Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007122.1

Orthogroup ID

OG0002582

Physical Location & Seq

Genomic Coordinates Reverse (-)

19104 .. 28453

Gene Structure 9350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3582 bp

atgggtcggaagaagccgactgctcgtgacgaagagaatccgccgccagcgggtggtggcggaggaaaatcgaagaagaagaacctggtgatcgaagacgacgagtattccgtcggaactgagctatccgaggagagtcaagtcaaggaagagaaggttcctccgcctagtaaagggaagaagggcaagaaggggagttctaaagcttctaagggagtggatgaggacttggacgatgccgacgaggatgcagatgaggttccccaagttgttttcactgggaagaagaagggcaagtcgaagaagagtggcgggagtagcgcgttcagctcgaccagtttcgggttgcttgaggatgaggatgataaggatgctgaggatgatgagcagtctggtttaacaggcgatgatgaggaggaggatgctccggtgttgaaattttcggggaagaagaagccttcaaagtcgaccaagaaaaccggggctagttcgtttacagggtcggcttttgatgccattggggacgaaggggatagtgatggcgcggttgatgatgagagtaatgcagctgatgatcatgagaatgacgatgagcctgcaatttcttttacagggaaaaagaaggcttccaagggtggaaagaagggtgggagtgtgtttgcagcagccagctttagtgcccttgatgatgcggaggaggataaggatgaaaaaaacgatgaggatgacgatattcctcagattactttctctggtaagaaaaagaagtcatcaaaggcttcaaagaagagtggcggtaattcttttagcgcagcattgcttgatgaggaagatgatgaagatacttccgtttccaaaccaactagtgccggtgatgatacagttgaggatgaagatgcatctatgataacattcacaggtaagaagaagtcttcaaagaagaaaggtaatagtgtgtttactgcactgggtgaagatgctggggttgggagtgaaattacagatgtagttgagcccaaacaaccaactacgggaactagtaaaattgaagctgataattctaacgttagtaagaataaagatccagaaccttcaaaaagtaagaaaaagaagaagaagagtggaaggactgctcaagaagaggatgatttggataagattcttgcagagctaggtgagctttcgtcgaaacctgctgctcctcagaaagaggagacggtggaggttcagcctgctgattctcagaaagaggagaaagttgtggaggttcaacctgatgcggttgccccagttgatggttctgctgcaaaggaagctgaagaagagactgtggagtctgctgcagcaaagaagaagaaaaagaagaaggaaaaggaaaaggagaaaaaggcggcagcagcagcagcatctgtaggtgtcaaggaggaaaaacaagaacaagcaaaaattgagccagcaattgaaccaaagaagaaggaagtgaaaggcaaagcagctgaaaagaaggtgcctaaacatgttagggagatgcaagaggcccttgctaggcgacaggaagaagaagagaagaagaaaagggaagaagaggagaaactgaagaaagaagaagaggagaggcataagcaggaagaacttgagaagcaaaaggaggaggcaaagcggaagaaaaaggagagggaaaaggagaagatccaagagttgaagaaggcaggtttatataaaactcccaagcaaaaagaagaggagaagcggcgggagcaaaagagactccagttacttagggatttacctaatgcagtggagggtgtgcctcctcctaccacagacagtgaaaaaccggctaaaagacccttgtatcagaaaaagaagtcaaaaccagcaccgaatcaggtaaatggtgcagctactacgaagcctgtggaaagcacagaaggaataaaagaagaaaaccagcaggttactgttcctgagctggattctgtgggacttgagaaggatgaagagcaggaatcagttgaagtagcagaaaagctatctgaagtttctgaatctgttaaagagaatggattggaacaagaggaggatgatggtgatgatgatgaatgggatgcaaagagctgggatgatgatgctgttgttaatctttcatttaaacgtgggttttctgatgaagaggttgaacctgttgtgaataaagggatgaagcctgcagtgcagaaaaccgttccttctcaaccaataaaacctcatgatgttgagaatcagaaaaaacaagctgaggtggaagttgacaaaggtaggaagaaagatgctactgcaaagaaagaagcaccaaattcagattctgcctctaaacagagtgaagataatcttcgctctcccatttgctgcattatgggccatgttgatactggtaaaactaagcttctggattgtatccgaggcacaaatgttcaggagggtgaggctggaggtattactcaacagattggtgctacgtattttcctgcggataatatccgggagaggactaaagaactgaaagctgatgcaaagctgaaggtcccaggtctattggtcattgatacccctggccacgagtcatttactaatttaaggtcacggggttcaggtttatgtgatattgcaattttggttgttgacattatgcatggcttagagcctcaaacaatagagtcactcaatctcttgaaaatgaggaataccgaattcattgttgcattgaataaggtggacaggctctatgggtggaaaacctgccgcaaccagccaatagggaaggcaatgaagcaacaatccaaggatgtagtaaatgagttcaatatgagggtttctcagattatcactcaattcatggagcagggcttaaatactgaattgtattataagaataaagaaatgggagaaacatacagtattgtacctacaagtgccattagtggtgaagggattccagatttgttattactattggttcagtgggcccagaaaactatggttgagaaacttacttacagcaatgaaattcagtgtacggtattggaggtcaaggttattgaaggtcttgggacaacaatcgatgttgtgttggttaatggtgtgcttcatgaaggggatcaaatagtcgtttgcggcatgcagggacctattgttgcttcaattcgagctttgttgacaccacatcccatgaaagaacttcgtgtcaagaagtcttcatcgcatcacttcccctacatgacgttgtacaccaccagttgccgccttgctcgcagtcgacgcatgatgccgtaccccctcagtcatcaagccagcccatacaaatcaggccagatctccatgcccgaacctgggagacttcaagacttcgctgtgattaacctgagatctgagtcgccatctccccagtttgattcgcactcccggatttcaagtccttctatttccgatctcaatcatatctgcctggccattccccttattcacatcgagttcccatggtctagaagttgggcatggttgagcattcgatggaaaacaaaggcgttggagtgcgggtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002181 GO:0002183 GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019538 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0033290 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0070993 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 ko03013 map00195 map01100 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 IF-2

Protein Analysis

1193

Amino Acids

131.15

Weight (kDa)

5.35

Isoelectric Point (pI)

51.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	794 - 1003	3.4e-34	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21160 AT1G76720 AT1G76720 AT1G76810 AT2G27700 AT2G27700
fragaria_vesca	FvH4_2g13940 FvH4_2g13940 FvH4_2g13940 FvH4_4g36100 FvH4_4g36312
malus_domestica	MD05G1023200.v1.1 MD09G1087100.v1.1 MD10G1024100.v1.1
prunus_persica	Prupe.2G099300_v2.0.a1 Prupe.8G027900_v2.0.a1
pyrus_communis	pycom05g01470 pycom09g01240 pycom10g01600
rosa_chinensis	RchiOBHm_Chr4g0445721 RchiOBHm_Chr6g0275701
rosa_laevigata	RLG00000005714 RLG00000013337 RLG00000013444
rosa_multiflora	Rmu_co8469881.1_g000001 Rmu_sc0003637.1_g000011 Rmu_sc0003637.1_g000012 Rmu_sc0007122.1_g000003
rosa_roxburghii	Rroxscaffold_7G00193000
rosa_rugosa	Rorug04G0365200 Rorug06G0095700
rosa_samantha	Rh4AG426100 Rh4CG453100 Rh4DG434300 Rh6AG207600 Rh6BG210300 Rh6CG214100 Rh6DG203400
rosa_wichuraiana	Rw4G036490 Rw6G018100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2907
AasI	GACNNNNNNGTC	1 cut(s)	1333
Acc36I	ACCTGC	4 cut(s)	1201, 1700, 1945, 2786
AccB1I	GGYRCC	1 cut(s)	1507
AccB7I	CCANNNNNTGG	2 cut(s)	53, 1295
AccI	GTMKAC	2 cut(s)	467, 3295
AccII	CGCG	2 cut(s)	323, 545
AclI	AACGTT	1 cut(s)	1065
AclWI	GGATC	3 cut(s)	1076, 1684, 3144
AcoI	YGGCCR	2 cut(s)	2593, 3486
AcsI	RAATTY	4 cut(s)	437, 2335, 2729, 3045
AcuI	CTGAAG	4 cut(s)	1338, 1616, 2058, 2579
AdeI	CACNNNGTG	1 cut(s)	971
AfaI	GTAC	5 cut(s)	2943, 3055, 3266, 3311, 3578
AfiI	CCNNNNNNNGG	9 cut(s)	50, 53, 173, 342, 1031, 1295, 1545, 3368, 3369
AflIII	ACRYGT	1 cut(s)	1516
AhlI	ACTAGT	2 cut(s)	863, 1037
AjnI	CCWGG	5 cut(s)	84, 2566, 2590, 3367, 3483
AjuI	GAANNNNNNNTTGG	2 cut(s)	2326, 2358
Alw26I	GTCTC	4 cut(s)	1208, 1319, 1759, 3367
AlwI	GGATC	3 cut(s)	1076, 1684, 3144
AlwNI	CAGNNNCTG	2 cut(s)	1409, 2345
AoxI	GGCC	6 cut(s)	1536, 2398, 2593, 3003, 3346, 3486
ApaI	GGGCCC	1 cut(s)	3007
ApoI	RAATTY	4 cut(s)	437, 2335, 2729, 3045
Asp700I	GAANNNNTTC	1 cut(s)	2970
AspLEI	GCGC	3 cut(s)	323, 545, 812
AspS9I	GGNCC	6 cut(s)	1537, 2398, 2563, 3003, 3004, 3164
AsuC2I	CCSGG	3 cut(s)	481, 2522, 3442
AsuHPI	GGTGA	7 cut(s)	100, 884, 983, 1187, 2102, 2474, 2975
AvaII	GGWCC	2 cut(s)	2563, 3164
BaeGI	GKGCMC	2 cut(s)	682, 3007
BaeI	ACNNNNGTAYC	4 cut(s)	834, 867, 1838, 1871
BalI	TGGCCA	2 cut(s)	2595, 3488
BanI	GGYRCC	1 cut(s)	1507
BanII	GRGCYC	2 cut(s)	1017, 3007
BauI	CACGAG	2 cut(s)	24, 2597
BbsI	GAAGAC	3 cut(s)	102, 924, 3225
BbvCI	CCTCAGC	2 cut(s)	375, 2277
BccI	CCATC	5 cut(s)	533, 1289, 2081, 3424, 3543
BceAI	ACGGC	1 cut(s)	3292
BcgI	CGANNNNNNTGC	4 cut(s)	230, 264, 578, 612
BciT130I	CCWGG	5 cut(s)	86, 2568, 2592, 3369, 3485
BciVI	GTATCC	1 cut(s)	2447
BclI	TGATCA	1 cut(s)	574
BcnI	CCSGG	3 cut(s)	481, 2522, 3442
BcoDI	GTCTC	4 cut(s)	1208, 1319, 1759, 3367
BcuI	ACTAGT	2 cut(s)	863, 1037
BfaI	CTAG	8 cut(s)	168, 486, 864, 1038, 1172, 1545, 3522, 3580
BfmI	CTRYAG	3 cut(s)	1341, 1410, 2208
BfuAI	ACCTGC	4 cut(s)	1201, 1700, 1945, 2786
BfuI	GTATCC	1 cut(s)	2447
BglII	AGATCT	2 cut(s)	3351, 3404
Bme1390I	CCNGG	8 cut(s)	86, 481, 2522, 2568, 2592, 3369, 3442, 3485
Bme18I	GGWCC	2 cut(s)	2563, 3164
BmgT120I	GGNCC	6 cut(s)	1537, 2398, 2563, 3003, 3004, 3164
BmiI	GGNNCC	6 cut(s)	159, 261, 1509, 2565, 3005, 3165
BmrFI	CCNGG	8 cut(s)	86, 481, 2522, 2568, 2592, 3369, 3442, 3485
BmrI	ACTGGG	4 cut(s)	288, 977, 1283, 3418
BmuI	ACTGGG	4 cut(s)	288, 977, 1283, 3418
BpiI	GAAGAC	3 cut(s)	102, 924, 3225
BplI	GAGNNNNNCTC	2 cut(s)	2839, 2871
BpmI	CTGGAG	2 cut(s)	1754, 2490
Bpu10I	CCTNAGC	3 cut(s)	375, 1968, 2277
BpuEI	CTTGAG	4 cut(s)	371, 1119, 1655, 2009
BpuMI	CCSGG	3 cut(s)	481, 2522, 3442
Bsa29I	ATCGAT	1 cut(s)	3099
BsaAI	YACGTR	1 cut(s)	2499
BsaBI	GATNNNNATC	1 cut(s)	3471
BsaJI	CCNNGG	9 cut(s)	129, 480, 630, 2440, 2566, 2590, 2820, 3368, 3515
BsaWI	WCCGGW	1 cut(s)	427
BsaXI	ACNNNNNCTCC	1 cut(s)	3560
Bsc4I	CCNNNNNNNGG	9 cut(s)	50, 53, 173, 342, 1031, 1295, 1545, 3368, 3369
Bse118I	RCCGGY	2 cut(s)	869, 1837
Bse1I	ACTGG	8 cut(s)	283, 336, 972, 1289, 1771, 2416, 3273, 3424
Bse3DI	GCAATG	3 cut(s)	815, 2811, 3046
Bse8I	GATNNNNATC	1 cut(s)	3471
BseBI	CCWGG	5 cut(s)	86, 2568, 2592, 3369, 3485
BseCI	ATCGAT	1 cut(s)	3099
BseDI	CCNNGG	9 cut(s)	129, 480, 630, 2440, 2566, 2590, 2820, 3368, 3515
BseJI	GATNNNNATC	1 cut(s)	3471
BseLI	CCNNNNNNNGG	9 cut(s)	50, 53, 173, 342, 1031, 1295, 1545, 3368, 3369
BseMI	GCAATG	3 cut(s)	815, 2811, 3046
BseNI	ACTGG	8 cut(s)	283, 336, 972, 1289, 1771, 2416, 3273, 3424
BseSI	GKGCMC	2 cut(s)	682, 3007
BseYI	CCCAGC	2 cut(s)	980, 2118
BsgI	GTGCAG	3 cut(s)	948, 1920, 2234
Bsh1236I	CGCG	2 cut(s)	323, 545
BshFI	GGCC	6 cut(s)	1538, 2400, 2595, 3005, 3348, 3488
BshNI	GGYRCC	1 cut(s)	1507
BshVI	ATCGAT	1 cut(s)	3099
BsiSI	CCGG	6 cut(s)	428, 480, 870, 1838, 2521, 3442
BslFI	GGGAC	5 cut(s)	536, 1998, 2549, 3103, 3177
BslI	CCNNNNNNNGG	9 cut(s)	50, 53, 173, 342, 1031, 1295, 1545, 3368, 3369
BsmAI	GTCTC	4 cut(s)	1208, 1319, 1759, 3367
BsmBI	CGTCTC	1 cut(s)	1208
BsmFI	GGGAC	5 cut(s)	536, 1998, 2549, 3103, 3177
BsmI	GAATGC	1 cut(s)	3543
BsnI	GGCC	6 cut(s)	1538, 2400, 2595, 3005, 3348, 3488
Bsp120I	GGGCCC	1 cut(s)	3003
Bsp1286I	GDGCHC	3 cut(s)	682, 1017, 3007
Bsp1407I	TGTACA	1 cut(s)	3264
Bsp143I	GATC	8 cut(s)	90, 574, 1081, 1689, 3136, 3351, 3404, 3466
Bsp19I	CCATGG	1 cut(s)	3515
BspANI	GGCC	6 cut(s)	1538, 2400, 2595, 3005, 3348, 3488
BspDI	ATCGAT	1 cut(s)	3099
BspFNI	CGCG	2 cut(s)	323, 545
BspHI	TCATGA	3 cut(s)	577, 2248, 3127
BspLI	GGNNCC	6 cut(s)	159, 261, 1509, 2565, 3005, 3165
BspMAI	CTGCAG	2 cut(s)	1345, 2212
BspMI	ACCTGC	4 cut(s)	1201, 1700, 1945, 2786
BspPI	GGATC	3 cut(s)	1076, 1684, 3144
BspQI	GCTCTTC	1 cut(s)	1995
BspT107I	GGYRCC	1 cut(s)	1507
BsrDI	GCAATG	3 cut(s)	815, 2811, 3046
BsrFI	RCCGGY	2 cut(s)	869, 1837
BsrGI	TGTACA	1 cut(s)	3264
BsrI	ACTGG	8 cut(s)	283, 336, 972, 1289, 1771, 2416, 3273, 3424
BssAI	RCCGGY	2 cut(s)	869, 1837
BssECI	CCNNGG	9 cut(s)	129, 480, 630, 2440, 2566, 2590, 2820, 3368, 3515
BssMI	GATC	8 cut(s)	90, 574, 1081, 1689, 3136, 3351, 3404, 3466
BssSI	CACGAG	2 cut(s)	24, 2597
BssT1I	CCWWGG	3 cut(s)	630, 2820, 3515
Bst2BI	CACGAG	2 cut(s)	24, 2597
Bst2UI	CCWGG	5 cut(s)	86, 2568, 2592, 3369, 3485
Bst4CI	ACNGT	8 cut(s)	883, 1219, 1330, 1829, 1963, 2224, 2936, 3058
BstAUI	TGTACA	1 cut(s)	3264
BstBAI	YACGTR	1 cut(s)	2499
BstC8I	GCNNGC	9 cut(s)	48, 597, 670, 1233, 1455, 2208, 3158, 3289, 3331
BstDSI	CCRYGG	1 cut(s)	3515
BstENI	CCTNNNNNAGG	1 cut(s)	171
BstFNI	CGCG	2 cut(s)	323, 545
BstHHI	GCGC	3 cut(s)	323, 545, 812
BstKTI	GATC	8 cut(s)	93, 577, 1084, 1692, 3139, 3354, 3407, 3469
BstMAI	GTCTC	4 cut(s)	1208, 1319, 1759, 3367
BstMBI	GATC	8 cut(s)	90, 574, 1081, 1689, 3136, 3351, 3404, 3466
BstNI	CCWGG	5 cut(s)	86, 2568, 2592, 3369, 3485
BstNSI	RCATGY	2 cut(s)	1520, 3160
BstSCI	CCNGG	8 cut(s)	84, 479, 2520, 2566, 2590, 3367, 3440, 3483
BstSFI	CTRYAG	3 cut(s)	1341, 1410, 2208
BstSLI	GKGCMC	2 cut(s)	682, 3007
BstSNI	TACGTA	1 cut(s)	2499
BstUI	CGCG	2 cut(s)	323, 545
BstV2I	GAAGAC	3 cut(s)	102, 924, 3225
BstX2I	RGATCY	4 cut(s)	1081, 1689, 3351, 3404
BstYI	RGATCY	4 cut(s)	1081, 1689, 3351, 3404
Bsu15I	ATCGAT	1 cut(s)	3099
BsuI	GTATCC	1 cut(s)	2447
BsuRI	GGCC	6 cut(s)	1538, 2400, 2595, 3005, 3348, 3488
BsuTUI	ATCGAT	1 cut(s)	3099
BtgI	CCRYGG	1 cut(s)	3515
BtgZI	GCGATG	2 cut(s)	420, 3222
BtsI	GCAGTG	2 cut(s)	1803, 2217
BtsIMutI	CAGTG	7 cut(s)	276, 965, 1803, 1834, 2217, 3005, 3056
BveI	ACCTGC	4 cut(s)	1201, 1700, 1945, 2786
Cac8I	GCNNGC	9 cut(s)	48, 597, 670, 1233, 1455, 2208, 3158, 3289, 3331
CaiI	CAGNNNCTG	2 cut(s)	1409, 2345
CciI	TCATGA	3 cut(s)	577, 2248, 3127
CfoI	GCGC	3 cut(s)	323, 545, 812
Cfr10I	RCCGGY	2 cut(s)	869, 1837
Cfr13I	GGNCC	6 cut(s)	1537, 2398, 2563, 3003, 3004, 3164
ClaI	ATCGAT	1 cut(s)	3099
CseI	GACGC	1 cut(s)	3306
CsiI	ACCWGGT	1 cut(s)	84
Csp6I	GTAC	5 cut(s)	2942, 3054, 3265, 3310, 3577
CviQI	GTAC	5 cut(s)	2942, 3054, 3265, 3310, 3577
DpnI	GATC	8 cut(s)	92, 576, 1083, 1691, 3138, 3353, 3406, 3468
DpnII	GATC	8 cut(s)	90, 574, 1081, 1689, 3136, 3351, 3404, 3466
DraI	TTTAAA	1 cut(s)	2152
DraIII	CACNNNGTG	1 cut(s)	971
DrdI	GACNNNNNNGTC	1 cut(s)	1333
DseDI	GACNNNNNNGTC	1 cut(s)	1333
EaeI	YGGCCR	2 cut(s)	2593, 3486
EciI	GGCGGA	3 cut(s)	30, 75, 153
Eco105I	TACGTA	1 cut(s)	2499
Eco130I	CCWWGG	3 cut(s)	630, 2820, 3515
Eco24I	GRGCYC	2 cut(s)	1017, 3007
Eco47I	GGWCC	2 cut(s)	2563, 3164
Eco57I	CTGAAG	4 cut(s)	1338, 1616, 2058, 2579
EcoNI	CCTNNNNNAGG	1 cut(s)	171
EcoO109I	RGGNCCY	3 cut(s)	1537, 2563, 3164
EcoRI	GAATTC	1 cut(s)	2729
EcoRII	CCWGG	5 cut(s)	84, 2566, 2590, 3367, 3483
EcoT14I	CCWWGG	3 cut(s)	630, 2820, 3515
EcoT22I	ATGCAT	2 cut(s)	901, 2673
EcoT38I	GRGCYC	2 cut(s)	1017, 3007
ErhI	CCWWGG	3 cut(s)	630, 2820, 3515
Esp3I	CGTCTC	1 cut(s)	1208
FalI	AAGNNNNNCTT	4 cut(s)	1524, 1556, 2355, 2387
FaqI	GGGAC	5 cut(s)	536, 1998, 2549, 3103, 3177
FauI	CCCGC	4 cut(s)	43, 305, 1746, 3566
FbaI	TGATCA	1 cut(s)	574
FblI	GTMKAC	2 cut(s)	467, 3295
FriOI	GRGCYC	2 cut(s)	1017, 3007
FspBI	CTAG	8 cut(s)	168, 486, 864, 1038, 1172, 1545, 3522, 3580
GlaI	GCGC	3 cut(s)	322, 544, 811
GsaI	CCCAGC	2 cut(s)	984, 2122
GsuI	CTGGAG	2 cut(s)	1754, 2490
HaeIII	GGCC	6 cut(s)	1538, 2400, 2595, 3005, 3348, 3488
HapII	CCGG	6 cut(s)	428, 480, 870, 1838, 2521, 3442
HgaI	GACGC	1 cut(s)	3306
HhaI	GCGC	3 cut(s)	323, 545, 812
Hin6I	GCGC	3 cut(s)	321, 543, 810
HinP1I	GCGC	3 cut(s)	321, 543, 810
HincII	GTYRAC	5 cut(s)	468, 2290, 2662, 3195, 3296
HindII	GTYRAC	5 cut(s)	468, 2290, 2662, 3195, 3296
HindIII	AAGCTT	2 cut(s)	204, 2423
HpaII	CCGG	6 cut(s)	428, 480, 870, 1838, 2521, 3442
HphI	GGTGA	7 cut(s)	100, 884, 983, 1187, 2102, 2474, 2975
Hpy99I	CGWCG	5 cut(s)	104, 116, 245, 1189, 3300
HpyCH4III	ACNGT	8 cut(s)	883, 1219, 1330, 1829, 1963, 2224, 2936, 3058
HpyCH4IV	ACGT	4 cut(s)	1065, 2155, 2498, 3260
HpySE526I	ACGT	4 cut(s)	1065, 2155, 2498, 3260
HspAI	GCGC	3 cut(s)	321, 543, 810
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	8 cut(s)	90, 574, 1081, 1689, 3136, 3351, 3404, 3466
LguI	GCTCTTC	1 cut(s)	1995
LmnI	GCTCC	4 cut(s)	430, 1204, 1756, 2878
MabI	ACCWGGT	1 cut(s)	84
MaeI	CTAG	8 cut(s)	168, 486, 864, 1038, 1172, 1545, 3522, 3580
MaeII	ACGT	4 cut(s)	1065, 2155, 2498, 3260
MaeIII	GTNAC	5 cut(s)	26, 1773, 1957, 2619, 2697
MalI	GATC	8 cut(s)	92, 576, 1083, 1691, 3138, 3353, 3406, 3468
MboI	GATC	8 cut(s)	90, 574, 1081, 1689, 3136, 3351, 3404, 3466
MfeI	CAATTG	1 cut(s)	1458
MflI	RGATCY	4 cut(s)	1081, 1689, 3351, 3404
MhlI	GDGCHC	3 cut(s)	682, 1017, 3007
MlsI	TGGCCA	2 cut(s)	2595, 3488
MluNI	TGGCCA	2 cut(s)	2595, 3488
MlyI	GAGTC	6 cut(s)	145, 1343, 1761, 2609, 2705, 3419
MmeI	TCCRAC	2 cut(s)	94, 3546
Mox20I	TGGCCA	2 cut(s)	2595, 3488
Mph1103I	ATGCAT	2 cut(s)	901, 2673
MroXI	GAANNNNTTC	1 cut(s)	2970
MscI	TGGCCA	2 cut(s)	2595, 3488
MseI	TTAA	8 cut(s)	398, 2055, 2139, 2151, 2615, 2888, 3114, 3396
MslI	CAYNNNNRTG	1 cut(s)	582
Msp20I	TGGCCA	2 cut(s)	2595, 3488
MspA1I	CMGCKG	3 cut(s)	50, 569, 1496
MspI	CCGG	6 cut(s)	428, 480, 870, 1838, 2521, 3442
MspR9I	CCNGG	8 cut(s)	86, 481, 2522, 2568, 2592, 3369, 3442, 3485
MunI	CAATTG	1 cut(s)	1458
Mva1269I	GAATGC	1 cut(s)	3543
MvaI	CCWGG	5 cut(s)	86, 2568, 2592, 3369, 3485
MvnI	CGCG	2 cut(s)	323, 545
NciI	CCSGG	3 cut(s)	481, 2522, 3442
NcoI	CCATGG	1 cut(s)	3515
NdeII	GATC	8 cut(s)	90, 574, 1081, 1689, 3136, 3351, 3404, 3466
NlaIV	GGNNCC	6 cut(s)	159, 261, 1509, 2565, 3005, 3165
NmuCI	GTSAC	3 cut(s)	26, 2619, 2697
NsiI	ATGCAT	2 cut(s)	901, 2673
NspI	RCATGY	2 cut(s)	1520, 3160
PaeI	GCATGC	1 cut(s)	3160
PagI	TCATGA	3 cut(s)	577, 2248, 3127
PciI	ACATGT	1 cut(s)	1516
PciSI	GCTCTTC	1 cut(s)	1995
PcsI	WCGNNNNNNNCGW	3 cut(s)	99, 108, 240
PctI	GAATGC	1 cut(s)	3543
PdmI	GAANNNNTTC	1 cut(s)	2970
PflMI	CCANNNNNTGG	2 cut(s)	53, 1295
PfoI	TCCNGGA	2 cut(s)	2520, 3440
PleI	GAGTC	6 cut(s)	144, 1342, 1761, 2608, 2704, 3418
PpsI	GAGTC	6 cut(s)	144, 1342, 1761, 2608, 2704, 3418
Ppu21I	YACGTR	1 cut(s)	2499
PpuMI	RGGWCCY	2 cut(s)	2563, 3164
PscI	ACATGT	1 cut(s)	1516
PsiI	TTATAA	1 cut(s)	2907
Psp1406I	AACGTT	1 cut(s)	1065
Psp5II	RGGWCCY	2 cut(s)	2563, 3164
Psp6I	CCWGG	5 cut(s)	84, 2566, 2590, 3367, 3483
PspFI	CCCAGC	2 cut(s)	980, 2118
PspGI	CCWGG	5 cut(s)	84, 2566, 2590, 3367, 3483
PspN4I	GGNNCC	6 cut(s)	159, 261, 1509, 2565, 3005, 3165
PspOMI	GGGCCC	1 cut(s)	3003
PspPI	GGNCC	6 cut(s)	1537, 2398, 2563, 3003, 3004, 3164
PspPPI	RGGWCCY	2 cut(s)	2563, 3164
PstI	CTGCAG	2 cut(s)	1345, 2212
PstNI	CAGNNNCTG	2 cut(s)	1409, 2345
PsuI	RGATCY	4 cut(s)	1081, 1689, 3351, 3404
PvuII	CAGCTG	2 cut(s)	569, 1496
RsaI	GTAC	5 cut(s)	2943, 3055, 3266, 3311, 3578
RsaNI	GTAC	5 cut(s)	2942, 3054, 3265, 3310, 3577
RseI	CAYNNNNRTG	1 cut(s)	582
SalI	GTCGAC	2 cut(s)	466, 3294
SapI	GCTCTTC	1 cut(s)	1995
SaqAI	TTAA	8 cut(s)	398, 2055, 2139, 2151, 2615, 2888, 3114, 3396
Sau3AI	GATC	8 cut(s)	90, 574, 1081, 1689, 3136, 3351, 3404, 3466
Sau96I	GGNCC	6 cut(s)	1537, 2398, 2563, 3003, 3004, 3164
SchI	GAGTC	6 cut(s)	145, 1343, 1761, 2609, 2705, 3419
ScrFI	CCNGG	8 cut(s)	86, 481, 2522, 2568, 2592, 3369, 3442, 3485
SduI	GDGCHC	3 cut(s)	682, 1017, 3007
SexAI	ACCWGGT	1 cut(s)	84
SfcI	CTRYAG	3 cut(s)	1341, 1410, 2208
SinI	GGWCC	2 cut(s)	2563, 3164
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	4 cut(s)	350, 1134, 1634, 1988
SmoI	CTYRAG	4 cut(s)	350, 1134, 1634, 1988
SnaBI	TACGTA	1 cut(s)	2499
SpeI	ACTAGT	2 cut(s)	863, 1037
SphI	GCATGC	1 cut(s)	3160
SspMI	CTAG	8 cut(s)	168, 486, 864, 1038, 1172, 1545, 3522, 3580
StyD4I	CCNGG	8 cut(s)	84, 479, 2520, 2566, 2590, 3367, 3440, 3483
StyI	CCWWGG	3 cut(s)	630, 2820, 3515
TaaI	ACNGT	8 cut(s)	883, 1219, 1330, 1829, 1963, 2224, 2936, 3058
TaiI	ACGT	4 cut(s)	1068, 2158, 2501, 3263
TatI	WGTACW	1 cut(s)	3264
TauI	GCSGC	6 cut(s)	46, 1394, 1753, 2784, 3156, 3282
Tru1I	TTAA	8 cut(s)	398, 2055, 2139, 2151, 2615, 2888, 3114, 3396
Tru9I	TTAA	8 cut(s)	398, 2055, 2139, 2151, 2615, 2888, 3114, 3396
TscAI	CASTG	7 cut(s)	283, 972, 1803, 1834, 2217, 3005, 3056
TseFI	GTSAC	3 cut(s)	26, 2619, 2697
Tsp45I	GTSAC	3 cut(s)	26, 2619, 2697
TspGWI	ACGGA	2 cut(s)	100, 838
TspRI	CASTG	7 cut(s)	283, 972, 1803, 1834, 2217, 3005, 3056
Van91I	CCANNNNNTGG	2 cut(s)	53, 1295
VpaK11BI	GGWCC	2 cut(s)	2563, 3164
XagI	CCTNNNNNAGG	1 cut(s)	171
XapI	RAATTY	4 cut(s)	437, 2335, 2729, 3045
XbaI	TCTAGA	1 cut(s)	3521
XceI	RCATGY	2 cut(s)	1520, 3160
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2408
XmiI	GTMKAC	2 cut(s)	467, 3295
XmnI	GAANNNNTTC	1 cut(s)	2970
XspI	CTAG	8 cut(s)	168, 486, 864, 1038, 1172, 1545, 3522, 3580
Zsp2I	ATGCAT	2 cut(s)	901, 2673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.