Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004557

Physical Location & Seq

Genomic Coordinates Forward (+)

41313841 .. 41317382

Gene Structure 3542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG296200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGACGTCCAACTCCAGCCCACGTCGCTCCTACTCCATCGGATCGTTCGACTACCTCGTCGACGACGACTCCGAGGTCAGATTGTCCAATGCCAGAAACGACTCATCTGATTGGAAAGAAGAGGTGATTGTTGTTCTCGGCGAGCTCCCTCTGCCGCTACCGTCGGAAGCCAATCTAGCCGCTGACATGGCCTCGGGAAGGAGCTGGCTTAAAGAATTCGTGCATAGACTCTCCAGCTCTCTACGAAGCTCCGGCAGATTCTTTACCGGCAATTTCGCTCGCCTCTACTCCGCCATCGAGTCCGACATTGAAGCTGCTCTTCAGAAAGCGGAGCTTGCTTCAAAAGAAAAAAGTATGGCATCTGCAGGTGCTCTGACTGCCAAGATTCGCCGGACCAAGGCTCCATTACTTGAAGAGGTTCCCAAGTTGCAGAGATTGGCTGTAAAGAAGCTAGCATATCTGCCTGATAAAAAACGGGAATATGTGATTGATGATGATGCTCTAAGTCATGCTTCCGAGCTTTCAGTGGAAGGAAGAGATGATATCACTAATCTTGATGAGTTGGTCAAGGATTACAAAAGAAACAGAAGACGTGGAATGCTCGGATGGCTTAAACTGAAAGTAAGTACTCATTTGTTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

214

Amino Acids

24.04

Weight (kDa)

8.69

Isoelectric Point (pI)

54.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004557)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027547
rosa_multiflora	Rmu_sc0002209.1_g000021
rosa_roxburghii	Rroxscaffold_1G00010960
rosa_samantha	Rh1BG400500 Rh1CG414900 Rh1DG430500 Rh2AG545000 Rh2BG114400 Rh2BG227500 Rh2BG319200 Rh2BG435500 Rh2BG517400 Rh2DG416300 Rh2DG529200 Rh2DG567300 Rh3AG319500 Rh4AG015800 Rh4BG264500 Rh5AG067300 Rh5AG083300 Rh5AG213200 Rh5AG296200 Rh5AG296600 Rh5CG075100 Rh5DG116300 Rh6CG098400 Rh6DG091800 Rh6DG376500 Rh7AG428900 Rh7CG242900 Rh7CG447800 Rh7DG200000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	356
AasI	GACNNNNNNGTC	2 cut(s)	56, 74
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	356
AccI	GTMKAC	1 cut(s)	60
AciI	CCGC	4 cut(s)	155, 180, 291, 329
AclWI	GGATC	1 cut(s)	49
AcsI	RAATTY	1 cut(s)	215
AcuI	CTGAAG	1 cut(s)	305
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	628
AfiI	CCNNNNNNNGG	2 cut(s)	198, 397
AgsI	TTSAA	3 cut(s)	311, 342, 413
AjiI	CACGTC	2 cut(s)	23, 593
AluBI	AGCT	8 cut(s)	145, 204, 237, 249, 314, 334, 451, 520
AluI	AGCT	8 cut(s)	145, 204, 237, 249, 314, 334, 451, 520
Alw21I	GWGCWC	2 cut(s)	147, 373
AlwI	GGATC	1 cut(s)	49
Ama87I	CYCGRG	1 cut(s)	193
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	1 cut(s)	215
Asp700I	GAANNNNTTC	1 cut(s)	417
AspS9I	GGNCC	1 cut(s)	393
AsuHPI	GGTGA	1 cut(s)	136
AsuNHI	GCTAGC	1 cut(s)	451
AvaI	CYCGRG	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	393
BanII	GRGCYC	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	595
Bbv12I	GWGCWC	2 cut(s)	147, 373
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	3 cut(s)	44, 302, 600
BfaI	CTAG	2 cut(s)	176, 452
BfmI	CTRYAG	1 cut(s)	363
BfuAI	ACCTGC	1 cut(s)	356
BisI	GCNGC	3 cut(s)	155, 180, 315
BlsI	GCNGC	3 cut(s)	156, 181, 316
BmcAI	AGTACT	1 cut(s)	628
Bme18I	GGWCC	1 cut(s)	393
BmeT110I	CYCGRG	1 cut(s)	193
BmgBI	CACGTC	2 cut(s)	23, 593
BmgT120I	GGNCC	1 cut(s)	393
BmiI	GGNNCC	2 cut(s)	402, 420
BmsI	GCATC	2 cut(s)	368, 487
BmtI	GCTAGC	1 cut(s)	455
BpiI	GAAGAC	1 cut(s)	595
BpmI	CTGGAG	1 cut(s)	217
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	72, 192, 396
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 385, 415
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 397
Bse118I	RCCGGY	1 cut(s)	266
BseDI	CCNNGG	3 cut(s)	72, 192, 396
BseGI	GGATG	1 cut(s)	611
BseLI	CCNNNNNNNGG	2 cut(s)	198, 397
BseXI	GCAGC	1 cut(s)	301
BshFI	GGCC	1 cut(s)	191
BsiHKAI	GWGCWC	2 cut(s)	147, 373
BsiHKCI	CYCGRG	1 cut(s)	193
BsiSI	CCGG	3 cut(s)	252, 267, 391
BslI	CCNNNNNNNGG	2 cut(s)	198, 397
BsmI	GAATGC	1 cut(s)	603
BsnI	GGCC	1 cut(s)	191
BsoBI	CYCGRG	1 cut(s)	193
Bsp1286I	GDGCHC	2 cut(s)	147, 373
Bsp143I	GATC	1 cut(s)	41
BspACI	CCGC	4 cut(s)	155, 180, 291, 329
BspANI	GGCC	1 cut(s)	191
BspLI	GGNNCC	2 cut(s)	402, 420
BspMAI	CTGCAG	1 cut(s)	367
BspMI	ACCTGC	1 cut(s)	356
BspOI	GCTAGC	1 cut(s)	455
BspPI	GGATC	1 cut(s)	49
BspQI	GCTCTTC	1 cut(s)	324
BsrFI	RCCGGY	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	3 cut(s)	72, 192, 396
BssMI	GATC	1 cut(s)	41
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	162
Bst6I	CTCTTC	4 cut(s)	114, 324, 408, 529
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	5 cut(s)	143, 206, 280, 336, 453
BstDEI	CTNAG	1 cut(s)	503
BstENI	CCTNNNNNAGG	1 cut(s)	196
BstF5I	GGATG	1 cut(s)	611
BstKTI	GATC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	7 cut(s)	24, 151, 176, 188, 335, 377, 607
BstSFI	CTRYAG	1 cut(s)	363
BstV1I	GCAGC	1 cut(s)	301
BstV2I	GAAGAC	1 cut(s)	595
BsuRI	GGCC	1 cut(s)	191
BtrI	CACGTC	2 cut(s)	23, 593
BtsCI	GGATG	1 cut(s)	611
BtsIMutI	CAGTG	1 cut(s)	531
BveI	ACCTGC	1 cut(s)	356
Cac8I	GCNNGC	5 cut(s)	143, 206, 280, 336, 453
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	393
Csp6I	GTAC	1 cut(s)	627
CviAII	CATG	2 cut(s)	187, 509
CviQI	GTAC	1 cut(s)	627
DdeI	CTNAG	1 cut(s)	503
DpnI	GATC	1 cut(s)	43
DpnII	GATC	1 cut(s)	41
DrdI	GACNNNNNNGTC	2 cut(s)	56, 74
DseDI	GACNNNNNNGTC	2 cut(s)	56, 74
Eam1104I	CTCTTC	4 cut(s)	114, 324, 408, 529
EarI	CTCTTC	4 cut(s)	114, 324, 408, 529
EciI	GGCGGA	1 cut(s)	280
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	147
Eco32I	GATATC	1 cut(s)	544
Eco47I	GGWCC	1 cut(s)	393
Eco53kI	GAGCTC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	305
Eco88I	CYCGRG	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	145
EcoNI	CCTNNNNNAGG	1 cut(s)	196
EcoRI	GAATTC	1 cut(s)	215
EcoRV	GATATC	1 cut(s)	544
EcoT14I	CCWWGG	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	2 cut(s)	190, 512
FaiI	YATR	6 cut(s)	188, 225, 356, 457, 483, 510
FalI	AAGNNNNNCTT	6 cut(s)	303, 335, 318, 350, 496, 528
FatI	CATG	2 cut(s)	186, 508
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	3 cut(s)	155, 180, 315
FokI	GGATG	1 cut(s)	618
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	3 cut(s)	155, 180, 315
FspBI	CTAG	2 cut(s)	176, 452
GluI	GCNGC	3 cut(s)	155, 180, 315
GsuI	CTGGAG	1 cut(s)	217
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	3 cut(s)	252, 267, 391
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	190, 512
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	6 cut(s)	68, 101, 228, 258, 299, 385
HpaII	CCGG	3 cut(s)	252, 267, 391
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188III	TCNNGA	2 cut(s)	195, 554
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	5 cut(s)	27, 62, 65, 68, 166
HpyAV	CCTTC	2 cut(s)	192, 524
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4IV	ACGT	3 cut(s)	5, 22, 592
HpyCH4V	TGCA	3 cut(s)	223, 365, 430
HpyF10VI	GCNNNNNNNGC	7 cut(s)	24, 151, 176, 188, 335, 377, 607
HpyF3I	CTNAG	1 cut(s)	503
HpySE526I	ACGT	3 cut(s)	5, 22, 592
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	190, 512
Kzo9I	GATC	1 cut(s)	41
LguI	GCTCTTC	1 cut(s)	324
LmnI	GCTCC	6 cut(s)	32, 150, 201, 254, 331, 406
LpnPI	CCDG	9 cut(s)	28, 106, 190, 247, 265, 280, 351, 404, 477
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	2 cut(s)	368, 487
MaeI	CTAG	2 cut(s)	176, 452
MaeII	ACGT	3 cut(s)	5, 22, 592
MalI	GATC	1 cut(s)	43
MboI	GATC	1 cut(s)	41
MboII	GAAGA	5 cut(s)	131, 311, 425, 546, 600
MhlI	GDGCHC	2 cut(s)	147, 373
MluCI	AATT	2 cut(s)	215, 271
MlyI	GAGTC	4 cut(s)	62, 95, 222, 308
MmeI	TCCRAC	3 cut(s)	33, 144, 327
MnlI	CCTC	7 cut(s)	65, 67, 115, 159, 202, 293, 409
MroXI	GAANNNNTTC	1 cut(s)	417
MseI	TTAA	2 cut(s)	210, 612
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	3 cut(s)	252, 267, 391
Mva1269I	GAATGC	1 cut(s)	603
MwoI	GCNNNNNNNGC	7 cut(s)	24, 151, 176, 188, 335, 377, 607
NdeII	GATC	1 cut(s)	41
NheI	GCTAGC	1 cut(s)	451
NlaIII	CATG	2 cut(s)	190, 512
NlaIV	GGNNCC	2 cut(s)	402, 420
NmeAIII	GCCGAG	1 cut(s)	117
PaqCI	CACCTGC	1 cut(s)	356
PciSI	GCTCTTC	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	4 cut(s)	45, 54, 63, 69
PctI	GAATGC	1 cut(s)	603
PdmI	GAANNNNTTC	1 cut(s)	417
PfeI	GAWTC	2 cut(s)	258, 385
PkrI	GCNGC	3 cut(s)	156, 181, 316
PleI	GAGTC	4 cut(s)	62, 95, 222, 307
PpsI	GAGTC	4 cut(s)	62, 95, 222, 307
Psp124BI	GAGCTC	1 cut(s)	147
PspN4I	GGNNCC	2 cut(s)	402, 420
PspPI	GGNCC	1 cut(s)	393
PstI	CTGCAG	1 cut(s)	367
RsaI	GTAC	1 cut(s)	628
RsaNI	GTAC	1 cut(s)	627
SacI	GAGCTC	1 cut(s)	147
SalI	GTCGAC	1 cut(s)	59
SapI	GCTCTTC	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	210, 612
SatI	GCNGC	3 cut(s)	155, 180, 315
Sau3AI	GATC	1 cut(s)	41
Sau96I	GGNCC	1 cut(s)	393
ScaI	AGTACT	1 cut(s)	628
SchI	GAGTC	4 cut(s)	62, 95, 222, 308
SduI	GDGCHC	2 cut(s)	147, 373
SfaNI	GCATC	2 cut(s)	368, 487
SfcI	CTRYAG	1 cut(s)	363
SgrDI	CGTCGACG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	393
Sse9I	AATT	2 cut(s)	215, 271
SsiI	CCGC	4 cut(s)	155, 180, 291, 329
SspMI	CTAG	2 cut(s)	176, 452
SstI	GAGCTC	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	162
TaiI	ACGT	3 cut(s)	8, 25, 595
TaqI	TCGA	3 cut(s)	48, 60, 297
TasI	AATT	2 cut(s)	215, 271
TatI	WGTACW	1 cut(s)	626
TauI	GCSGC	2 cut(s)	157, 182
TfiI	GAWTC	2 cut(s)	258, 385
Tru1I	TTAA	2 cut(s)	210, 612
Tru9I	TTAA	2 cut(s)	210, 612
TscAI	CASTG	1 cut(s)	531
TseI	GCWGC	1 cut(s)	314
TspRI	CASTG	1 cut(s)	531
VpaK11BI	GGWCC	1 cut(s)	393
XagI	CCTNNNNNAGG	1 cut(s)	196
XapI	RAATTY	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	417
XspI	CTAG	2 cut(s)	176, 452
ZraI	GACGTC	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.