Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007400.1

Orthogroup ID

OG0002245

Physical Location & Seq

Genomic Coordinates Reverse (-)

48854 .. 49986

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgctagaagaaggcaaaatgaaggacattgtcgactccaagctgaagatagatgacgccgacgagagggtttctaccgcgattattgttgcattgtggtgtatacagcaagacatgtctctgaggccgtcgatggccaaggttgtccaaatctttgaaggggtctgtcctgttcctcagcctccaacttcctcagcaatgatttcttcaacaatgacttcctccggaccaattgtgtcgttgcaaaagggtggaagtgtggtttggtctatagatactggtggcaaaacagttactgcaacggagttgcgggactcgggaaatttggttctgcttggggatgacaatggagtagtttggcagagttctagtcatccaactgatactctattatggaaccaggagtctcaggaaggaatgaaacttcaaagcgaaccaatctccaacaatgtgacctacaggtcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

155

Amino Acids

16.76

Weight (kDa)

4.58

Isoelectric Point (pI)

53.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	67 - 135	7.4e-11	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32300
fragaria_vesca	FvH4_2g29050 FvH4_2g29070
malus_domestica	MD00G1144200.v1.1 MD15G1121900.v1.1 MD15G1122800.v1.1 MD15G1125500.v1.1
prunus_persica	Prupe.1G481100_v2.0.a1
pyrus_communis	pycom15g10990 pycom15g11300
rosa_chinensis	RchiOBHm_Chr4g0385931 RchiOBHm_Chr6g0297921 RchiOBHm_Chr6g0297931
rosa_laevigata	RLG00000010199 RLG00000011550 RLG00000011551
rosa_multiflora	Rmu_co8186410.1_g000001 Rmu_sc0007302.1_g000003 Rmu_sc0007302.1_g000004 Rmu_sc0007400.1_g000011 Rmu_sc0011097.1_g000002 Rmu_sc0011097.1_g000003 Rmu_sc0011097.1_g000004 Rmu_sc0015868.1_g000001 Rmu_sc0030316.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333530 Rroxscaffold_7G00170060 Rroxscaffold_7G00178900 Rroxscaffold_7G00178910
rosa_rugosa	Rorug03G0303100 Rorug06G0276800
rosa_samantha	Rh4CG008200 Rh4DG007100 Rh6AG387500 Rh6BG395900 Rh6CG401600 Rh6CG401700 Rh6CG401800 Rh6DG388100
rosa_wichuraiana	Rw4G000320 Rw6G033760 Rw6G033810 Rw6G033820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	460
AccI	GTMKAC	2 cut(s)	33, 103
AccII	CGCG	1 cut(s)	80
AccIII	TCCGGA	1 cut(s)	224
AciI	CCGC	2 cut(s)	78, 310
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	65
AcyI	GRCGYC	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	66
AflIII	ACRYGT	1 cut(s)	114
AgsI	TTSAA	3 cut(s)	158, 210, 428
AjnI	CCWGG	1 cut(s)	399
AjuI	GAANNNNNNNTTGG	2 cut(s)	247, 279
AloI	GAACNNNNNNTCC	2 cut(s)	312, 344
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Alw26I	GTCTC	2 cut(s)	123, 411
AlwNI	CAGNNNCTG	1 cut(s)	296
Ama87I	CYCGRG	1 cut(s)	316
Aor13HI	TCCGGA	1 cut(s)	224
AoxI	GGCC	2 cut(s)	125, 135
ApoI	RAATTY	1 cut(s)	322
AspS9I	GGNCC	1 cut(s)	227
AvaI	CYCGRG	1 cut(s)	316
AvaII	GGWCC	1 cut(s)	227
BalI	TGGCCA	1 cut(s)	137
BbvCI	CCTCAGC	2 cut(s)	177, 193
BccI	CCATC	1 cut(s)	127
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	401
BcoDI	GTCTC	2 cut(s)	123, 411
BfaI	CTAG	2 cut(s)	5, 369
BfmI	CTRYAG	2 cut(s)	270, 457
Bme1390I	CCNGG	1 cut(s)	401
Bme18I	GGWCC	1 cut(s)	227
BmeT110I	CYCGRG	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	1 cut(s)	398
BmrFI	CCNGG	1 cut(s)	401
Bpu10I	CCTNAGC	2 cut(s)	177, 193
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	283
Bse3DI	GCAATG	1 cut(s)	204
BseAI	TCCGGA	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	2 cut(s)	346, 373
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	4 cut(s)	113, 191, 207, 422
BseNI	ACTGG	1 cut(s)	283
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	2 cut(s)	127, 137
BsiHKCI	CYCGRG	1 cut(s)	316
BsiSI	CCGG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	2 cut(s)	123, 411
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	2 cut(s)	127, 137
BsoBI	CYCGRG	1 cut(s)	316
Bsp13I	TCCGGA	1 cut(s)	224
BspACI	CCGC	2 cut(s)	78, 310
BspANI	GGCC	2 cut(s)	127, 137
BspCNI	CTCAG	4 cut(s)	114, 190, 206, 421
BspEI	TCCGGA	1 cut(s)	224
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	138
BssNAI	GTATAC	1 cut(s)	104
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	138
Bst1107I	GTATAC	1 cut(s)	104
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	1 cut(s)	292
BstACI	GRCGYC	1 cut(s)	57
BstDEI	CTNAG	5 cut(s)	122, 177, 193, 408, 465
BstF5I	GGATG	2 cut(s)	346, 373
BstFNI	CGCG	1 cut(s)	80
BstMAI	GTCTC	2 cut(s)	123, 411
BstNI	CCWGG	1 cut(s)	401
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	399
BstSFI	CTRYAG	2 cut(s)	270, 457
BstUI	CGCG	1 cut(s)	80
BstZ17I	GTATAC	1 cut(s)	104
BsuRI	GGCC	2 cut(s)	127, 137
BtsCI	GGATG	2 cut(s)	346, 373
CaiI	CAGNNNCTG	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	227
CseI	GACGC	1 cut(s)	65
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	4 cut(s)	43, 127, 137, 181
CviKI_1	RGCY	4 cut(s)	43, 127, 137, 181
DdeI	CTNAG	5 cut(s)	122, 177, 193, 408, 465
DrdI	GACNNNNNNGTC	1 cut(s)	460
DseDI	GACNNNNNNGTC	1 cut(s)	460
EaeI	YGGCCR	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	399
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	1 cut(s)	118
FaiI	YATR	4 cut(s)	104, 116, 272, 394
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	1 cut(s)	114
FauI	CCCGC	1 cut(s)	303
FblI	GTMKAC	2 cut(s)	33, 103
FokI	GGATG	2 cut(s)	353, 360
FspBI	CTAG	2 cut(s)	5, 369
HaeIII	GGCC	2 cut(s)	127, 137
HapII	CCGG	1 cut(s)	225
HgaI	GACGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	1 cut(s)	118
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	3 cut(s)	35, 314, 404
HpaII	CCGG	1 cut(s)	225
Hpy166II	GTNNAC	2 cut(s)	34, 104
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	3 cut(s)	225, 318, 410
Hpy8I	GTNNAC	2 cut(s)	34, 104
Hpy99I	CGWCG	2 cut(s)	65, 133
HpyAV	CCTTC	4 cut(s)	5, 16, 152, 407
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4V	TGCA	3 cut(s)	92, 244, 299
HpyF3I	CTNAG	5 cut(s)	122, 177, 193, 408, 465
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	118
Kpn2I	TCCGGA	1 cut(s)	224
LpnPI	CCDG	7 cut(s)	183, 238, 264, 386, 395, 413, 445
MaeI	CTAG	2 cut(s)	5, 369
MaeIII	GTNAC	2 cut(s)	292, 451
MboII	GAAGA	3 cut(s)	20, 58, 198
MfeI	CAATTG	1 cut(s)	231
MlsI	TGGCCA	1 cut(s)	137
MluCI	AATT	2 cut(s)	231, 322
MluNI	TGGCCA	1 cut(s)	137
MlyI	GAGTC	3 cut(s)	29, 308, 413
MmeI	TCCRAC	3 cut(s)	209, 401, 468
MnlI	CCTC	6 cut(s)	60, 117, 186, 192, 202, 232
Mox20I	TGGCCA	1 cut(s)	137
MroI	TCCGGA	1 cut(s)	224
MscI	TGGCCA	1 cut(s)	137
MslI	CAYNNNNRTG	1 cut(s)	97
Msp20I	TGGCCA	1 cut(s)	137
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	401
MunI	CAATTG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	401
MvnI	CGCG	1 cut(s)	80
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	1 cut(s)	398
NmuCI	GTSAC	1 cut(s)	451
NspI	RCATGY	1 cut(s)	118
PciI	ACATGT	1 cut(s)	114
PflFI	GACNNNGTC	1 cut(s)	29
PleI	GAGTC	3 cut(s)	29, 308, 412
PpsI	GAGTC	3 cut(s)	29, 308, 412
PscI	ACATGT	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	399
PspN4I	GGNNCC	1 cut(s)	398
PspPI	GGNCC	1 cut(s)	227
PstNI	CAGNNNCTG	1 cut(s)	296
PsyI	GACNNNGTC	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	97
SalI	GTCGAC	1 cut(s)	32
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	3 cut(s)	29, 308, 413
ScrFI	CCNGG	1 cut(s)	401
SetI	ASST	4 cut(s)	45, 144, 458, 464
SfcI	CTRYAG	2 cut(s)	270, 457
SinI	GGWCC	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	97
Sse9I	AATT	2 cut(s)	231, 322
SsiI	CCGC	2 cut(s)	78, 310
SspMI	CTAG	2 cut(s)	5, 369
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	292
TaqI	TCGA	2 cut(s)	33, 131
TasI	AATT	2 cut(s)	231, 322
TseFI	GTSAC	1 cut(s)	451
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	2 cut(s)	35, 434
TspGWI	ACGGA	1 cut(s)	317
Tth111I	GACNNNGTC	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	1 cut(s)	322
XceI	RCATGY	1 cut(s)	118
XmiI	GTMKAC	2 cut(s)	33, 103
XspI	CTAG	2 cut(s)	5, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.