Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004557

Physical Location & Seq

Genomic Coordinates Reverse (-)

7166377 .. 7173419

Gene Structure 7043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG083300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGACGTCCTCCTCGACGATATCCAAGGGAAGGACGACGGCGGGGTCGACCCGGAGGGCGATCTTCCAGGTCAGCAGGGAGGGGAAGAGCGAGGAAGCCGAGGAAGGCTTCTGGCGACTCCGAAGGAGGAAGGAAGGTGAACAGGTCAGGCAGATCGGCGACGACCTTCCTCTTGTCTCTTTTGGTAGCCTTGTTCACAACCATGGTAGATCTGAGAGCCTAGCTTCTGCAGATTGTGAAGCGAAGAAAGACTCTAATGTCTCCGGTGCCGATGCCTTCGCTCGCCTCTACTCCGCCATCGAGTCCGACATTGAAGCTGCTCTTCAGAAAGCGGAACTTGCTTCAAAAGAAAAAAGTATGGCATCTGCAGGTGCTCTGACTACCAAGATTCCCCAGACCAAGGCTCCATTGCTTGAAGAGGTTCCCAAGTTGCAGAGATTGGATGTAAAGAAGGTTGGCCTCCACTGTTTGAATCAATTCTATTTTCGTGCTTCTTCTGCTATATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005215 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0008565 GO:0009506 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0090150 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

169

Amino Acids

18.43

Weight (kDa)

9.03

Isoelectric Point (pI)

52.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004557)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027547
rosa_multiflora	Rmu_sc0002209.1_g000021
rosa_roxburghii	Rroxscaffold_1G00010960
rosa_samantha	Rh1BG400500 Rh1CG414900 Rh1DG430500 Rh2AG545000 Rh2BG114400 Rh2BG227500 Rh2BG319200 Rh2BG435500 Rh2BG517400 Rh2DG416300 Rh2DG529200 Rh2DG567300 Rh3AG319500 Rh4AG015800 Rh4BG264500 Rh5AG067300 Rh5AG083300 Rh5AG213200 Rh5AG296200 Rh5AG296600 Rh5CG075100 Rh5DG116300 Rh6CG098400 Rh6DG091800 Rh6DG376500 Rh7AG428900 Rh7CG242900 Rh7CG447800 Rh7DG200000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	359
AasI	GACNNNNNNGTC	2 cut(s)	43, 257
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	359
AccB1I	GGYRCC	1 cut(s)	266
AccI	GTMKAC	1 cut(s)	47
AciI	CCGC	3 cut(s)	41, 294, 332
AcuI	CTGAAG	1 cut(s)	308
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	30, 400
AgsI	TTSAA	4 cut(s)	314, 345, 416, 472
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	2 cut(s)	224, 317
AluI	AGCT	2 cut(s)	224, 317
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	2 cut(s)	181, 265
AoxI	GGCC	1 cut(s)	457
ApeKI	GCWGC	1 cut(s)	317
Asp700I	GAANNNNTTC	2 cut(s)	420, 476
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	1 cut(s)	305
BceAI	ACGGC	1 cut(s)	54
BciT130I	CCWGG	1 cut(s)	68
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	2 cut(s)	181, 265
BfaI	CTAG	2 cut(s)	221, 508
BfmI	CTRYAG	2 cut(s)	228, 366
BfuAI	ACCTGC	1 cut(s)	359
BglII	AGATCT	1 cut(s)	209
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
Bme1390I	CCNGG	2 cut(s)	52, 68
BmiI	GGNNCC	3 cut(s)	268, 405, 423
BmrFI	CCNGG	2 cut(s)	52, 68
BmsI	GCATC	2 cut(s)	262, 371
BpuMI	CCSGG	1 cut(s)	52
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	4 cut(s)	24, 99, 202, 399
BsaWI	WCCGGW	1 cut(s)	263
BsaXI	ACNNNNNCTCC	2 cut(s)	388, 418
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 400
Bse3DI	GCAATG	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	4 cut(s)	24, 99, 202, 399
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	2 cut(s)	30, 400
BseMI	GCAATG	1 cut(s)	407
BseMII	CTCAG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	304
BshFI	GGCC	1 cut(s)	459
BshNI	GGYRCC	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	376
BsiSI	CCGG	2 cut(s)	52, 264
BslI	CCNNNNNNNGG	2 cut(s)	30, 400
BsmAI	GTCTC	2 cut(s)	181, 265
BsnI	GGCC	1 cut(s)	459
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp143I	GATC	3 cut(s)	60, 153, 209
Bsp19I	CCATGG	1 cut(s)	202
BspACI	CCGC	3 cut(s)	41, 294, 332
BspANI	GGCC	1 cut(s)	459
BspCNI	CTCAG	1 cut(s)	205
BspLI	GGNNCC	3 cut(s)	268, 405, 423
BspMAI	CTGCAG	2 cut(s)	232, 370
BspMI	ACCTGC	1 cut(s)	359
BspQI	GCTCTTC	2 cut(s)	80, 327
BspT107I	GGYRCC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	407
BssECI	CCNNGG	4 cut(s)	24, 99, 202, 399
BssMI	GATC	3 cut(s)	60, 153, 209
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	3 cut(s)	24, 202, 399
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	467
Bst6I	CTCTTC	3 cut(s)	80, 327, 411
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	1 cut(s)	213
BstDSI	CCRYGG	1 cut(s)	202
BstF5I	GGATG	1 cut(s)	448
BstKTI	GATC	3 cut(s)	63, 156, 212
BstMAI	GTCTC	2 cut(s)	181, 265
BstMBI	GATC	3 cut(s)	60, 153, 209
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 497
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	2 cut(s)	50, 66
BstSFI	CTRYAG	2 cut(s)	228, 366
BstV1I	GCAGC	1 cut(s)	304
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	459
BtgI	CCRYGG	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	448
BtsIMutI	CAGTG	1 cut(s)	463
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	283
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	8 cut(s)	98, 108, 189, 219, 224, 317, 404, 459
CviKI_1	RGCY	8 cut(s)	98, 108, 189, 219, 224, 317, 404, 459
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	3 cut(s)	62, 155, 211
DpnII	GATC	3 cut(s)	60, 153, 209
DrdI	GACNNNNNNGTC	2 cut(s)	43, 257
DseDI	GACNNNNNNGTC	2 cut(s)	43, 257
Eam1104I	CTCTTC	3 cut(s)	80, 327, 411
EarI	CTCTTC	3 cut(s)	80, 327, 411
EciI	GGCGGA	1 cut(s)	283
Eco130I	CCWWGG	3 cut(s)	24, 202, 399
Eco32I	GATATC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	66
EcoRV	GATATC	1 cut(s)	21
EcoT14I	CCWWGG	3 cut(s)	24, 202, 399
ErhI	CCWWGG	3 cut(s)	24, 202, 399
FaeI	CATG	1 cut(s)	206
FaiI	YATR	4 cut(s)	204, 359, 503, 505
FalI	AAGNNNNNCTT	4 cut(s)	306, 338, 321, 353
FatI	CATG	1 cut(s)	202
FauI	CCCGC	1 cut(s)	34
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	1 cut(s)	318
FokI	GGATG	1 cut(s)	455
Fsp4HI	GCNGC	1 cut(s)	318
FspBI	CTAG	2 cut(s)	221, 508
GluI	GCNGC	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	459
HapII	CCGG	2 cut(s)	52, 264
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	206
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HinfI	GANTC	5 cut(s)	117, 251, 302, 388, 472
HpaII	CCGG	2 cut(s)	52, 264
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	3 cut(s)	48, 140, 196
Hpy188I	TCNGA	5 cut(s)	122, 214, 307, 327, 378
Hpy8I	GTNNAC	3 cut(s)	48, 140, 196
Hpy99I	CGWCG	3 cut(s)	19, 40, 164
HpyAV	CCTTC	8 cut(s)	24, 98, 117, 124, 128, 176, 286, 445
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	3 cut(s)	230, 368, 433
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 497
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	206
Kzo9I	GATC	3 cut(s)	60, 153, 209
LguI	GCTCTTC	2 cut(s)	80, 327
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	2 cut(s)	262, 371
MaeI	CTAG	2 cut(s)	221, 508
MaeII	ACGT	1 cut(s)	5
MalI	GATC	3 cut(s)	62, 155, 211
MboI	GATC	3 cut(s)	60, 153, 209
MboII	GAAGA	6 cut(s)	55, 97, 256, 314, 428, 486
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	1 cut(s)	476
MlyI	GAGTC	3 cut(s)	111, 245, 311
MmeI	TCCRAC	1 cut(s)	330
MroXI	GAANNNNTTC	2 cut(s)	420, 476
MslI	CAYNNNNRTG	1 cut(s)	201
MspI	CCGG	2 cut(s)	52, 264
MspR9I	CCNGG	2 cut(s)	52, 68
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	2 cut(s)	338, 497
NciI	CCSGG	1 cut(s)	52
NcoI	CCATGG	1 cut(s)	202
NdeII	GATC	3 cut(s)	60, 153, 209
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	3 cut(s)	268, 405, 423
NmeAIII	GCCGAG	1 cut(s)	124
PaqCI	CACCTGC	1 cut(s)	359
PciSI	GCTCTTC	2 cut(s)	80, 327
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 44
PdmI	GAANNNNTTC	2 cut(s)	420, 476
PfeI	GAWTC	2 cut(s)	388, 472
PkrI	GCNGC	1 cut(s)	319
PleI	GAGTC	3 cut(s)	111, 245, 310
PpsI	GAGTC	3 cut(s)	111, 245, 310
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	3 cut(s)	268, 405, 423
PstI	CTGCAG	2 cut(s)	232, 370
PsuI	RGATCY	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	201
SalI	GTCGAC	1 cut(s)	46
SapI	GCTCTTC	2 cut(s)	80, 327
SatI	GCNGC	1 cut(s)	318
Sau3AI	GATC	3 cut(s)	60, 153, 209
SchI	GAGTC	3 cut(s)	111, 245, 311
ScrFI	CCNGG	2 cut(s)	52, 68
SduI	GDGCHC	1 cut(s)	376
SfaNI	GCATC	2 cut(s)	262, 371
SfcI	CTRYAG	2 cut(s)	228, 366
SmiMI	CAYNNNNRTG	1 cut(s)	201
Sse9I	AATT	1 cut(s)	476
SsiI	CCGC	3 cut(s)	41, 294, 332
SspMI	CTAG	2 cut(s)	221, 508
StyD4I	CCNGG	2 cut(s)	50, 66
StyI	CCWWGG	3 cut(s)	24, 202, 399
TaaI	ACNGT	1 cut(s)	467
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	3 cut(s)	14, 47, 300
TasI	AATT	1 cut(s)	476
TfiI	GAWTC	2 cut(s)	388, 472
TscAI	CASTG	1 cut(s)	470
TseI	GCWGC	1 cut(s)	317
TspRI	CASTG	1 cut(s)	470
XmiI	GTMKAC	1 cut(s)	47
XmnI	GAANNNNTTC	2 cut(s)	420, 476
XspI	CTAG	2 cut(s)	221, 508
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.