Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004557

Physical Location & Seq

Genomic Coordinates Forward (+)

60453395 .. 60456074

Gene Structure 2680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG416300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTTGAATACACTAGGAGTAGTTTGGAAGCAACATAATGGGGTTACTGTAAATAAGTGTATTAATAAGAAAGACTCTAACGTCTCTGGTGCCGATGCCTTCACTCGCCTCTACTCCGCCATCGAGTCCGACATTGAAGCTGCTCTTCAGAAAGCGAGGCTTGCTTCAAAAGAAAAAAGTATGGCATCTGCAGGTGCTCTGACTGCCAAGATTCGCCGGACCAAGGCTCCATTGCTTGAAGAGGTTCCCAAAACTTGTTTAGCGCTGGAAGGTGATTTTGGATGGGTATTGATTGGACAAAAGATGATTGCTTTTGAAGACAATTCTTGGCAGGTTCTTGGCCCAGAAAATTTGCAATCGGAAAAGCTGAAGTGTGTAACTGTGTATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005215 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0008565 GO:0009506 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0090150 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

130

Amino Acids

14.25

Weight (kDa)

8.79

Isoelectric Point (pI)

45.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Publication-ready

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Orthologous Genes (Group: OG0004557)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027547
rosa_multiflora	Rmu_sc0002209.1_g000021
rosa_roxburghii	Rroxscaffold_1G00010960
rosa_samantha	Rh1BG400500 Rh1CG414900 Rh1DG430500 Rh2AG545000 Rh2BG114400 Rh2BG227500 Rh2BG319200 Rh2BG435500 Rh2BG517400 Rh2DG416300 Rh2DG529200 Rh2DG567300 Rh3AG319500 Rh4AG015800 Rh4BG264500 Rh5AG067300 Rh5AG083300 Rh5AG213200 Rh5AG296200 Rh5AG296600 Rh5CG075100 Rh5DG116300 Rh6CG098400 Rh6DG091800 Rh6DG376500 Rh7AG428900 Rh7CG242900 Rh7CG447800 Rh7DG200000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	182
AasI	GACNNNNNNGTC	1 cut(s)	80
Acc36I	ACCTGC	2 cut(s)	182, 322
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	1 cut(s)	117
AcsI	RAATTY	1 cut(s)	349
AcuI	CTGAAG	2 cut(s)	131, 389
AfeI	AGCGCT	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	5 cut(s)	7, 137, 168, 239, 317
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
AluBI	AGCT	2 cut(s)	140, 367
AluI	AGCT	2 cut(s)	140, 367
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	1 cut(s)	88
Aor51HI	AGCGCT	1 cut(s)	264
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	349
AseI	ATTAAT	1 cut(s)	63
Asp700I	GAANNNNTTC	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	2 cut(s)	219, 341
AsuHPI	GGTGA	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	2 cut(s)	128, 276
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	189
BfoI	RGCGCY	1 cut(s)	266
BfuAI	ACCTGC	2 cut(s)	182, 322
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	2 cut(s)	219, 341
BmiI	GGNNCC	3 cut(s)	91, 228, 246
BmsI	GCATC	2 cut(s)	85, 194
BpiI	GAAGAC	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	222
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse3DI	GCAATG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	287
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	127
BshFI	GGCC	1 cut(s)	342
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	217
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	88
BsmBI	CGTCTC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	199
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	1 cut(s)	342
BspLI	GGNNCC	3 cut(s)	91, 228, 246
BspMAI	CTGCAG	1 cut(s)	193
BspMI	ACCTGC	2 cut(s)	182, 322
BspQI	GCTCTTC	1 cut(s)	150
BspT107I	GGYRCC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	222
Bst4CI	ACNGT	2 cut(s)	49, 382
Bst6I	CTCTTC	2 cut(s)	150, 234
BstC8I	GCNNGC	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	287
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	265
BstMAI	GTCTC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 203
BstSFI	CTRYAG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	127
BstV2I	GAAGAC	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	287
BveI	ACCTGC	2 cut(s)	182, 322
Cac8I	GCNNGC	1 cut(s)	162
CfoI	GCGC	1 cut(s)	265
Cfr13I	GGNCC	2 cut(s)	219, 341
CviJI	RGCY	5 cut(s)	140, 160, 227, 342, 367
CviKI_1	RGCY	5 cut(s)	140, 160, 227, 342, 367
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
Eam1104I	CTCTTC	2 cut(s)	150, 234
EarI	CTCTTC	2 cut(s)	150, 234
EciI	GGCGGA	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	219
Eco47III	AGCGCT	1 cut(s)	264
Eco57I	CTGAAG	2 cut(s)	131, 389
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
Esp3I	CGTCTC	1 cut(s)	88
FaiI	YATR	3 cut(s)	36, 182, 387
FalI	AAGNNNNNCTT	4 cut(s)	129, 161, 144, 176
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	1 cut(s)	14
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	141
HaeII	RGCGCY	1 cut(s)	266
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	1 cut(s)	217
HhaI	GCGC	1 cut(s)	265
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HinfI	GANTC	3 cut(s)	74, 125, 211
HpaII	CCGG	1 cut(s)	217
HphI	GGTGA	1 cut(s)	284
Hpy188I	TCNGA	4 cut(s)	130, 150, 201, 361
HpyAV	CCTTC	2 cut(s)	109, 263
HpyCH4III	ACNGT	2 cut(s)	49, 382
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	2 cut(s)	191, 355
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 203
HpySE526I	ACGT	1 cut(s)	81
HspAI	GCGC	1 cut(s)	263
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	6 cut(s)	72, 177, 230, 251, 317, 357
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	2 cut(s)	85, 194
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	2 cut(s)	43, 376
MboII	GAAGA	3 cut(s)	137, 251, 329
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	2 cut(s)	322, 349
MlyI	GAGTC	2 cut(s)	68, 134
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	3 cut(s)	119, 150, 235
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	1 cut(s)	63
MspI	CCGG	1 cut(s)	217
MwoI	GCNNNNNNNGC	2 cut(s)	161, 203
NlaIV	GGNNCC	3 cut(s)	91, 228, 246
PaqCI	CACCTGC	1 cut(s)	182
PciSI	GCTCTTC	1 cut(s)	150
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	211
PkrI	GCNGC	1 cut(s)	142
PleI	GAGTC	2 cut(s)	68, 133
PpsI	GAGTC	2 cut(s)	68, 133
PshBI	ATTAAT	1 cut(s)	63
PspN4I	GGNNCC	3 cut(s)	91, 228, 246
PspPI	GGNCC	2 cut(s)	219, 341
PstI	CTGCAG	1 cut(s)	193
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	1 cut(s)	141
Sau96I	GGNCC	2 cut(s)	219, 341
SchI	GAGTC	2 cut(s)	68, 134
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	7 cut(s)	84, 142, 196, 246, 274, 336, 369
SfaNI	GCATC	2 cut(s)	85, 194
SfcI	CTRYAG	1 cut(s)	189
SinI	GGWCC	1 cut(s)	219
Sse9I	AATT	2 cut(s)	322, 349
SsiI	CCGC	1 cut(s)	117
SspMI	CTAG	1 cut(s)	14
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	2 cut(s)	49, 382
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	1 cut(s)	123
TasI	AATT	2 cut(s)	322, 349
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TseI	GCWGC	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	219
VspI	ATTAAT	1 cut(s)	63
XapI	RAATTY	1 cut(s)	349
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.