Rh7DG200000

Belongs to the syntaxin family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Forward (+)
18889754 .. 18890679
926 bp
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UTR
Exon/CDS
Intron
Rh7DG200000.1

Sequence Viewer

Length: 258 bp
ATGTCATATCTGGATAAAGAGGAGATTGCTTCAAAAGAAAAAAGTATGGCATCTGCAGGTGCTCTGACTGCCAAGATTCGCCGGACCAAGGCTCCATTGCTTGAAGAGGTTCCCAAGTTGCATAGATTGGCTGTAAAGAAGGTTGGCCTCCACTTCCTCTGCATATATGCTAGAACTTGTTTAGCGCTGGAAGGTGATTTTGGATGGGTATTGATTGGACAAAAGATGATTGCTTTTGAAGAGAATTCTTGGCAGTGA

Protein Analysis

85

Amino Acids

9.58

Weight (kDa)

9.0

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 47
Acc36I ACCTGC 1 cut(s) 47
AcsI RAATTY 1 cut(s) 244
AfeI AGCGCT 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 3 cut(s) 33, 104, 239
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
Alw21I GWGCWC 1 cut(s) 64
Aor51HI AGCGCT 1 cut(s) 186
AoxI GGCC 1 cut(s) 145
ApoI RAATTY 1 cut(s) 244
Asp700I GAANNNNTTC 1 cut(s) 108
AspLEI GCGC 1 cut(s) 187
AspS9I GGNCC 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 206
AvaII GGWCC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 64
BccI CCATC 1 cut(s) 198
BfaI CTAG 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 54
BfoI RGCGCY 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 84
BmiI GGNNCC 2 cut(s) 93, 111
BmsI GCATC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 87
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 1 cut(s) 209
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMI GCAATG 1 cut(s) 95
BseRI GAGGAG 1 cut(s) 35
BshFI GGCC 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 64
BsiSI CCGG 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 88
BsnI GGCC 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 64
BspANI GGCC 1 cut(s) 147
BspLI GGNNCC 2 cut(s) 93, 111
BspMAI CTGCAG 1 cut(s) 58
BspMI ACCTGC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 87
Bst6I CTCTTC 2 cut(s) 99, 234
BstF5I GGATG 1 cut(s) 209
BstH2I RGCGCY 1 cut(s) 188
BstHHI GCGC 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 54
BsuRI GGCC 1 cut(s) 147
BtsCI GGATG 1 cut(s) 209
BveI ACCTGC 1 cut(s) 47
CfoI GCGC 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 84
CviJI RGCY 3 cut(s) 92, 131, 147
CviKI_1 RGCY 3 cut(s) 92, 131, 147
Eam1104I CTCTTC 2 cut(s) 99, 234
EarI CTCTTC 2 cut(s) 99, 234
Eco130I CCWWGG 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 84
Eco47III AGCGCT 1 cut(s) 186
EcoRI GAATTC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaiI YATR 6 cut(s) 7, 47, 123, 164, 166, 168
FokI GGATG 1 cut(s) 216
FspBI CTAG 1 cut(s) 171
GlaI GCGC 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 188
HaeIII GGCC 1 cut(s) 147
HapII CCGG 1 cut(s) 82
HhaI GCGC 1 cut(s) 187
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HinfI GANTC 1 cut(s) 76
HpaII CCGG 1 cut(s) 82
HphI GGTGA 1 cut(s) 206
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 1 cut(s) 11
HpyAV CCTTC 2 cut(s) 133, 185
HpyCH4V TGCA 3 cut(s) 56, 121, 162
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HspAI GCGC 1 cut(s) 185
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 3 cut(s) 42, 95, 173
LweI GCATC 1 cut(s) 59
MaeI CTAG 1 cut(s) 171
MboII GAAGA 2 cut(s) 116, 251
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 1 cut(s) 244
MnlI CCTC 4 cut(s) 13, 100, 158, 167
MroXI GAANNNNTTC 1 cut(s) 108
MspI CCGG 1 cut(s) 82
MwoI GCNNNNNNNGC 1 cut(s) 68
NlaIV GGNNCC 2 cut(s) 93, 111
PaqCI CACCTGC 1 cut(s) 47
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 1 cut(s) 76
PspN4I GGNNCC 2 cut(s) 93, 111
PspPI GGNCC 1 cut(s) 84
PstI CTGCAG 1 cut(s) 58
Sau96I GGNCC 1 cut(s) 84
SduI GDGCHC 1 cut(s) 64
SetI ASST 4 cut(s) 61, 111, 144, 196
SfaNI GCATC 1 cut(s) 59
SfcI CTRYAG 1 cut(s) 54
SinI GGWCC 1 cut(s) 84
Sse9I AATT 1 cut(s) 244
SspMI CTAG 1 cut(s) 171
StyI CCWWGG 1 cut(s) 87
TasI AATT 1 cut(s) 244
TfiI GAWTC 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 1 cut(s) 244
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.