Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004557

Physical Location & Seq

Genomic Coordinates Forward (+)

9667624 .. 9668043

Gene Structure 420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG114400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGATCGCTTGGAGCGCATGACATCCTCCTCGACAATATGCAAGGAAAGGACGACAGTGGGTTCGACCCGGAGGGCGATCTGCCAGGTCAGCAGGGAGGGGAAGAGCGAGGAAGCCGAGGAAGGCTTCAGGCGACTCCGGAGGAGGAGGGAAGGTGAACAGGTTGGGCAGATCAGCAACGACCTTCCTCTTCACAATCTGCAGAAGCTAGCGGAAGCCGAGGAAGGCTTTCGGCGACTTCGGAGGAGGAGGGAAGGTGAACAGGTCGGGCAGATTGGCGGCGACCTTCCTCCTGGCTCTGTTGGTAGCCTCGTTCACAACCATGGTAGATCTGAGCTTTGTCGAAAAAACCATGGTAGATCTGAGAGCCTAGCTTCTGCAGATCATGAAGCGAAGGTCGGTGCTTCTGGGGTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.47

Weight (kDa)

9.63

Isoelectric Point (pI)

74.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004557)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027547
rosa_multiflora	Rmu_sc0002209.1_g000021
rosa_roxburghii	Rroxscaffold_1G00010960
rosa_samantha	Rh1BG400500 Rh1CG414900 Rh1DG430500 Rh2AG545000 Rh2BG114400 Rh2BG227500 Rh2BG319200 Rh2BG435500 Rh2BG517400 Rh2DG416300 Rh2DG529200 Rh2DG567300 Rh3AG319500 Rh4AG015800 Rh4BG264500 Rh5AG067300 Rh5AG083300 Rh5AG213200 Rh5AG296200 Rh5AG296600 Rh5CG075100 Rh5DG116300 Rh6CG098400 Rh6DG091800 Rh6DG376500 Rh7AG428900 Rh7CG242900 Rh7CG447800 Rh7DG200000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	138
AciI	CCGC	2 cut(s)	212, 279
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	112
AjnI	CCWGG	2 cut(s)	84, 292
AluBI	AGCT	3 cut(s)	208, 337, 374
AluI	AGCT	3 cut(s)	208, 337, 374
AlwI	GGATC	1 cut(s)	12
Aor13HI	TCCGGA	1 cut(s)	138
ArsI	GACNNNNNNTTYG	2 cut(s)	46, 78
Asp700I	GAANNNNTTC	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	18
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	2 cut(s)	167, 269
AsuNHI	GCTAGC	1 cut(s)	208
BciT130I	CCWGG	2 cut(s)	86, 294
BcnI	CCSGG	1 cut(s)	70
BfaI	CTAG	2 cut(s)	209, 371
BfmI	CTRYAG	2 cut(s)	200, 378
BglII	AGATCT	2 cut(s)	329, 359
BisI	GCNGC	1 cut(s)	280
BlsI	GCNGC	1 cut(s)	281
Bme1390I	CCNGG	3 cut(s)	70, 86, 294
BmrFI	CCNGG	3 cut(s)	70, 86, 294
BmtI	GCTAGC	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	70
BsaJI	CCNNGG	4 cut(s)	117, 219, 322, 352
BsaWI	WCCGGW	1 cut(s)	138
BsaXI	ACNNNNNCTCC	4 cut(s)	139, 169, 241, 271
BseAI	TCCGGA	1 cut(s)	138
BseBI	CCWGG	2 cut(s)	86, 294
BseDI	CCNNGG	4 cut(s)	117, 219, 322, 352
BseGI	GGATG	1 cut(s)	23
BseMII	CTCAG	2 cut(s)	324, 354
BseRI	GAGGAG	5 cut(s)	19, 157, 160, 259, 262
BsiSI	CCGG	2 cut(s)	70, 139
Bsp13I	TCCGGA	1 cut(s)	138
Bsp143I	GATC	6 cut(s)	4, 78, 171, 329, 359, 382
Bsp19I	CCATGG	2 cut(s)	322, 352
BspACI	CCGC	2 cut(s)	212, 279
BspCNI	CTCAG	2 cut(s)	325, 355
BspEI	TCCGGA	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	385
BspMAI	CTGCAG	2 cut(s)	204, 382
BspOI	GCTAGC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	98
BssECI	CCNNGG	4 cut(s)	117, 219, 322, 352
BssMI	GATC	6 cut(s)	4, 78, 171, 329, 359, 382
BssT1I	CCWWGG	2 cut(s)	322, 352
Bst2UI	CCWGG	2 cut(s)	86, 294
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	2 cut(s)	98, 195
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	2 cut(s)	333, 363
BstDSI	CCRYGG	2 cut(s)	322, 352
BstF5I	GGATG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	6 cut(s)	7, 81, 174, 332, 362, 385
BstMBI	GATC	6 cut(s)	4, 78, 171, 329, 359, 382
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 90
BstNI	CCWGG	2 cut(s)	86, 294
BstSCI	CCNGG	3 cut(s)	68, 84, 292
BstSFI	CTRYAG	2 cut(s)	200, 378
BstX2I	RGATCY	2 cut(s)	329, 359
BstYI	RGATCY	2 cut(s)	329, 359
BtgI	CCRYGG	2 cut(s)	322, 352
BtsCI	GGATG	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	210
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	1 cut(s)	18
CviAII	CATG	4 cut(s)	19, 323, 353, 386
DdeI	CTNAG	2 cut(s)	333, 363
DpnI	GATC	6 cut(s)	6, 80, 173, 331, 361, 384
DpnII	GATC	6 cut(s)	4, 78, 171, 329, 359, 382
Eam1104I	CTCTTC	2 cut(s)	98, 195
EarI	CTCTTC	2 cut(s)	98, 195
Eco130I	CCWWGG	2 cut(s)	322, 352
Eco57I	CTGAAG	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	84, 292
EcoT14I	CCWWGG	2 cut(s)	322, 352
ErhI	CCWWGG	2 cut(s)	322, 352
FaeI	CATG	4 cut(s)	22, 326, 356, 389
FaiI	YATR	5 cut(s)	20, 40, 324, 354, 387
FatI	CATG	4 cut(s)	18, 322, 352, 385
Fnu4HI	GCNGC	1 cut(s)	280
FokI	GGATG	1 cut(s)	10
Fsp4HI	GCNGC	1 cut(s)	280
FspBI	CTAG	2 cut(s)	209, 371
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	1 cut(s)	280
HapII	CCGG	2 cut(s)	70, 139
HhaI	GCGC	1 cut(s)	18
Hin1II	CATG	4 cut(s)	22, 326, 356, 389
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HinfI	GANTC	1 cut(s)	135
HpaII	CCGG	2 cut(s)	70, 139
HphI	GGTGA	2 cut(s)	167, 269
Hpy166II	GTNNAC	3 cut(s)	158, 260, 316
Hpy188I	TCNGA	3 cut(s)	243, 334, 364
Hpy188III	TCNNGA	2 cut(s)	139, 386
Hpy8I	GTNNAC	3 cut(s)	158, 260, 316
HpyAV	CCTTC	7 cut(s)	116, 146, 194, 218, 248, 296, 388
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	3 cut(s)	42, 202, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 90
HpyF3I	CTNAG	2 cut(s)	333, 363
Hsp92II	CATG	4 cut(s)	22, 326, 356, 389
HspAI	GCGC	1 cut(s)	16
Kpn2I	TCCGGA	1 cut(s)	138
Kzo9I	GATC	6 cut(s)	4, 78, 171, 329, 359, 382
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	13
MaeI	CTAG	2 cut(s)	209, 371
MalI	GATC	6 cut(s)	6, 80, 173, 331, 361, 384
MboI	GATC	6 cut(s)	4, 78, 171, 329, 359, 382
MboII	GAAGA	2 cut(s)	115, 182
MflI	RGATCY	2 cut(s)	329, 359
MluCI	AATT	1 cut(s)	415
MlyI	GAGTC	1 cut(s)	129
MroI	TCCGGA	1 cut(s)	138
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	2 cut(s)	414, 418
MslI	CAYNNNNRTG	1 cut(s)	321
MspI	CCGG	2 cut(s)	70, 139
MspR9I	CCNGG	3 cut(s)	70, 86, 294
MvaI	CCWGG	2 cut(s)	86, 294
MwoI	GCNNNNNNNGC	2 cut(s)	15, 90
NciI	CCSGG	1 cut(s)	70
NcoI	CCATGG	2 cut(s)	322, 352
NdeII	GATC	6 cut(s)	4, 78, 171, 329, 359, 382
NheI	GCTAGC	1 cut(s)	208
NlaIII	CATG	4 cut(s)	22, 326, 356, 389
NmeAIII	GCCGAG	2 cut(s)	142, 244
PacI	TTAATTAA	1 cut(s)	418
PagI	TCATGA	1 cut(s)	385
PciSI	GCTCTTC	1 cut(s)	98
PdmI	GAANNNNTTC	1 cut(s)	228
PkrI	GCNGC	1 cut(s)	281
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
Psp6I	CCWGG	2 cut(s)	84, 292
PspGI	CCWGG	2 cut(s)	84, 292
PstI	CTGCAG	2 cut(s)	204, 382
PsuI	RGATCY	2 cut(s)	329, 359
RseI	CAYNNNNRTG	1 cut(s)	321
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	414, 418
SatI	GCNGC	1 cut(s)	280
Sau3AI	GATC	6 cut(s)	4, 78, 171, 329, 359, 382
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	3 cut(s)	70, 86, 294
SfcI	CTRYAG	2 cut(s)	200, 378
SmiMI	CAYNNNNRTG	1 cut(s)	321
Sse9I	AATT	1 cut(s)	415
SsiI	CCGC	2 cut(s)	212, 279
SspMI	CTAG	2 cut(s)	209, 371
StyD4I	CCNGG	3 cut(s)	68, 84, 292
StyI	CCWWGG	2 cut(s)	322, 352
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	3 cut(s)	32, 65, 343
TasI	AATT	1 cut(s)	415
TauI	GCSGC	1 cut(s)	282
Tru1I	TTAA	2 cut(s)	414, 418
Tru9I	TTAA	2 cut(s)	414, 418
TscAI	CASTG	1 cut(s)	63
TspDTI	ATGAA	1 cut(s)	402
TspRI	CASTG	1 cut(s)	63
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	2 cut(s)	209, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.