Rh5AG296600
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
41333898 .. 41338942
5045 bp
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UTR
Exon/CDS
Intron
Rh5AG296600.1

Sequence Viewer

Length: 531 bp
ATGTGGGTTTTCTGTGGAGAGGTTTGTGGTGGAAAACAACAGCGTGAAGTGATTTCCCCAAACTCATTCAAGAATGTTTATGAATGTGCAATTAGGAATTTTGGGCTCCTCAATATGGAGAAAATCGATGACAAAGATTTCGCTCGCCTCTACTCCGCCATCGAGTCCGACATTGAAGCTGCTCTTCAGAAAGCGGAGCTTGCTTCAAAAGAAAAAAGTATGGCATCTGCAGGTGCTCTGACTGCCAAGATTCGCCGGACCAAGGCTCCATTGCTTGAAGAGGTTCCCAAGTTGCAGAGATTGGCTGTAAAGAAGCTAGCATATCTGCCTGATAAAAAACGGGAATATGTGATTGATGATGATGCTCTAAGTCATGCTTCCGAGCTTTCAGTGGAAGGAAGAGATGATATCACTAATCTTGATGAGTTGGTCAAGGATTACAAAAGAAACAGAAGACGTGGAATGCTCGGATGGCTTAAACTGAAATCCAAAGTTGGAGATAGGCTACACACATCAATGGATGTCAGTTAG

Protein Analysis

176

Amino Acids

19.95

Weight (kDa)

8.88

Isoelectric Point (pI)

37.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 221
Acc36I ACCTGC 1 cut(s) 221
AciI CCGC 2 cut(s) 156, 194
AcsI RAATTY 1 cut(s) 97
AcuI CTGAAG 1 cut(s) 170
AfiI CCNNNNNNNGG 2 cut(s) 115, 262
AgsI TTSAA 4 cut(s) 70, 176, 207, 278
AjiI CACGTC 1 cut(s) 458
AluBI AGCT 4 cut(s) 179, 199, 316, 385
AluI AGCT 4 cut(s) 179, 199, 316, 385
Alw21I GWGCWC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 179
ApoI RAATTY 1 cut(s) 97
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
Asp700I GAANNNNTTC 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 258
AsuNHI GCTAGC 1 cut(s) 316
AvaII GGWCC 1 cut(s) 258
BanII GRGCYC 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 460
Bbv12I GWGCWC 1 cut(s) 238
BbvI GCAGC 1 cut(s) 166
BccI CCATC 2 cut(s) 167, 465
BfaI CTAG 1 cut(s) 317
BfmI CTRYAG 1 cut(s) 228
BfuAI ACCTGC 1 cut(s) 221
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme18I GGWCC 1 cut(s) 258
BmgBI CACGTC 1 cut(s) 458
BmgT120I GGNCC 1 cut(s) 258
BmiI GGNNCC 3 cut(s) 107, 267, 285
BmsI GCATC 2 cut(s) 233, 352
BmtI GCTAGC 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 460
Bsa29I ATCGAT 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 261
BsaXI ACNNNNNCTCC 2 cut(s) 250, 280
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 262
Bse3DI GCAATG 1 cut(s) 269
BseCI ATCGAT 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 2 cut(s) 476, 526
BseLI CCNNNNNNNGG 2 cut(s) 115, 262
BseMI GCAATG 1 cut(s) 269
BseRI GAGGAG 1 cut(s) 98
BseXI GCAGC 1 cut(s) 166
BshVI ATCGAT 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 238
BsiSI CCGG 1 cut(s) 256
BslI CCNNNNNNNGG 2 cut(s) 115, 262
BsmI GAATGC 1 cut(s) 468
Bsp1286I GDGCHC 2 cut(s) 108, 238
BspACI CCGC 2 cut(s) 156, 194
BspDI ATCGAT 1 cut(s) 126
BspLI GGNNCC 3 cut(s) 107, 267, 285
BspMAI CTGCAG 1 cut(s) 232
BspMI ACCTGC 1 cut(s) 221
BspOI GCTAGC 1 cut(s) 320
BspQI GCTCTTC 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 261
BssT1I CCWWGG 1 cut(s) 261
Bst6I CTCTTC 3 cut(s) 189, 273, 394
BstC8I GCNNGC 3 cut(s) 145, 201, 318
BstDEI CTNAG 1 cut(s) 368
BstF5I GGATG 2 cut(s) 476, 526
BstMWI GCNNNNNNNGC 3 cut(s) 200, 242, 472
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 460
Bsu15I ATCGAT 1 cut(s) 126
BsuTUI ATCGAT 1 cut(s) 126
BtrI CACGTC 1 cut(s) 458
BtsCI GGATG 2 cut(s) 476, 526
BtsIMutI CAGTG 1 cut(s) 396
BveI ACCTGC 1 cut(s) 221
Cac8I GCNNGC 3 cut(s) 145, 201, 318
Cfr13I GGNCC 1 cut(s) 258
ClaI ATCGAT 1 cut(s) 126
CviAII CATG 1 cut(s) 374
CviJI RGCY 9 cut(s) 106, 179, 199, 266, 305, 316, 385, 475, 505
CviKI_1 RGCY 9 cut(s) 106, 179, 199, 266, 305, 316, 385, 475, 505
DdeI CTNAG 1 cut(s) 368
Eam1104I CTCTTC 3 cut(s) 189, 273, 394
EarI CTCTTC 3 cut(s) 189, 273, 394
EciI GGCGGA 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 261
Eco24I GRGCYC 1 cut(s) 108
Eco32I GATATC 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 170
EcoRV GATATC 1 cut(s) 409
EcoT14I CCWWGG 1 cut(s) 261
EcoT38I GRGCYC 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 1 cut(s) 377
FaiI YATR 6 cut(s) 81, 116, 221, 322, 348, 375
FalI AAGNNNNNCTT 6 cut(s) 168, 200, 183, 215, 361, 393
FatI CATG 1 cut(s) 373
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 1 cut(s) 483
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 317
GluI GCNGC 1 cut(s) 180
HapII CCGG 1 cut(s) 256
Hin1II CATG 1 cut(s) 377
HinfI GANTC 2 cut(s) 164, 250
HpaII CCGG 1 cut(s) 256
Hpy188I TCNGA 5 cut(s) 169, 189, 240, 382, 470
Hpy188III TCNNGA 2 cut(s) 70, 419
HpyAV CCTTC 1 cut(s) 389
HpyCH4IV ACGT 1 cut(s) 457
HpyCH4V TGCA 3 cut(s) 89, 230, 295
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 242, 472
HpyF3I CTNAG 1 cut(s) 368
HpySE526I ACGT 1 cut(s) 457
Hsp92II CATG 1 cut(s) 377
LguI GCTCTTC 1 cut(s) 189
LmnI GCTCC 3 cut(s) 111, 196, 271
LpnPI CCDG 3 cut(s) 216, 269, 342
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 2 cut(s) 233, 352
MaeI CTAG 1 cut(s) 317
MaeII ACGT 1 cut(s) 457
MboII GAAGA 4 cut(s) 176, 290, 411, 465
MhlI GDGCHC 2 cut(s) 108, 238
MluCI AATT 2 cut(s) 90, 97
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 2 cut(s) 192, 475
MnlI CCTC 4 cut(s) 13, 119, 158, 274
MroXI GAANNNNTTC 1 cut(s) 282
MseI TTAA 1 cut(s) 477
MslI CAYNNNNRTG 1 cut(s) 515
MspI CCGG 1 cut(s) 256
Mva1269I GAATGC 1 cut(s) 468
MwoI GCNNNNNNNGC 3 cut(s) 200, 242, 472
NheI GCTAGC 1 cut(s) 316
NlaIII CATG 1 cut(s) 377
NlaIV GGNNCC 3 cut(s) 107, 267, 285
PaqCI CACCTGC 1 cut(s) 221
PciSI GCTCTTC 1 cut(s) 189
PctI GAATGC 1 cut(s) 468
PdmI GAANNNNTTC 1 cut(s) 282
PfeI GAWTC 1 cut(s) 250
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
PspN4I GGNNCC 3 cut(s) 107, 267, 285
PspPI GGNCC 1 cut(s) 258
PstI CTGCAG 1 cut(s) 232
RseI CAYNNNNRTG 1 cut(s) 515
SapI GCTCTTC 1 cut(s) 189
SaqAI TTAA 1 cut(s) 477
SatI GCNGC 1 cut(s) 180
Sau96I GGNCC 1 cut(s) 258
SchI GAGTC 1 cut(s) 173
SduI GDGCHC 2 cut(s) 108, 238
SetI ASST 8 cut(s) 24, 181, 201, 235, 285, 318, 387, 460
SfaNI GCATC 2 cut(s) 233, 352
SfcI CTRYAG 1 cut(s) 228
SinI GGWCC 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 515
Sse9I AATT 2 cut(s) 90, 97
SsiI CCGC 2 cut(s) 156, 194
SspMI CTAG 1 cut(s) 317
StyI CCWWGG 1 cut(s) 261
TaiI ACGT 1 cut(s) 460
TaqI TCGA 2 cut(s) 126, 162
TasI AATT 2 cut(s) 90, 97
TfiI GAWTC 1 cut(s) 250
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TscAI CASTG 1 cut(s) 396
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 96
TspRI CASTG 1 cut(s) 396
VpaK11BI GGWCC 1 cut(s) 258
XapI RAATTY 1 cut(s) 97
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.