Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0004557

Physical Location & Seq

Genomic Coordinates Reverse (-)

44247771 .. 44252955

Gene Structure 5185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG319500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCTTGGAGAAGCTCTGGGAGAGAATCTTAATATCTACTTCCTTCCTCGTGATCTTTCTTCTCTTTGCTCTCTGTTAATCTCACTGCATTATCTTCTATACTTTCCTCAGAAAGACTCTAACGTTTCCGGTGCCGATGCCTTCGCTCGCCTCTACTCCGCCATTGAGTCCGACATTGAAGCTGCTCTTCAGAAAGTGGAGCTTGCTTCAAAAGAAAAAAGTATGGCATTTGCAGGTGCTCTGACTGCCAAGATTCGTCGGACCAAGGCTCCATTGCTTGAAGAGGTTCCCAAGTTGCAGAGATTGGATGTAAAGAAGAGAGAAGGTGTAGAGAGGACATCATGGGTTGCAGCACGCATTCTCGAATCTTCTCCAGAAACCAAAATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005215 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0008565 GO:0009506 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0090150 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

130

Amino Acids

14.49

Weight (kDa)

6.61

Isoelectric Point (pI)

55.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004557)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027547
rosa_multiflora	Rmu_sc0002209.1_g000021
rosa_roxburghii	Rroxscaffold_1G00010960
rosa_samantha	Rh1BG400500 Rh1CG414900 Rh1DG430500 Rh2AG545000 Rh2BG114400 Rh2BG227500 Rh2BG319200 Rh2BG435500 Rh2BG517400 Rh2DG416300 Rh2DG529200 Rh2DG567300 Rh3AG319500 Rh4AG015800 Rh4BG264500 Rh5AG067300 Rh5AG083300 Rh5AG213200 Rh5AG296200 Rh5AG296600 Rh5CG075100 Rh5DG116300 Rh6CG098400 Rh6DG091800 Rh6DG376500 Rh7AG428900 Rh7CG242900 Rh7CG447800 Rh7DG200000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	224
Acc36I	ACCTGC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	131
AciI	CCGC	1 cut(s)	159
AclI	AACGTT	1 cut(s)	123
AcuI	CTGAAG	1 cut(s)	173
AgsI	TTSAA	3 cut(s)	179, 210, 281
AluBI	AGCT	3 cut(s)	14, 182, 202
AluI	AGCT	3 cut(s)	14, 182, 202
Alw21I	GWGCWC	1 cut(s)	241
ApeKI	GCWGC	2 cut(s)	182, 350
Asp700I	GAANNNNTTC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	131
BauI	CACGAG	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	169, 362
BfuAI	ACCTGC	1 cut(s)	224
BisI	GCNGC	2 cut(s)	183, 351
BlsI	GCNGC	2 cut(s)	184, 352
Bme18I	GGWCC	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	261
BmiI	GGNNCC	3 cut(s)	133, 270, 288
BmsI	GCATC	1 cut(s)	127
BpmI	CTGGAG	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bse3DI	GCAATG	1 cut(s)	272
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	313
BseMI	GCAATG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	122
BseXI	GCAGC	2 cut(s)	169, 362
BshNI	GGYRCC	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	129
BsmI	GAATGC	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	1 cut(s)	52
BspACI	CCGC	1 cut(s)	159
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	3 cut(s)	133, 270, 288
BspMI	ACCTGC	1 cut(s)	224
BspQI	GCTCTTC	1 cut(s)	192
BspT107I	GGYRCC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	1 cut(s)	52
BssSI	CACGAG	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	48
Bst6I	CTCTTC	3 cut(s)	192, 276, 311
BstC8I	GCNNGC	3 cut(s)	148, 204, 355
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	313
BstKTI	GATC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	169, 362
BtsCI	GGATG	1 cut(s)	313
BtsI	GCAGTG	1 cut(s)	83
BtsIMutI	CAGTG	1 cut(s)	83
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	3 cut(s)	148, 204, 355
Cfr13I	GGNCC	1 cut(s)	261
CviAII	CATG	1 cut(s)	342
CviJI	RGCY	4 cut(s)	14, 182, 202, 269
CviKI_1	RGCY	4 cut(s)	14, 182, 202, 269
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
Eam1104I	CTCTTC	3 cut(s)	192, 276, 311
EarI	CTCTTC	3 cut(s)	192, 276, 311
EciI	GGCGGA	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	261
Eco57I	CTGAAG	1 cut(s)	173
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	1 cut(s)	345
FaiI	YATR	3 cut(s)	100, 224, 343
FalI	AAGNNNNNCTT	4 cut(s)	171, 203, 186, 218
FatI	CATG	1 cut(s)	341
Fnu4HI	GCNGC	2 cut(s)	183, 351
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	2 cut(s)	183, 351
GluI	GCNGC	2 cut(s)	183, 351
GsuI	CTGGAG	1 cut(s)	357
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	1 cut(s)	345
HinfI	GANTC	5 cut(s)	25, 116, 167, 253, 365
HpaII	CCGG	1 cut(s)	129
Hpy188I	TCNGA	5 cut(s)	111, 172, 192, 243, 261
Hpy188III	TCNNGA	3 cut(s)	50, 362, 374
Hpy99I	CGWCG	1 cut(s)	261
HpyAV	CCTTC	3 cut(s)	53, 151, 317
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	4 cut(s)	88, 233, 298, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	345
Kzo9I	GATC	1 cut(s)	52
LguI	GCTCTTC	1 cut(s)	192
LmnI	GCTCC	2 cut(s)	199, 274
LpnPI	CCDG	4 cut(s)	2, 142, 219, 387
Lsp1109I	GCAGC	2 cut(s)	169, 362
LweI	GCATC	1 cut(s)	127
MaeII	ACGT	1 cut(s)	123
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	6 cut(s)	51, 86, 179, 293, 328, 360
MhlI	GDGCHC	1 cut(s)	241
MlyI	GAGTC	2 cut(s)	110, 176
MmeI	TCCRAC	2 cut(s)	195, 239
MnlI	CCTC	5 cut(s)	57, 117, 161, 277, 327
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	2 cut(s)	30, 77
MspI	CCGG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	357
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	1 cut(s)	345
NlaIV	GGNNCC	3 cut(s)	133, 270, 288
PaqCI	CACCTGC	1 cut(s)	224
PciSI	GCTCTTC	1 cut(s)	192
PctI	GAATGC	1 cut(s)	357
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	3 cut(s)	25, 253, 365
PkrI	GCNGC	2 cut(s)	184, 352
PleI	GAGTC	2 cut(s)	110, 175
PpsI	GAGTC	2 cut(s)	110, 175
Psp1406I	AACGTT	1 cut(s)	123
PspN4I	GGNNCC	3 cut(s)	133, 270, 288
PspPI	GGNCC	1 cut(s)	261
SapI	GCTCTTC	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	30, 77
SatI	GCNGC	2 cut(s)	183, 351
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	1 cut(s)	261
SchI	GAGTC	2 cut(s)	110, 176
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	7 cut(s)	16, 126, 184, 204, 238, 288, 328
SfaNI	GCATC	1 cut(s)	127
SinI	GGWCC	1 cut(s)	261
SsiI	CCGC	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	264
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	363
TfiI	GAWTC	3 cut(s)	25, 253, 365
Tru1I	TTAA	2 cut(s)	30, 77
Tru9I	TTAA	2 cut(s)	30, 77
TscAI	CASTG	1 cut(s)	90
TseI	GCWGC	2 cut(s)	182, 350
TspRI	CASTG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.