Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004557

Physical Location & Seq

Genomic Coordinates Reverse (-)

22150688 .. 22151005

Gene Structure 318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG227500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGATCGCTTGGAGCGCATGACGTCCTCCTCGACGATATGCAAGGGAAGGACGACAGTGGGGTTGACCCGGAGGGCGATCTGCCAGGTTAGCAGGGAGGGGAAGAGCGAGGAAGCCGAGGAAGGCTTCCGGCGACTCCGGAGGAGGAGGGAAGGTGAACAAGTCCGGCAGATCGACGACGACCTTCCTCCTGGCTCTCTTGGTAGCCTCGTTCACAACCATGGTAGATCTGAGCTTTGTCGAAAAAACCATGGTAGATCTGAGAGCCTAGCTTCTGCAGATCATGAAGCGAAGGTCGGTGCTTCTGGGGTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

11.66

Weight (kDa)

9.41

Isoelectric Point (pI)

64.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004557)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027547
rosa_multiflora	Rmu_sc0002209.1_g000021
rosa_roxburghii	Rroxscaffold_1G00010960
rosa_samantha	Rh1BG400500 Rh1CG414900 Rh1DG430500 Rh2AG545000 Rh2BG114400 Rh2BG227500 Rh2BG319200 Rh2BG435500 Rh2BG517400 Rh2DG416300 Rh2DG529200 Rh2DG567300 Rh3AG319500 Rh4AG015800 Rh4BG264500 Rh5AG067300 Rh5AG083300 Rh5AG213200 Rh5AG296200 Rh5AG296600 Rh5CG075100 Rh5DG116300 Rh6CG098400 Rh6DG091800 Rh6DG376500 Rh7AG428900 Rh7CG242900 Rh7CG447800 Rh7DG200000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	26
AccIII	TCCGGA	1 cut(s)	138
AclWI	GGATC	1 cut(s)	12
AcyI	GRCGYC	1 cut(s)	23
AjnI	CCWGG	2 cut(s)	84, 190
AluBI	AGCT	2 cut(s)	235, 272
AluI	AGCT	2 cut(s)	235, 272
AlwI	GGATC	1 cut(s)	12
Aor13HI	TCCGGA	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	18
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	167
BciT130I	CCWGG	2 cut(s)	86, 192
BcnI	CCSGG	1 cut(s)	70
BfaI	CTAG	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	276
BglII	AGATCT	2 cut(s)	227, 257
Bme1390I	CCNGG	3 cut(s)	70, 86, 192
BmrFI	CCNGG	3 cut(s)	70, 86, 192
BpuMI	CCSGG	1 cut(s)	70
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	3 cut(s)	117, 220, 250
BsaWI	WCCGGW	1 cut(s)	138
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
BseAI	TCCGGA	1 cut(s)	138
BseBI	CCWGG	2 cut(s)	86, 192
BseDI	CCNNGG	3 cut(s)	117, 220, 250
BseMII	CTCAG	2 cut(s)	222, 252
BseRI	GAGGAG	3 cut(s)	19, 157, 160
BsiSI	CCGG	4 cut(s)	70, 130, 139, 166
Bsp13I	TCCGGA	1 cut(s)	138
Bsp143I	GATC	6 cut(s)	4, 78, 171, 227, 257, 280
Bsp19I	CCATGG	2 cut(s)	220, 250
BspCNI	CTCAG	2 cut(s)	223, 253
BspEI	TCCGGA	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	283
BspMAI	CTGCAG	1 cut(s)	280
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	98
BssECI	CCNNGG	3 cut(s)	117, 220, 250
BssMI	GATC	6 cut(s)	4, 78, 171, 227, 257, 280
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	2 cut(s)	220, 250
Bst2UI	CCWGG	2 cut(s)	86, 192
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	1 cut(s)	23
BstDEI	CTNAG	2 cut(s)	231, 261
BstDSI	CCRYGG	2 cut(s)	220, 250
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	6 cut(s)	7, 81, 174, 230, 260, 283
BstMBI	GATC	6 cut(s)	4, 78, 171, 227, 257, 280
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 90
BstNI	CCWGG	2 cut(s)	86, 192
BstSCI	CCNGG	3 cut(s)	68, 84, 190
BstSFI	CTRYAG	1 cut(s)	276
BstX2I	RGATCY	2 cut(s)	227, 257
BstYI	RGATCY	2 cut(s)	227, 257
BtgI	CCRYGG	2 cut(s)	220, 250
BtsIMutI	CAGTG	1 cut(s)	63
CciI	TCATGA	1 cut(s)	283
CfoI	GCGC	1 cut(s)	18
CviAII	CATG	4 cut(s)	19, 221, 251, 284
CviJI	RGCY	7 cut(s)	116, 126, 195, 207, 235, 267, 272
CviKI_1	RGCY	7 cut(s)	116, 126, 195, 207, 235, 267, 272
DdeI	CTNAG	2 cut(s)	231, 261
DpnI	GATC	6 cut(s)	6, 80, 173, 229, 259, 282
DpnII	GATC	6 cut(s)	4, 78, 171, 227, 257, 280
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco130I	CCWWGG	2 cut(s)	220, 250
EcoRII	CCWGG	2 cut(s)	84, 190
EcoT14I	CCWWGG	2 cut(s)	220, 250
ErhI	CCWWGG	2 cut(s)	220, 250
FaeI	CATG	4 cut(s)	22, 224, 254, 287
FaiI	YATR	5 cut(s)	20, 40, 222, 252, 285
FatI	CATG	4 cut(s)	18, 220, 250, 283
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	1 cut(s)	17
HapII	CCGG	4 cut(s)	70, 130, 139, 166
HhaI	GCGC	1 cut(s)	18
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	4 cut(s)	22, 224, 254, 287
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	1 cut(s)	135
HpaII	CCGG	4 cut(s)	70, 130, 139, 166
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	3 cut(s)	66, 158, 214
Hpy188I	TCNGA	2 cut(s)	232, 262
Hpy188III	TCNNGA	2 cut(s)	139, 284
Hpy8I	GTNNAC	3 cut(s)	66, 158, 214
Hpy99I	CGWCG	3 cut(s)	37, 179, 182
HpyAV	CCTTC	5 cut(s)	42, 116, 146, 194, 286
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	2 cut(s)	42, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 90
HpyF3I	CTNAG	2 cut(s)	231, 261
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	4 cut(s)	22, 224, 254, 287
HspAI	GCGC	1 cut(s)	16
Kpn2I	TCCGGA	1 cut(s)	138
Kzo9I	GATC	6 cut(s)	4, 78, 171, 227, 257, 280
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	1 cut(s)	23
MalI	GATC	6 cut(s)	6, 80, 173, 229, 259, 282
MboI	GATC	6 cut(s)	4, 78, 171, 227, 257, 280
MboII	GAAGA	1 cut(s)	115
MflI	RGATCY	2 cut(s)	227, 257
MluCI	AATT	1 cut(s)	313
MlyI	GAGTC	1 cut(s)	129
MroI	TCCGGA	1 cut(s)	138
MseI	TTAA	1 cut(s)	312
MslI	CAYNNNNRTG	1 cut(s)	219
MspI	CCGG	4 cut(s)	70, 130, 139, 166
MspR9I	CCNGG	3 cut(s)	70, 86, 192
MvaI	CCWGG	2 cut(s)	86, 192
MwoI	GCNNNNNNNGC	2 cut(s)	15, 90
NciI	CCSGG	1 cut(s)	70
NcoI	CCATGG	2 cut(s)	220, 250
NdeII	GATC	6 cut(s)	4, 78, 171, 227, 257, 280
NlaIII	CATG	4 cut(s)	22, 224, 254, 287
NmeAIII	GCCGAG	1 cut(s)	142
PagI	TCATGA	1 cut(s)	283
PciSI	GCTCTTC	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
Psp6I	CCWGG	2 cut(s)	84, 190
PspGI	CCWGG	2 cut(s)	84, 190
PstI	CTGCAG	1 cut(s)	280
PsuI	RGATCY	2 cut(s)	227, 257
RseI	CAYNNNNRTG	1 cut(s)	219
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	312
Sau3AI	GATC	6 cut(s)	4, 78, 171, 227, 257, 280
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	3 cut(s)	70, 86, 192
SetI	ASST	7 cut(s)	26, 90, 157, 186, 237, 274, 297
SfcI	CTRYAG	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	219
Sse9I	AATT	1 cut(s)	313
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	3 cut(s)	68, 84, 190
StyI	CCWWGG	2 cut(s)	220, 250
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	3 cut(s)	32, 174, 241
TasI	AATT	1 cut(s)	313
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	1 cut(s)	63
TspDTI	ATGAA	1 cut(s)	300
TspRI	CASTG	1 cut(s)	63
XspI	CTAG	1 cut(s)	269
ZraI	GACGTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.