Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004557

Physical Location & Seq

Genomic Coordinates Reverse (-)

25158139 .. 25160348

Gene Structure 2210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG213200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGGTTGTTTGGGTGCTTCACTGGAGGGAGGGGATGCCTTGTTTTATAGCCGAGAAGATGATTTCGCTCGCCTCTACTCCGCCATCGAGTCCGACATTGAAGCTGCTCTTCAGAAAGCGGAGCTTGCTTCAAAAGAAAAAAGTATGGCATCTGCAGGTGCTCTGACTGCCAAGATTCGCCGGACCAAGGCTCCATTGCTTGAAGAGGTTCCCAAAACTTGTTTAGCGCTGGAAGGTGATTTTGGATGGGTATTGATTGGACAAAAGATGATTGCTTTTGAAGAGAATTCTTGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005215 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0008565 GO:0009506 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0090150 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

99

Amino Acids

10.76

Weight (kDa)

4.69

Isoelectric Point (pI)

53.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004557)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027547
rosa_multiflora	Rmu_sc0002209.1_g000021
rosa_roxburghii	Rroxscaffold_1G00010960
rosa_samantha	Rh1BG400500 Rh1CG414900 Rh1DG430500 Rh2AG545000 Rh2BG114400 Rh2BG227500 Rh2BG319200 Rh2BG435500 Rh2BG517400 Rh2DG416300 Rh2DG529200 Rh2DG567300 Rh3AG319500 Rh4AG015800 Rh4BG264500 Rh5AG067300 Rh5AG083300 Rh5AG213200 Rh5AG296200 Rh5AG296600 Rh5CG075100 Rh5DG116300 Rh6CG098400 Rh6DG091800 Rh6DG376500 Rh7AG428900 Rh7CG242900 Rh7CG447800 Rh7DG200000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	146
Acc36I	ACCTGC	1 cut(s)	146
AciI	CCGC	2 cut(s)	81, 119
AcsI	RAATTY	1 cut(s)	286
AcuI	CTGAAG	1 cut(s)	95
AfeI	AGCGCT	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	187
AgsI	TTSAA	4 cut(s)	101, 132, 203, 281
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AluBI	AGCT	2 cut(s)	104, 124
AluI	AGCT	2 cut(s)	104, 124
Alw21I	GWGCWC	1 cut(s)	163
Aor51HI	AGCGCT	1 cut(s)	228
ApeKI	GCWGC	1 cut(s)	104
ApoI	RAATTY	1 cut(s)	286
Asp700I	GAANNNNTTC	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	2 cut(s)	92, 240
BfmI	CTRYAG	1 cut(s)	153
BfoI	RGCGCY	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	146
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	2 cut(s)	192, 210
BmsI	GCATC	2 cut(s)	25, 158
BpmI	CTGGAG	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	2 cut(s)	40, 251
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMI	GCAATG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	163
BspACI	CCGC	2 cut(s)	81, 119
BspLI	GGNNCC	2 cut(s)	192, 210
BspMAI	CTGCAG	1 cut(s)	157
BspMI	ACCTGC	1 cut(s)	146
BspQI	GCTCTTC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	27
BssECI	CCNNGG	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	186
Bst6I	CTCTTC	3 cut(s)	114, 198, 276
BstC8I	GCNNGC	2 cut(s)	70, 126
BstF5I	GGATG	2 cut(s)	40, 251
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 167
BstSFI	CTRYAG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	40, 251
BtsIMutI	CAGTG	1 cut(s)	20
BveI	ACCTGC	1 cut(s)	146
Cac8I	GCNNGC	2 cut(s)	70, 126
CfoI	GCGC	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	183
CviJI	RGCY	4 cut(s)	51, 104, 124, 191
CviKI_1	RGCY	4 cut(s)	51, 104, 124, 191
Eam1104I	CTCTTC	3 cut(s)	114, 198, 276
EarI	CTCTTC	3 cut(s)	114, 198, 276
EciI	GGCGGA	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	183
Eco47III	AGCGCT	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	95
EcoRI	GAATTC	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaiI	YATR	2 cut(s)	48, 146
FalI	AAGNNNNNCTT	4 cut(s)	93, 125, 108, 140
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	2 cut(s)	47, 258
Fsp4HI	GCNGC	1 cut(s)	105
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	1 cut(s)	105
GsuI	CTGGAG	1 cut(s)	44
HaeII	RGCGCY	1 cut(s)	230
HapII	CCGG	1 cut(s)	181
HhaI	GCGC	1 cut(s)	229
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HinfI	GANTC	2 cut(s)	89, 175
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	1 cut(s)	248
Hpy188I	TCNGA	3 cut(s)	94, 114, 165
HpyAV	CCTTC	1 cut(s)	227
HpyCH4V	TGCA	1 cut(s)	155
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 167
HspAI	GCGC	1 cut(s)	227
LguI	GCTCTTC	1 cut(s)	114
LmnI	GCTCC	2 cut(s)	121, 196
LpnPI	CCDG	4 cut(s)	8, 141, 194, 215
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	2 cut(s)	25, 158
MboII	GAAGA	4 cut(s)	68, 101, 215, 293
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	1 cut(s)	286
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	4 cut(s)	19, 23, 83, 199
MroXI	GAANNNNTTC	1 cut(s)	207
MspI	CCGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	2 cut(s)	125, 167
NlaIV	GGNNCC	2 cut(s)	192, 210
NmeAIII	GCCGAG	1 cut(s)	77
PaqCI	CACCTGC	1 cut(s)	146
PciSI	GCTCTTC	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	175
PkrI	GCNGC	1 cut(s)	106
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	192, 210
PspPI	GGNCC	1 cut(s)	183
PstI	CTGCAG	1 cut(s)	157
SapI	GCTCTTC	1 cut(s)	114
SatI	GCNGC	1 cut(s)	105
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	1 cut(s)	98
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	5 cut(s)	106, 126, 160, 210, 238
SfaNI	GCATC	2 cut(s)	25, 158
SfcI	CTRYAG	1 cut(s)	153
SinI	GGWCC	1 cut(s)	183
Sse9I	AATT	1 cut(s)	286
SsiI	CCGC	2 cut(s)	81, 119
StyI	CCWWGG	1 cut(s)	186
TaqI	TCGA	1 cut(s)	87
TasI	AATT	1 cut(s)	286
TfiI	GAWTC	1 cut(s)	175
TscAI	CASTG	1 cut(s)	27
TseI	GCWGC	1 cut(s)	104
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	183
XapI	RAATTY	1 cut(s)	286
XmnI	GAANNNNTTC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.