 cut(s) 114, 370, 527
Vha464I CTTAAG 1 cut(s) 427
VspI ATTAAT 1 cut(s) 195
XspI CTAG 1 cut(s) 203
ZraI GACGTC 2 cut(s) 47, 260
Zsp2I ATGCAT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.