Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004557

Physical Location & Seq

Genomic Coordinates Reverse (-)

75517050 .. 75517367

Gene Structure 318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG529200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGATCGCCTGGAGCGCATGACGTCCTCCTCGACGATATCCAAGGGAAGGACGACGGCGGGGCCGACCTGGAGGGCGATCTGCCAGGTCAGCAGGGAGGGGAAGAGCGAGGAAGCCGTCCTCGGCTTCTGGCGACTCCGGAGGGGGAGGGAAGGTGAACAGGCCGGGCAGATCGGCGGCGACCTTCCTCCTGGCTCTCTTGGTAGCCTCGTTCACAACCATGGTAGATCTGAGCTTTGTCGAAAAAACCATGGTAGATCTAAGAGCTTAGCTTCTGCAGATTGTGAAGCAAAGGTCGGTGCTTCTAGGGTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

11.33

Weight (kDa)

10.18

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004557)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027547
rosa_multiflora	Rmu_sc0002209.1_g000021
rosa_roxburghii	Rroxscaffold_1G00010960
rosa_samantha	Rh1BG400500 Rh1CG414900 Rh1DG430500 Rh2AG545000 Rh2BG114400 Rh2BG227500 Rh2BG319200 Rh2BG435500 Rh2BG517400 Rh2DG416300 Rh2DG529200 Rh2DG567300 Rh3AG319500 Rh4AG015800 Rh4BG264500 Rh5AG067300 Rh5AG083300 Rh5AG213200 Rh5AG296200 Rh5AG296600 Rh5CG075100 Rh5DG116300 Rh6CG098400 Rh6DG091800 Rh6DG376500 Rh7AG428900 Rh7CG242900 Rh7CG447800 Rh7DG200000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	26
AccIII	TCCGGA	1 cut(s)	138
AciI	CCGC	2 cut(s)	59, 177
AclWI	GGATC	1 cut(s)	12
AcyI	GRCGYC	1 cut(s)	23
AfiI	CCNNNNNNNGG	1 cut(s)	48
AjnI	CCWGG	4 cut(s)	9, 68, 84, 190
AluBI	AGCT	3 cut(s)	235, 267, 272
AluI	AGCT	3 cut(s)	235, 267, 272
AlwI	GGATC	1 cut(s)	12
Aor13HI	TCCGGA	1 cut(s)	138
AoxI	GGCC	2 cut(s)	62, 162
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	1 cut(s)	62
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	167
BceAI	ACGGC	2 cut(s)	72, 101
BciT130I	CCWGG	4 cut(s)	11, 70, 86, 192
BcnI	CCSGG	1 cut(s)	166
BfaI	CTAG	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	276
BglII	AGATCT	2 cut(s)	227, 257
BisI	GCNGC	1 cut(s)	178
BlpI	GCTNAGC	1 cut(s)	268
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	5 cut(s)	11, 70, 86, 166, 192
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	63
BmrFI	CCNGG	5 cut(s)	11, 70, 86, 166, 192
BpmI	CTGGAG	2 cut(s)	32, 91
Bpu1102I	GCTNAGC	1 cut(s)	268
BpuMI	CCSGG	1 cut(s)	166
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	4 cut(s)	42, 121, 220, 250
BsaWI	WCCGGW	1 cut(s)	138
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
BseAI	TCCGGA	1 cut(s)	138
BseBI	CCWGG	4 cut(s)	11, 70, 86, 192
BseDI	CCNNGG	4 cut(s)	42, 121, 220, 250
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	19
BshFI	GGCC	2 cut(s)	64, 164
BsiSI	CCGG	2 cut(s)	139, 165
BslI	CCNNNNNNNGG	1 cut(s)	48
BsnI	GGCC	2 cut(s)	64, 164
Bsp13I	TCCGGA	1 cut(s)	138
Bsp143I	GATC	5 cut(s)	4, 78, 171, 227, 257
Bsp1720I	GCTNAGC	1 cut(s)	268
Bsp19I	CCATGG	2 cut(s)	220, 250
BspACI	CCGC	2 cut(s)	59, 177
BspANI	GGCC	2 cut(s)	64, 164
BspCNI	CTCAG	1 cut(s)	223
BspEI	TCCGGA	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	63
BspMAI	CTGCAG	1 cut(s)	280
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	98
BssECI	CCNNGG	4 cut(s)	42, 121, 220, 250
BssMI	GATC	5 cut(s)	4, 78, 171, 227, 257
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	3 cut(s)	42, 220, 250
Bst2UI	CCWGG	4 cut(s)	11, 70, 86, 192
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	1 cut(s)	23
BstDEI	CTNAG	3 cut(s)	231, 261, 268
BstDSI	CCRYGG	2 cut(s)	220, 250
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	5 cut(s)	7, 81, 174, 230, 260
BstMBI	GATC	5 cut(s)	4, 78, 171, 227, 257
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 90
BstNI	CCWGG	4 cut(s)	11, 70, 86, 192
BstSCI	CCNGG	5 cut(s)	9, 68, 84, 164, 190
BstSFI	CTRYAG	1 cut(s)	276
BstX2I	RGATCY	2 cut(s)	227, 257
BstYI	RGATCY	2 cut(s)	227, 257
BsuRI	GGCC	2 cut(s)	64, 164
BtgI	CCRYGG	2 cut(s)	220, 250
CfoI	GCGC	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	62
CviAII	CATG	3 cut(s)	19, 221, 251
CviJI	RGCY	9 cut(s)	64, 116, 126, 164, 195, 207, 235, 267, 272
CviKI_1	RGCY	9 cut(s)	64, 116, 126, 164, 195, 207, 235, 267, 272
DdeI	CTNAG	3 cut(s)	231, 261, 268
DpnI	GATC	5 cut(s)	6, 80, 173, 229, 259
DpnII	GATC	5 cut(s)	4, 78, 171, 227, 257
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco130I	CCWWGG	3 cut(s)	42, 220, 250
Eco32I	GATATC	1 cut(s)	39
EcoRII	CCWGG	4 cut(s)	9, 68, 84, 190
EcoRV	GATATC	1 cut(s)	39
EcoT14I	CCWWGG	3 cut(s)	42, 220, 250
ErhI	CCWWGG	3 cut(s)	42, 220, 250
FaeI	CATG	3 cut(s)	22, 224, 254
FaiI	YATR	3 cut(s)	20, 222, 252
FatI	CATG	3 cut(s)	18, 220, 250
FauI	CCCGC	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	178
Fsp4HI	GCNGC	1 cut(s)	178
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	1 cut(s)	178
GsuI	CTGGAG	2 cut(s)	32, 91
HaeIII	GGCC	2 cut(s)	64, 164
HapII	CCGG	2 cut(s)	139, 165
HhaI	GCGC	1 cut(s)	18
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	3 cut(s)	22, 224, 254
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HinfI	GANTC	1 cut(s)	135
HpaII	CCGG	2 cut(s)	139, 165
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	2 cut(s)	158, 214
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	2 cut(s)	158, 214
Hpy99I	CGWCG	2 cut(s)	37, 58
HpyAV	CCTTC	3 cut(s)	42, 146, 194
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 90
HpyF3I	CTNAG	3 cut(s)	231, 261, 268
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	22, 224, 254
HspAI	GCGC	1 cut(s)	16
Kpn2I	TCCGGA	1 cut(s)	138
Kzo9I	GATC	5 cut(s)	4, 78, 171, 227, 257
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	1 cut(s)	23
MalI	GATC	5 cut(s)	6, 80, 173, 229, 259
MboI	GATC	5 cut(s)	4, 78, 171, 227, 257
MboII	GAAGA	1 cut(s)	115
MflI	RGATCY	2 cut(s)	227, 257
MluCI	AATT	1 cut(s)	313
MlyI	GAGTC	1 cut(s)	129
MroI	TCCGGA	1 cut(s)	138
MseI	TTAA	2 cut(s)	312, 316
MslI	CAYNNNNRTG	1 cut(s)	219
MspI	CCGG	2 cut(s)	139, 165
MspR9I	CCNGG	5 cut(s)	11, 70, 86, 166, 192
MvaI	CCWGG	4 cut(s)	11, 70, 86, 192
MwoI	GCNNNNNNNGC	2 cut(s)	15, 90
NciI	CCSGG	1 cut(s)	166
NcoI	CCATGG	2 cut(s)	220, 250
NdeII	GATC	5 cut(s)	4, 78, 171, 227, 257
NlaIII	CATG	3 cut(s)	22, 224, 254
NlaIV	GGNNCC	1 cut(s)	63
NmeAIII	GCCGAG	1 cut(s)	102
PacI	TTAATTAA	1 cut(s)	316
PciSI	GCTCTTC	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	2 cut(s)	29, 62
PkrI	GCNGC	1 cut(s)	179
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
Psp6I	CCWGG	4 cut(s)	9, 68, 84, 190
PspGI	CCWGG	4 cut(s)	9, 68, 84, 190
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	62
PstI	CTGCAG	1 cut(s)	280
PsuI	RGATCY	2 cut(s)	227, 257
RseI	CAYNNNNRTG	1 cut(s)	219
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	312, 316
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	5 cut(s)	4, 78, 171, 227, 257
Sau96I	GGNCC	1 cut(s)	62
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	5 cut(s)	11, 70, 86, 166, 192
SetI	ASST	9 cut(s)	26, 71, 90, 157, 186, 237, 269, 274, 297
SfcI	CTRYAG	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	219
Sse9I	AATT	1 cut(s)	313
SsiI	CCGC	2 cut(s)	59, 177
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	5 cut(s)	9, 68, 84, 164, 190
StyI	CCWWGG	3 cut(s)	42, 220, 250
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	2 cut(s)	32, 241
TasI	AATT	1 cut(s)	313
TauI	GCSGC	1 cut(s)	180
Tru1I	TTAA	2 cut(s)	312, 316
Tru9I	TTAA	2 cut(s)	312, 316
XspI	CTAG	1 cut(s)	306
ZraI	GACGTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.