Rh6DG091800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0004557
Physical Location & Seq
Forward (+)
10793185 .. 10793454
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG091800.1

Sequence Viewer

Length: 270 bp
ATGGCGTCCTCCTCGACGATATCCAAGGGAAGGACGACGGTAGGGTTGACCCGGAGGACGATCTACCAGGTCAGCAGGGAGCGGAAGAGCGAGGAAGCCGAGGAAGGCTTCAGGCAACTCCGAAGGAGGAGGGAAGGTGAACAGGTCAGGCAGATCGGCGGCGACCTTCCTCCTGTCTCTCTTGGTAGCCTCGTTCACAACCATGGTAGATCTGAGAGCCTAGCTTCTGCAGATCGTGAAGCGAAGGTCGGTGCTTCTGGGGTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.74

Weight (kDa)

10.72

Isoelectric Point (pI)

71.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 82
AciI CCGC 2 cut(s) 82, 159
AcuI CTGAAG 1 cut(s) 94
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 30
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
Alw26I GTCTC 1 cut(s) 181
AsuC2I CCSGG 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 68
BcnI CCSGG 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 228
BglII AGATCT 1 cut(s) 209
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
Bme1390I CCNGG 2 cut(s) 52, 68
BmrFI CCNGG 2 cut(s) 52, 68
BpuMI CCSGG 1 cut(s) 52
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 24, 99, 202
BsaXI ACNNNNNCTCC 2 cut(s) 121, 151
Bsc4I CCNNNNNNNGG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 3 cut(s) 24, 99, 202
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 142
BsiSI CCGG 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 181
Bsp143I GATC 4 cut(s) 60, 153, 209, 232
Bsp19I CCATGG 1 cut(s) 202
BspACI CCGC 2 cut(s) 82, 159
BspCNI CTCAG 1 cut(s) 205
BspMAI CTGCAG 1 cut(s) 232
BspQI GCTCTTC 1 cut(s) 80
BsrBI CCGCTC 1 cut(s) 82
BssECI CCNNGG 3 cut(s) 24, 99, 202
BssMI GATC 4 cut(s) 60, 153, 209, 232
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 24, 202
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 80
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 1 cut(s) 213
BstDSI CCRYGG 1 cut(s) 202
BstKTI GATC 4 cut(s) 63, 156, 212, 235
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 4 cut(s) 60, 153, 209, 232
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 2 cut(s) 50, 66
BstSFI CTRYAG 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 202
CsiI ACCWGGT 1 cut(s) 66
CviAII CATG 1 cut(s) 203
CviJI RGCY 5 cut(s) 98, 108, 189, 219, 224
CviKI_1 RGCY 5 cut(s) 98, 108, 189, 219, 224
DdeI CTNAG 1 cut(s) 213
DpnI GATC 4 cut(s) 62, 155, 211, 234
DpnII GATC 4 cut(s) 60, 153, 209, 232
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
Eco130I CCWWGG 2 cut(s) 24, 202
Eco32I GATATC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 66
EcoRV GATATC 1 cut(s) 21
EcoT14I CCWWGG 2 cut(s) 24, 202
ErhI CCWWGG 2 cut(s) 24, 202
FaeI CATG 1 cut(s) 206
FaiI YATR 1 cut(s) 204
FatI CATG 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 160
Fsp4HI GCNGC 1 cut(s) 160
FspBI CTAG 1 cut(s) 221
GluI GCNGC 1 cut(s) 160
HapII CCGG 1 cut(s) 52
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 206
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HpaII CCGG 1 cut(s) 52
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 3 cut(s) 48, 140, 196
Hpy188I TCNGA 2 cut(s) 122, 214
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 3 cut(s) 48, 140, 196
Hpy99I CGWCG 2 cut(s) 19, 40
HpyAV CCTTC 6 cut(s) 24, 98, 117, 128, 176, 238
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 1 cut(s) 230
HpyF3I CTNAG 1 cut(s) 213
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 206
Kzo9I GATC 4 cut(s) 60, 153, 209, 232
LguI GCTCTTC 1 cut(s) 80
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 9 cut(s) 53, 61, 65, 80, 97, 128, 133, 186, 243
MabI ACCWGGT 1 cut(s) 66
MaeI CTAG 1 cut(s) 221
MalI GATC 4 cut(s) 62, 155, 211, 234
MbiI CCGCTC 1 cut(s) 82
MboI GATC 4 cut(s) 60, 153, 209, 232
MboII GAAGA 1 cut(s) 97
MflI RGATCY 1 cut(s) 209
MluCI AATT 1 cut(s) 265
MnlI CCTC 9 cut(s) 19, 22, 48, 85, 94, 120, 123, 180, 200
MseI TTAA 2 cut(s) 264, 268
MslI CAYNNNNRTG 1 cut(s) 201
MspI CCGG 1 cut(s) 52
MspR9I CCNGG 2 cut(s) 52, 68
MvaI CCWGG 1 cut(s) 68
NciI CCSGG 1 cut(s) 52
NcoI CCATGG 1 cut(s) 202
NdeII GATC 4 cut(s) 60, 153, 209, 232
NlaIII CATG 1 cut(s) 206
NmeAIII GCCGAG 1 cut(s) 124
PacI TTAATTAA 1 cut(s) 268
PciSI GCTCTTC 1 cut(s) 80
PkrI GCNGC 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PstI CTGCAG 1 cut(s) 232
PsuI RGATCY 1 cut(s) 209
RseI CAYNNNNRTG 1 cut(s) 201
SapI GCTCTTC 1 cut(s) 80
SaqAI TTAA 2 cut(s) 264, 268
SatI GCNGC 1 cut(s) 160
Sau3AI GATC 4 cut(s) 60, 153, 209, 232
ScrFI CCNGG 2 cut(s) 52, 68
SetI ASST 6 cut(s) 72, 139, 147, 168, 226, 249
SexAI ACCWGGT 1 cut(s) 66
SfcI CTRYAG 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 201
Sse9I AATT 1 cut(s) 265
SsiI CCGC 2 cut(s) 82, 159
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 2 cut(s) 50, 66
StyI CCWWGG 2 cut(s) 24, 202
TaaI ACNGT 1 cut(s) 40
TaqI TCGA 1 cut(s) 14
TasI AATT 1 cut(s) 265
TauI GCSGC 1 cut(s) 162
Tru1I TTAA 2 cut(s) 264, 268
Tru9I TTAA 2 cut(s) 264, 268
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.