Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004557

Physical Location & Seq

Genomic Coordinates Reverse (-)

38077294 .. 38078139

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG319200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCTTGGAGAAGCTCTTTTGAACCAGAGATCGGAGATAAAATTCCTCAAAGAAAAAAGTCACGACTCTAACGTCTCCGGTGCCGATGCATTCGCTCGCCTCTACTCCGCCATCGAGTCCGACATTGAAGCTGCTCTTCAGAAAGCGGAGCTTGCTTCAAAAGAAAAAAGTATGGCATCTGCAGGTGCTCTGACTGCCAAGATTCGCCGGACCAAGGCTCCATTGCTTGAAGAGGTTCCCAAGTTGCAGAGATTCGCTGTAAAGAAGTCATCTGCATATATGCTAGAACTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005215 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0008565 GO:0009506 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0090150 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

98

Amino Acids

10.74

Weight (kDa)

9.26

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004557)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027547
rosa_multiflora	Rmu_sc0002209.1_g000021
rosa_roxburghii	Rroxscaffold_1G00010960
rosa_samantha	Rh1BG400500 Rh1CG414900 Rh1DG430500 Rh2AG545000 Rh2BG114400 Rh2BG227500 Rh2BG319200 Rh2BG435500 Rh2BG517400 Rh2DG416300 Rh2DG529200 Rh2DG567300 Rh3AG319500 Rh4AG015800 Rh4BG264500 Rh5AG067300 Rh5AG083300 Rh5AG213200 Rh5AG296200 Rh5AG296600 Rh5CG075100 Rh5DG116300 Rh6CG098400 Rh6DG091800 Rh6DG376500 Rh7AG428900 Rh7CG242900 Rh7CG447800 Rh7DG200000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	173
AasI	GACNNNNNNGTC	1 cut(s)	71
Acc36I	ACCTGC	1 cut(s)	173
AccB1I	GGYRCC	1 cut(s)	80
AciI	CCGC	2 cut(s)	108, 146
AcsI	RAATTY	1 cut(s)	41
AcuI	CTGAAG	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	31, 214
AgsI	TTSAA	4 cut(s)	22, 128, 159, 230
AluBI	AGCT	3 cut(s)	14, 131, 151
AluI	AGCT	3 cut(s)	14, 131, 151
Alw21I	GWGCWC	1 cut(s)	190
Alw26I	GTCTC	1 cut(s)	79
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	41
Asp700I	GAANNNNTTC	1 cut(s)	234
AspS9I	GGNCC	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	284
BfmI	CTRYAG	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	173
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	3 cut(s)	82, 219, 237
BmsI	GCATC	2 cut(s)	76, 185
BsaJI	CCNNGG	1 cut(s)	213
BsaWI	WCCGGW	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 214
Bse3DI	GCAATG	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	213
BseLI	CCNNNNNNNGG	2 cut(s)	31, 214
BseMI	GCAATG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	118
BshNI	GGYRCC	1 cut(s)	80
BsiHKAI	GWGCWC	1 cut(s)	190
BsiSI	CCGG	2 cut(s)	78, 208
BslI	CCNNNNNNNGG	2 cut(s)	31, 214
BsmAI	GTCTC	1 cut(s)	79
BsmBI	CGTCTC	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	1 cut(s)	29
BspACI	CCGC	2 cut(s)	108, 146
BspLI	GGNNCC	3 cut(s)	82, 219, 237
BspMAI	CTGCAG	1 cut(s)	184
BspMI	ACCTGC	1 cut(s)	173
BspQI	GCTCTTC	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	213
Bst6I	CTCTTC	2 cut(s)	141, 225
BstC8I	GCNNGC	2 cut(s)	97, 153
BstKTI	GATC	1 cut(s)	32
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	29
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 194
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	118
BveI	ACCTGC	1 cut(s)	173
Cac8I	GCNNGC	2 cut(s)	97, 153
Cfr13I	GGNCC	1 cut(s)	210
CviJI	RGCY	4 cut(s)	14, 131, 151, 218
CviKI_1	RGCY	4 cut(s)	14, 131, 151, 218
DpnI	GATC	1 cut(s)	31
DpnII	GATC	1 cut(s)	29
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
Eam1104I	CTCTTC	2 cut(s)	141, 225
EarI	CTCTTC	2 cut(s)	141, 225
EciI	GGCGGA	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	122
EcoT14I	CCWWGG	1 cut(s)	213
EcoT22I	ATGCAT	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	79
FaiI	YATR	4 cut(s)	173, 277, 279, 281
FalI	AAGNNNNNCTT	4 cut(s)	120, 152, 135, 167
Fnu4HI	GCNGC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	1 cut(s)	284
GluI	GCNGC	1 cut(s)	132
HapII	CCGG	2 cut(s)	78, 208
HinfI	GANTC	4 cut(s)	65, 116, 202, 252
HpaII	CCGG	2 cut(s)	78, 208
Hpy188I	TCNGA	4 cut(s)	34, 121, 141, 192
Hpy188III	TCNNGA	1 cut(s)	62
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	4 cut(s)	89, 182, 247, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 194
HpySE526I	ACGT	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	29
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	2 cut(s)	148, 223
LpnPI	CCDG	4 cut(s)	38, 91, 168, 221
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	2 cut(s)	76, 185
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	1 cut(s)	31
MboI	GATC	1 cut(s)	29
MboII	GAAGA	2 cut(s)	128, 242
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	1 cut(s)	41
MlyI	GAGTC	2 cut(s)	59, 125
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	3 cut(s)	56, 110, 226
Mph1103I	ATGCAT	1 cut(s)	91
MroXI	GAANNNNTTC	1 cut(s)	234
MspI	CCGG	2 cut(s)	78, 208
Mva1269I	GAATGC	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	152, 194
NdeII	GATC	1 cut(s)	29
NlaIV	GGNNCC	3 cut(s)	82, 219, 237
NmuCI	GTSAC	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	91
PaqCI	CACCTGC	1 cut(s)	173
PciSI	GCTCTTC	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PctI	GAATGC	1 cut(s)	89
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	202, 252
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	2 cut(s)	59, 124
PpsI	GAGTC	2 cut(s)	59, 124
PspN4I	GGNNCC	3 cut(s)	82, 219, 237
PspPI	GGNCC	1 cut(s)	210
PstI	CTGCAG	1 cut(s)	184
SapI	GCTCTTC	1 cut(s)	141
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	1 cut(s)	29
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	2 cut(s)	59, 125
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	6 cut(s)	16, 75, 133, 153, 187, 237
SfaNI	GCATC	2 cut(s)	76, 185
SfcI	CTRYAG	1 cut(s)	180
SinI	GGWCC	1 cut(s)	210
Sse9I	AATT	1 cut(s)	41
SsiI	CCGC	2 cut(s)	108, 146
SspMI	CTAG	1 cut(s)	284
StyI	CCWWGG	1 cut(s)	213
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	114
TasI	AATT	1 cut(s)	41
TfiI	GAWTC	2 cut(s)	202, 252
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	210
XapI	RAATTY	1 cut(s)	41
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	1 cut(s)	284
Zsp2I	ATGCAT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.