Rh2AG545000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004557
Physical Location & Seq
Reverse (-)
77325278 .. 77340067
14790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG545000.1

Sequence Viewer

Length: 294 bp
ATGCCGCTAAAGAGGAGAATTAAAAGAAGTTCAGATTTAGCAAAGGTTGGTATAATTGCATTGTATACAGATAAGGACTGTGGTGTAAATGACACCACGTATGGTTTTGTATTGGTAGGTGCCGTACACCGGAAGACCACTTCTGTGGCACCAAACAGTGGTTTCCCGGCAGCAAATCACTCCAAAATCGATCAGATCTGTAGCGCGTTTCCTGTCCAGGGCTTTTCAAGAACTCCAACGAAGAAGATCATAGATACTGGTTACTGCAGCTTACAAGGATATACTTGGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.58

Weight (kDa)

9.62

Isoelectric Point (pI)

29.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 119, 148
AccB7I CCANNNNNTGG 1 cut(s) 158
AccI GTMKAC 1 cut(s) 65
AccII CGCG 1 cut(s) 206
AciI CCGC 1 cut(s) 5
AfaI GTAC 1 cut(s) 126
AfiI CCNNNNNNNGG 3 cut(s) 129, 158, 218
AgsI TTSAA 1 cut(s) 228
AjnI CCWGG 1 cut(s) 216
AleI CACNNNNGTG 1 cut(s) 143
AluBI AGCT 1 cut(s) 270
AluI AGCT 1 cut(s) 270
ApeKI GCWGC 2 cut(s) 170, 267
AspLEI GCGC 1 cut(s) 206
AsuC2I CCSGG 1 cut(s) 167
BanI GGYRCC 2 cut(s) 119, 148
BbsI GAAGAC 1 cut(s) 140
BbvI GCAGC 2 cut(s) 182, 279
BceAI ACGGC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 218
BcnI CCSGG 1 cut(s) 167
BfmI CTRYAG 2 cut(s) 199, 265
BglII AGATCT 1 cut(s) 195
BisI GCNGC 3 cut(s) 5, 171, 268
BlsI GCNGC 3 cut(s) 6, 172, 269
Bme1390I CCNGG 2 cut(s) 167, 218
BmiI GGNNCC 2 cut(s) 121, 150
BmrFI CCNGG 2 cut(s) 167, 218
BpiI GAAGAC 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 167
Bsa29I ATCGAT 1 cut(s) 189
BsaAI YACGTR 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 217
BsaWI WCCGGW 1 cut(s) 129
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 158, 218
Bse1I ACTGG 1 cut(s) 262
BseBI CCWGG 1 cut(s) 218
BseCI ATCGAT 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 217
BseLI CCNNNNNNNGG 3 cut(s) 129, 158, 218
BseNI ACTGG 1 cut(s) 262
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 2 cut(s) 182, 279
Bsh1236I CGCG 1 cut(s) 206
BshNI GGYRCC 2 cut(s) 119, 148
BshVI ATCGAT 1 cut(s) 189
BsiSI CCGG 2 cut(s) 130, 167
BslI CCNNNNNNNGG 3 cut(s) 129, 158, 218
Bsp143I GATC 3 cut(s) 190, 195, 246
BspACI CCGC 1 cut(s) 5
BspDI ATCGAT 1 cut(s) 189
BspFNI CGCG 1 cut(s) 206
BspLI GGNNCC 2 cut(s) 121, 150
BspMAI CTGCAG 1 cut(s) 269
BspT107I GGYRCC 2 cut(s) 119, 148
BsrI ACTGG 1 cut(s) 262
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 3 cut(s) 190, 195, 246
BssNAI GTATAC 1 cut(s) 66
Bst1107I GTATAC 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 2 cut(s) 80, 158
BstBAI YACGTR 1 cut(s) 99
BstFNI CGCG 1 cut(s) 206
BstHHI GCGC 1 cut(s) 206
BstKTI GATC 3 cut(s) 193, 198, 249
BstMBI GATC 3 cut(s) 190, 195, 246
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 2 cut(s) 165, 216
BstSFI CTRYAG 2 cut(s) 199, 265
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 2 cut(s) 182, 279
BstV2I GAAGAC 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 195
BstXI CCANNNNNNTGG 1 cut(s) 145
BstYI RGATCY 1 cut(s) 195
BstZ17I GTATAC 1 cut(s) 66
Bsu15I ATCGAT 1 cut(s) 189
BsuTUI ATCGAT 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 163
CfoI GCGC 1 cut(s) 206
ClaI ATCGAT 1 cut(s) 189
Csp6I GTAC 1 cut(s) 125
CviJI RGCY 2 cut(s) 222, 270
CviKI_1 RGCY 2 cut(s) 222, 270
CviQI GTAC 1 cut(s) 125
DpnI GATC 3 cut(s) 192, 197, 248
DpnII GATC 3 cut(s) 190, 195, 246
EcoRII CCWGG 1 cut(s) 216
FaiI YATR 5 cut(s) 53, 66, 102, 251, 282
FblI GTMKAC 1 cut(s) 65
Fnu4HI GCNGC 3 cut(s) 5, 171, 268
Fsp4HI GCNGC 3 cut(s) 5, 171, 268
GlaI GCGC 1 cut(s) 205
GluI GCNGC 3 cut(s) 5, 171, 268
HapII CCGG 2 cut(s) 130, 167
HhaI GCGC 1 cut(s) 206
Hin6I GCGC 1 cut(s) 204
HinP1I GCGC 1 cut(s) 204
HpaII CCGG 2 cut(s) 130, 167
Hpy166II GTNNAC 2 cut(s) 66, 127
Hpy188I TCNGA 2 cut(s) 34, 195
Hpy188III TCNNGA 1 cut(s) 228
Hpy8I GTNNAC 2 cut(s) 66, 127
HpyCH4III ACNGT 2 cut(s) 80, 158
HpyCH4IV ACGT 1 cut(s) 98
HpyCH4V TGCA 2 cut(s) 59, 267
HpySE526I ACGT 1 cut(s) 98
HspAI GCGC 1 cut(s) 204
Kzo9I GATC 3 cut(s) 190, 195, 246
LpnPI CCDG 6 cut(s) 143, 180, 203, 225, 230, 243
Lsp1109I GCAGC 2 cut(s) 182, 279
MaeII ACGT 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 260
MalI GATC 3 cut(s) 192, 197, 248
MboI GATC 3 cut(s) 190, 195, 246
MboII GAAGA 3 cut(s) 145, 253, 256
MflI RGATCY 1 cut(s) 195
MluCI AATT 2 cut(s) 18, 54
MmeI TCCRAC 1 cut(s) 260
MnlI CCTC 1 cut(s) 6
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 1 cut(s) 143
MspI CCGG 2 cut(s) 130, 167
MspR9I CCNGG 2 cut(s) 167, 218
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 1 cut(s) 206
NciI CCSGG 1 cut(s) 167
NdeII GATC 3 cut(s) 190, 195, 246
NlaIV GGNNCC 2 cut(s) 121, 150
OliI CACNNNNGTG 1 cut(s) 143
PflMI CCANNNNNTGG 1 cut(s) 158
PkrI GCNGC 3 cut(s) 6, 172, 269
Ppu21I YACGTR 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 2 cut(s) 121, 150
PstI CTGCAG 1 cut(s) 269
PsuI RGATCY 1 cut(s) 195
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
RseI CAYNNNNRTG 1 cut(s) 143
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 3 cut(s) 5, 171, 268
Sau3AI GATC 3 cut(s) 190, 195, 246
ScrFI CCNGG 2 cut(s) 167, 218
SetI ASST 4 cut(s) 48, 101, 121, 272
SfcI CTRYAG 2 cut(s) 199, 265
SmiMI CAYNNNNRTG 1 cut(s) 143
Sse9I AATT 2 cut(s) 18, 54
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 2 cut(s) 165, 216
TaaI ACNGT 2 cut(s) 80, 158
TaiI ACGT 1 cut(s) 101
TaqI TCGA 1 cut(s) 189
TasI AATT 2 cut(s) 18, 54
TauI GCSGC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 1 cut(s) 163
TseI GCWGC 2 cut(s) 170, 267
TspRI CASTG 1 cut(s) 163
Van91I CCANNNNNTGG 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.