Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004557

Physical Location & Seq

Genomic Coordinates Forward (+)

22696794 .. 22700001

Gene Structure 3208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG242900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCAGGAAATACATGTTCTATGGGAGCCGTTTTTGTTTTATTTGCAGGATTTCACTATTGGTTGCGAAAAATCTCTGTACTGTGAGGTTGAACCAGATGTTGGAGATAAAATTCCTCATAGAAAAAAATTCACGAAGGACTCTAATGTCTCCGGCGACGAAGCCTTCGCTCGCCTCTACTCTGCAGTCGAGTTCGACATTGAAGCTGCTCTTCAGAAAGCGGAGCTTGCTTCAAAAGAGAAAAGTAGGGCATTTGCAGTTGCTCTTAATGCCGTGATTCGCCGGACCAAGGCTCGATTGCTTAAAGAGGTTCCCAAGTTGCAGAGATTGGCTGTAAAGAAGATTCATAGAAGAAAGGAGTTACAAGGAGCTGTTGAGTCTGTAGAGAGCTTAAGAGGTGATTTATCCATGTTTTGGTCCAGCCACTTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005215 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0008565 GO:0009506 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0090150 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

144

Amino Acids

16.56

Weight (kDa)

8.87

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004557)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027547
rosa_multiflora	Rmu_sc0002209.1_g000021
rosa_roxburghii	Rroxscaffold_1G00010960
rosa_samantha	Rh1BG400500 Rh1CG414900 Rh1DG430500 Rh2AG545000 Rh2BG114400 Rh2BG227500 Rh2BG319200 Rh2BG435500 Rh2BG517400 Rh2DG416300 Rh2DG529200 Rh2DG567300 Rh3AG319500 Rh4AG015800 Rh4BG264500 Rh5AG067300 Rh5AG083300 Rh5AG213200 Rh5AG296200 Rh5AG296600 Rh5CG075100 Rh5DG116300 Rh6CG098400 Rh6DG091800 Rh6DG376500 Rh7AG428900 Rh7CG242900 Rh7CG447800 Rh7DG200000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AccB7I	CCANNNNNTGG	2 cut(s)	101, 414
AciI	CCGC	1 cut(s)	221
AcsI	RAATTY	2 cut(s)	111, 128
AcuI	CTGAAG	1 cut(s)	197
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	3 cut(s)	101, 289, 414
AflII	CTTAAG	1 cut(s)	391
AflIII	ACRYGT	1 cut(s)	13
AgsI	TTSAA	3 cut(s)	92, 203, 234
AjuI	GAANNNNNNNTTGG	2 cut(s)	84, 116
AluBI	AGCT	4 cut(s)	206, 226, 371, 390
AluI	AGCT	4 cut(s)	206, 226, 371, 390
Alw26I	GTCTC	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	2 cut(s)	111, 128
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
AspS9I	GGNCC	2 cut(s)	285, 417
AsuHPI	GGTGA	1 cut(s)	410
AvaII	GGWCC	2 cut(s)	285, 417
BbvI	GCAGC	1 cut(s)	193
BceAI	ACGGC	2 cut(s)	13, 257
BcoDI	GTCTC	1 cut(s)	154
BfmI	CTRYAG	2 cut(s)	183, 381
BfrI	CTTAAG	1 cut(s)	391
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme18I	GGWCC	2 cut(s)	285, 417
BmgT120I	GGNCC	2 cut(s)	285, 417
BmiI	GGNNCC	2 cut(s)	27, 312
BsaJI	CCNNGG	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 289, 414
BseDI	CCNNGG	1 cut(s)	288
BseLI	CCNNNNNNNGG	3 cut(s)	101, 289, 414
BseXI	GCAGC	1 cut(s)	193
BsiSI	CCGG	2 cut(s)	153, 283
BslI	CCNNNNNNNGG	3 cut(s)	101, 289, 414
BsmAI	GTCTC	1 cut(s)	154
BspACI	CCGC	1 cut(s)	221
BspLI	GGNNCC	2 cut(s)	27, 312
BspMAI	CTGCAG	1 cut(s)	187
BspQI	GCTCTTC	1 cut(s)	216
BspTI	CTTAAG	1 cut(s)	391
BssECI	CCNNGG	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	83
Bst6I	CTCTTC	1 cut(s)	216
BstAFI	CTTAAG	1 cut(s)	391
BstC8I	GCNNGC	2 cut(s)	172, 228
BstMAI	GTCTC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 269
BstNSI	RCATGY	1 cut(s)	17
BstSFI	CTRYAG	2 cut(s)	183, 381
BstV1I	GCAGC	1 cut(s)	193
Cac8I	GCNNGC	2 cut(s)	172, 228
Cfr13I	GGNCC	2 cut(s)	285, 417
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	2 cut(s)	14, 409
CviJI	RGCY	9 cut(s)	28, 164, 206, 226, 293, 332, 371, 390, 423
CviKI_1	RGCY	9 cut(s)	28, 164, 206, 226, 293, 332, 371, 390, 423
CviQI	GTAC	1 cut(s)	79
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	288
Eco47I	GGWCC	2 cut(s)	285, 417
Eco57I	CTGAAG	1 cut(s)	197
EcoT14I	CCWWGG	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	2 cut(s)	17, 412
FaiI	YATR	5 cut(s)	15, 22, 120, 348, 410
FalI	AAGNNNNNCTT	4 cut(s)	195, 227, 210, 242
FatI	CATG	2 cut(s)	13, 408
Fnu4HI	GCNGC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	207
GluI	GCNGC	1 cut(s)	207
HapII	CCGG	2 cut(s)	153, 283
Hin1II	CATG	2 cut(s)	17, 412
HinfI	GANTC	4 cut(s)	140, 277, 343, 377
HpaII	CCGG	2 cut(s)	153, 283
HphI	GGTGA	1 cut(s)	410
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	130, 175
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4V	TGCA	5 cut(s)	4, 46, 185, 257, 322
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 269
Hsp92II	CATG	2 cut(s)	17, 412
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	3 cut(s)	25, 223, 368
LpnPI	CCDG	4 cut(s)	32, 108, 166, 296
Lsp1109I	GCAGC	1 cut(s)	193
MaeIII	GTNAC	1 cut(s)	360
MboII	GAAGA	3 cut(s)	203, 352, 363
MluCI	AATT	2 cut(s)	111, 128
MlyI	GAGTC	2 cut(s)	134, 386
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	5 cut(s)	79, 126, 185, 301, 389
MseI	TTAA	4 cut(s)	267, 303, 392, 433
MspCI	CTTAAG	1 cut(s)	391
MspI	CCGG	2 cut(s)	153, 283
MwoI	GCNNNNNNNGC	2 cut(s)	227, 269
NlaIII	CATG	2 cut(s)	17, 412
NlaIV	GGNNCC	2 cut(s)	27, 312
NspI	RCATGY	1 cut(s)	17
PciI	ACATGT	1 cut(s)	13
PciSI	GCTCTTC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	277, 343
PflMI	CCANNNNNTGG	2 cut(s)	101, 414
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	2 cut(s)	134, 385
PpsI	GAGTC	2 cut(s)	134, 385
PscI	ACATGT	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	27, 312
PspPI	GGNCC	2 cut(s)	285, 417
PstI	CTGCAG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	4 cut(s)	267, 303, 392, 433
SatI	GCNGC	1 cut(s)	207
Sau96I	GGNCC	2 cut(s)	285, 417
SchI	GAGTC	2 cut(s)	134, 386
SetI	ASST	7 cut(s)	90, 208, 228, 312, 373, 392, 400
SfcI	CTRYAG	2 cut(s)	183, 381
SinI	GGWCC	2 cut(s)	285, 417
SmlI	CTYRAG	1 cut(s)	391
SmoI	CTYRAG	1 cut(s)	391
Sse9I	AATT	2 cut(s)	111, 128
SsiI	CCGC	1 cut(s)	221
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	83
TaqI	TCGA	3 cut(s)	189, 195, 295
TasI	AATT	2 cut(s)	111, 128
TatI	WGTACW	1 cut(s)	78
TfiI	GAWTC	2 cut(s)	277, 343
Tru1I	TTAA	4 cut(s)	267, 303, 392, 433
Tru9I	TTAA	4 cut(s)	267, 303, 392, 433
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	1 cut(s)	335
Van91I	CCANNNNNTGG	2 cut(s)	101, 414
Vha464I	CTTAAG	1 cut(s)	391
VpaK11BI	GGWCC	2 cut(s)	285, 417
XapI	RAATTY	2 cut(s)	111, 128
XceI	RCATGY	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.