Rh4AG015800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0004557
Physical Location & Seq
Reverse (-)
3174244 .. 3174805
562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG015800.1

Sequence Viewer

Length: 318 bp
ATGGATCGCCTGGAGCGCATGACGTCCTCCTTGACGATATTCAAGGGAAGGACGACGGTGGGGTCGACCCGGAGGGCGATCTGCCAGGTCAGCAAGGAGGGGAAGAGCGAGGAAGCCAAGGAAGGCTTCCGGCGACTCCGGAGGAGGAGGGAAGGTGAACAGGTCGGGCAGATCGGCGGCGACCTTCCTCCTGGCTCTCTTGGTAGCCTCGTTCACAACCATGGTAAATCTGAGCTTTGTCGAAAAAACCATGGTAGATCTGAGAGCCTAGCTTCTGCAGATCGTGAAGAGAAGGTCGATGCTTTTGGGGTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.62

Weight (kDa)

9.9

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 61
AatII GACGTC 1 cut(s) 26
AccI GTMKAC 1 cut(s) 65
AccIII TCCGGA 1 cut(s) 138
AciI CCGC 1 cut(s) 177
AclWI GGATC 1 cut(s) 12
AcyI GRCGYC 1 cut(s) 23
AgsI TTSAA 1 cut(s) 43
AjnI CCWGG 3 cut(s) 9, 84, 190
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
AluBI AGCT 2 cut(s) 235, 272
AluI AGCT 2 cut(s) 235, 272
AlwI GGATC 1 cut(s) 12
Aor13HI TCCGGA 1 cut(s) 138
AspLEI GCGC 1 cut(s) 18
AsuC2I CCSGG 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 167
BciT130I CCWGG 3 cut(s) 11, 86, 192
BcnI CCSGG 1 cut(s) 70
BfaI CTAG 1 cut(s) 269
BfmI CTRYAG 1 cut(s) 276
BglII AGATCT 1 cut(s) 257
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
Bme1390I CCNGG 4 cut(s) 11, 70, 86, 192
BmrFI CCNGG 4 cut(s) 11, 70, 86, 192
BmsI GCATC 1 cut(s) 289
BpmI CTGGAG 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 3 cut(s) 117, 220, 250
BsaWI WCCGGW 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
BseAI TCCGGA 1 cut(s) 138
BseBI CCWGG 3 cut(s) 11, 86, 192
BseDI CCNNGG 3 cut(s) 117, 220, 250
BseMII CTCAG 2 cut(s) 222, 252
BseRI GAGGAG 2 cut(s) 157, 160
BsiSI CCGG 3 cut(s) 70, 130, 139
Bsp13I TCCGGA 1 cut(s) 138
Bsp143I GATC 5 cut(s) 4, 78, 171, 257, 280
Bsp19I CCATGG 2 cut(s) 220, 250
BspACI CCGC 1 cut(s) 177
BspCNI CTCAG 2 cut(s) 223, 253
BspEI TCCGGA 1 cut(s) 138
BspMAI CTGCAG 1 cut(s) 280
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 98
BssECI CCNNGG 3 cut(s) 117, 220, 250
BssMI GATC 5 cut(s) 4, 78, 171, 257, 280
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 3 cut(s) 117, 220, 250
Bst2UI CCWGG 3 cut(s) 11, 86, 192
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 2 cut(s) 98, 282
BstACI GRCGYC 1 cut(s) 23
BstDEI CTNAG 2 cut(s) 231, 261
BstDSI CCRYGG 2 cut(s) 220, 250
BstHHI GCGC 1 cut(s) 18
BstKTI GATC 5 cut(s) 7, 81, 174, 260, 283
BstMBI GATC 5 cut(s) 4, 78, 171, 257, 280
BstMWI GCNNNNNNNGC 2 cut(s) 15, 90
BstNI CCWGG 3 cut(s) 11, 86, 192
BstSCI CCNGG 4 cut(s) 9, 68, 84, 190
BstSFI CTRYAG 1 cut(s) 276
BstX2I RGATCY 1 cut(s) 257
BstYI RGATCY 1 cut(s) 257
BtgI CCRYGG 2 cut(s) 220, 250
CfoI GCGC 1 cut(s) 18
CviAII CATG 3 cut(s) 19, 221, 251
CviJI RGCY 7 cut(s) 116, 126, 195, 207, 235, 267, 272
CviKI_1 RGCY 7 cut(s) 116, 126, 195, 207, 235, 267, 272
DdeI CTNAG 2 cut(s) 231, 261
DpnI GATC 5 cut(s) 6, 80, 173, 259, 282
DpnII GATC 5 cut(s) 4, 78, 171, 257, 280
DrdI GACNNNNNNGTC 1 cut(s) 61
DseDI GACNNNNNNGTC 1 cut(s) 61
Eam1104I CTCTTC 2 cut(s) 98, 282
EarI CTCTTC 2 cut(s) 98, 282
Eco130I CCWWGG 3 cut(s) 117, 220, 250
EcoRII CCWGG 3 cut(s) 9, 84, 190
EcoT14I CCWWGG 3 cut(s) 117, 220, 250
ErhI CCWWGG 3 cut(s) 117, 220, 250
FaeI CATG 3 cut(s) 22, 224, 254
FaiI YATR 3 cut(s) 20, 222, 252
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FatI CATG 3 cut(s) 18, 220, 250
FblI GTMKAC 1 cut(s) 65
Fnu4HI GCNGC 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 178
FspBI CTAG 1 cut(s) 269
GlaI GCGC 1 cut(s) 17
GluI GCNGC 1 cut(s) 178
GsuI CTGGAG 1 cut(s) 32
HapII CCGG 3 cut(s) 70, 130, 139
HhaI GCGC 1 cut(s) 18
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 3 cut(s) 22, 224, 254
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HinfI GANTC 1 cut(s) 135
HpaII CCGG 3 cut(s) 70, 130, 139
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 3 cut(s) 66, 158, 214
Hpy188I TCNGA 2 cut(s) 232, 262
Hpy188III TCNNGA 2 cut(s) 139, 284
Hpy8I GTNNAC 3 cut(s) 66, 158, 214
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 5 cut(s) 42, 116, 146, 194, 286
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 90
HpyF3I CTNAG 2 cut(s) 231, 261
HpySE526I ACGT 1 cut(s) 23
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 3 cut(s) 22, 224, 254
HspAI GCGC 1 cut(s) 16
Kpn2I TCCGGA 1 cut(s) 138
Kzo9I GATC 5 cut(s) 4, 78, 171, 257, 280
LguI GCTCTTC 1 cut(s) 98
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 9 cut(s) 23, 71, 83, 98, 143, 146, 152, 177, 204
LweI GCATC 1 cut(s) 289
MaeI CTAG 1 cut(s) 269
MaeII ACGT 1 cut(s) 23
MalI GATC 5 cut(s) 6, 80, 173, 259, 282
MboI GATC 5 cut(s) 4, 78, 171, 257, 280
MboII GAAGA 2 cut(s) 115, 299
MflI RGATCY 1 cut(s) 257
MluCI AATT 1 cut(s) 313
MlyI GAGTC 1 cut(s) 129
MnlI CCTC 9 cut(s) 37, 66, 91, 103, 135, 138, 141, 198, 218
MroI TCCGGA 1 cut(s) 138
MseI TTAA 2 cut(s) 312, 316
MslI CAYNNNNRTG 1 cut(s) 219
MspI CCGG 3 cut(s) 70, 130, 139
MspR9I CCNGG 4 cut(s) 11, 70, 86, 192
MvaI CCWGG 3 cut(s) 11, 86, 192
MwoI GCNNNNNNNGC 2 cut(s) 15, 90
NciI CCSGG 1 cut(s) 70
NcoI CCATGG 2 cut(s) 220, 250
NdeII GATC 5 cut(s) 4, 78, 171, 257, 280
NlaIII CATG 3 cut(s) 22, 224, 254
PacI TTAATTAA 1 cut(s) 316
PciSI GCTCTTC 1 cut(s) 98
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PkrI GCNGC 1 cut(s) 179
PleI GAGTC 1 cut(s) 129
PpsI GAGTC 1 cut(s) 129
Psp6I CCWGG 3 cut(s) 9, 84, 190
PspGI CCWGG 3 cut(s) 9, 84, 190
PstI CTGCAG 1 cut(s) 280
PsuI RGATCY 1 cut(s) 257
RseI CAYNNNNRTG 1 cut(s) 219
SalI GTCGAC 1 cut(s) 64
SapI GCTCTTC 1 cut(s) 98
SaqAI TTAA 2 cut(s) 312, 316
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 5 cut(s) 4, 78, 171, 257, 280
SchI GAGTC 1 cut(s) 129
ScrFI CCNGG 4 cut(s) 11, 70, 86, 192
SetI ASST 8 cut(s) 26, 90, 157, 165, 186, 237, 274, 297
SfaNI GCATC 1 cut(s) 289
SfcI CTRYAG 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 219
Sse9I AATT 1 cut(s) 313
SsiI CCGC 1 cut(s) 177
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 4 cut(s) 9, 68, 84, 190
StyI CCWWGG 3 cut(s) 117, 220, 250
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 26
TaqI TCGA 3 cut(s) 65, 241, 297
TasI AATT 1 cut(s) 313
TauI GCSGC 1 cut(s) 180
Tru1I TTAA 2 cut(s) 312, 316
Tru9I TTAA 2 cut(s) 312, 316
XmiI GTMKAC 1 cut(s) 65
XspI CTAG 1 cut(s) 269
ZraI GACGTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.