Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004557

Physical Location & Seq

Genomic Coordinates Reverse (-)

64372584 .. 64372898

Gene Structure 315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG430500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGATCGCCTGGAGCGCATGACGTCCTCCTCAACGATATCCAAGGGAAGGACGACGGCTGGGTCGACCCGGAGGGCGATCTGCCAGGTCAGCAGGGAGGGGAAGAGAGAGGAAGCTGAGGAAGGCTTCCGGCGACTCCAAAGGAGGAGGGAAGGTGAACAGGTCGGGCAGATCGGCGGCGACCTTCCTCTTGGTTCTCTTGGTAGCCTCGTTTACAACCATGGTAGATCTGAGCTTTGTCGAAAAAACCATGGTAGATCTCAGAGTCCAGCTTCTGCAAATCATGAAGCGAAGGTCGGTTGTCAAGGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.38

Weight (kDa)

10.17

Isoelectric Point (pI)

65.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004557)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027547
rosa_multiflora	Rmu_sc0002209.1_g000021
rosa_roxburghii	Rroxscaffold_1G00010960
rosa_samantha	Rh1BG400500 Rh1CG414900 Rh1DG430500 Rh2AG545000 Rh2BG114400 Rh2BG227500 Rh2BG319200 Rh2BG435500 Rh2BG517400 Rh2DG416300 Rh2DG529200 Rh2DG567300 Rh3AG319500 Rh4AG015800 Rh4BG264500 Rh5AG067300 Rh5AG083300 Rh5AG213200 Rh5AG296200 Rh5AG296600 Rh5CG075100 Rh5DG116300 Rh6CG098400 Rh6DG091800 Rh6DG376500 Rh7AG428900 Rh7CG242900 Rh7CG447800 Rh7DG200000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	61
AatII	GACGTC	1 cut(s)	26
AccI	GTMKAC	1 cut(s)	65
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	1 cut(s)	12
AcyI	GRCGYC	1 cut(s)	23
AfiI	CCNNNNNNNGG	1 cut(s)	48
AjnI	CCWGG	2 cut(s)	9, 84
AluBI	AGCT	3 cut(s)	116, 235, 272
AluI	AGCT	3 cut(s)	116, 235, 272
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	18
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	167
BbvCI	CCTCAGC	1 cut(s)	117
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	2 cut(s)	11, 86
BcnI	CCSGG	1 cut(s)	70
BglII	AGATCT	2 cut(s)	227, 257
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	3 cut(s)	11, 70, 86
BmrFI	CCNGG	3 cut(s)	11, 70, 86
BpmI	CTGGAG	1 cut(s)	32
Bpu10I	CCTNAGC	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	70
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	3 cut(s)	42, 220, 250
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
BseBI	CCWGG	2 cut(s)	11, 86
BseDI	CCNNGG	3 cut(s)	42, 220, 250
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMII	CTCAG	3 cut(s)	108, 222, 275
BseRI	GAGGAG	2 cut(s)	19, 160
BseYI	CCCAGC	1 cut(s)	59
BsiSI	CCGG	2 cut(s)	70, 130
BslI	CCNNNNNNNGG	1 cut(s)	48
Bsp143I	GATC	5 cut(s)	4, 78, 171, 227, 257
Bsp19I	CCATGG	2 cut(s)	220, 250
BspACI	CCGC	1 cut(s)	177
BspCNI	CTCAG	3 cut(s)	109, 223, 274
BspHI	TCATGA	2 cut(s)	283, 311
BspPI	GGATC	1 cut(s)	12
BssECI	CCNNGG	3 cut(s)	42, 220, 250
BssMI	GATC	5 cut(s)	4, 78, 171, 227, 257
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	3 cut(s)	42, 220, 250
Bst2UI	CCWGG	2 cut(s)	11, 86
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	1 cut(s)	23
BstDEI	CTNAG	3 cut(s)	117, 231, 261
BstDSI	CCRYGG	2 cut(s)	220, 250
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	5 cut(s)	7, 81, 174, 230, 260
BstMBI	GATC	5 cut(s)	4, 78, 171, 227, 257
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 90
BstNI	CCWGG	2 cut(s)	11, 86
BstSCI	CCNGG	3 cut(s)	9, 68, 84
BstX2I	RGATCY	2 cut(s)	227, 257
BstYI	RGATCY	2 cut(s)	227, 257
BtgI	CCRYGG	2 cut(s)	220, 250
CaiI	CAGNNNCTG	1 cut(s)	275
CciI	TCATGA	2 cut(s)	283, 311
CfoI	GCGC	1 cut(s)	18
CviAII	CATG	5 cut(s)	19, 221, 251, 284, 312
CviJI	RGCY	6 cut(s)	59, 116, 126, 207, 235, 272
CviKI_1	RGCY	6 cut(s)	59, 116, 126, 207, 235, 272
DdeI	CTNAG	3 cut(s)	117, 231, 261
DpnI	GATC	5 cut(s)	6, 80, 173, 229, 259
DpnII	GATC	5 cut(s)	4, 78, 171, 227, 257
DrdI	GACNNNNNNGTC	1 cut(s)	61
DseDI	GACNNNNNNGTC	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco130I	CCWWGG	3 cut(s)	42, 220, 250
Eco32I	GATATC	1 cut(s)	39
EcoRII	CCWGG	2 cut(s)	9, 84
EcoRV	GATATC	1 cut(s)	39
EcoT14I	CCWWGG	3 cut(s)	42, 220, 250
ErhI	CCWWGG	3 cut(s)	42, 220, 250
FaeI	CATG	5 cut(s)	22, 224, 254, 287, 315
FaiI	YATR	5 cut(s)	20, 222, 252, 285, 313
FatI	CATG	5 cut(s)	18, 220, 250, 283, 311
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	1 cut(s)	178
Fsp4HI	GCNGC	1 cut(s)	178
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	1 cut(s)	178
GsaI	CCCAGC	1 cut(s)	63
GsuI	CTGGAG	1 cut(s)	32
HapII	CCGG	2 cut(s)	70, 130
HhaI	GCGC	1 cut(s)	18
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	5 cut(s)	22, 224, 254, 287, 315
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	2 cut(s)	135, 265
HpaII	CCGG	2 cut(s)	70, 130
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	3 cut(s)	66, 158, 214
Hpy188I	TCNGA	2 cut(s)	232, 264
Hpy188III	TCNNGA	2 cut(s)	284, 312
Hpy8I	GTNNAC	3 cut(s)	66, 158, 214
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	5 cut(s)	42, 116, 146, 194, 286
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 90
HpyF3I	CTNAG	3 cut(s)	117, 231, 261
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	5 cut(s)	22, 224, 254, 287, 315
HspAI	GCGC	1 cut(s)	16
Kzo9I	GATC	5 cut(s)	4, 78, 171, 227, 257
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	9 cut(s)	23, 45, 71, 79, 83, 98, 143, 146, 282
MaeII	ACGT	1 cut(s)	23
MalI	GATC	5 cut(s)	6, 80, 173, 229, 259
MboI	GATC	5 cut(s)	4, 78, 171, 227, 257
MboII	GAAGA	1 cut(s)	115
MflI	RGATCY	2 cut(s)	227, 257
MlyI	GAGTC	2 cut(s)	129, 274
MspI	CCGG	2 cut(s)	70, 130
MspR9I	CCNGG	3 cut(s)	11, 70, 86
MvaI	CCWGG	2 cut(s)	11, 86
MwoI	GCNNNNNNNGC	2 cut(s)	15, 90
NciI	CCSGG	1 cut(s)	70
NcoI	CCATGG	2 cut(s)	220, 250
NdeII	GATC	5 cut(s)	4, 78, 171, 227, 257
NlaIII	CATG	5 cut(s)	22, 224, 254, 287, 315
PagI	TCATGA	2 cut(s)	283, 311
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	179
PleI	GAGTC	2 cut(s)	129, 273
PpsI	GAGTC	2 cut(s)	129, 273
Psp6I	CCWGG	2 cut(s)	9, 84
PspFI	CCCAGC	1 cut(s)	59
PspGI	CCWGG	2 cut(s)	9, 84
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	2 cut(s)	227, 257
SalI	GTCGAC	1 cut(s)	64
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	5 cut(s)	4, 78, 171, 227, 257
SchI	GAGTC	2 cut(s)	129, 274
ScrFI	CCNGG	3 cut(s)	11, 70, 86
SsiI	CCGC	1 cut(s)	177
StyD4I	CCNGG	3 cut(s)	9, 68, 84
StyI	CCWWGG	3 cut(s)	42, 220, 250
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	2 cut(s)	65, 241
TauI	GCSGC	1 cut(s)	180
TspDTI	ATGAA	2 cut(s)	300, 300
XmiI	GTMKAC	1 cut(s)	65
ZraI	GACGTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.