Belongs to the syntaxin family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000027547 |
| rosa_multiflora | Rmu_sc0002209.1_g000021 |
| rosa_roxburghii | Rroxscaffold_1G00010960 |
| rosa_samantha | Rh1BG400500 Rh1CG414900 Rh1DG430500 Rh2AG545000 Rh2BG114400 Rh2BG227500 Rh2BG319200 Rh2BG435500 Rh2BG517400 Rh2DG416300 Rh2DG529200 Rh2DG567300 Rh3AG319500 Rh4AG015800 Rh4BG264500 Rh5AG067300 Rh5AG083300 Rh5AG213200 Rh5AG296200 Rh5AG296600 Rh5CG075100 Rh5DG116300 Rh6CG098400 Rh6DG091800 Rh6DG376500 Rh7AG428900 Rh7CG242900 Rh7CG447800 Rh7DG200000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 368 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 266 |
| Acc36I | ACCTGC | 1 cut(s) | 368 |
| AccB1I | GGYRCC | 1 cut(s) | 275 |
| AciI | CCGC | 5 cut(s) | 9, 230, 303, 315, 341 |
| AclWI | GGATC | 1 cut(s) | 221 |
| AcuI | CTGAAG | 1 cut(s) | 317 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 409 |
| AflIII | ACRYGT | 1 cut(s) | 238 |
| AgsI | TTSAA | 7 cut(s) | 32, 55, 146, 208, 323, 354, 425 |
| AjiI | CACGTC | 1 cut(s) | 241 |
| AluBI | AGCT | 3 cut(s) | 35, 326, 346 |
| AluI | AGCT | 3 cut(s) | 35, 326, 346 |
| Alw21I | GWGCWC | 1 cut(s) | 385 |
| Alw26I | GTCTC | 1 cut(s) | 274 |
| AlwI | GGATC | 1 cut(s) | 221 |
| ApeKI | GCWGC | 1 cut(s) | 326 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 429 |
| AspS9I | GGNCC | 2 cut(s) | 196, 405 |
| AsuHPI | GGTGA | 1 cut(s) | 109 |
| AvaII | GGWCC | 2 cut(s) | 196, 405 |
| BanI | GGYRCC | 1 cut(s) | 275 |
| Bbv12I | GWGCWC | 1 cut(s) | 385 |
| BbvI | GCAGC | 1 cut(s) | 313 |
| BccI | CCATC | 1 cut(s) | 314 |
| BcoDI | GTCTC | 1 cut(s) | 274 |
| BfaI | CTAG | 1 cut(s) | 479 |
| BfmI | CTRYAG | 1 cut(s) | 375 |
| BfuAI | ACCTGC | 1 cut(s) | 368 |
| BisI | GCNGC | 1 cut(s) | 327 |
| BlsI | GCNGC | 1 cut(s) | 328 |
| Bme18I | GGWCC | 2 cut(s) | 196, 405 |
| BmgBI | CACGTC | 1 cut(s) | 241 |
| BmgT120I | GGNCC | 2 cut(s) | 196, 405 |
| BmiI | GGNNCC | 4 cut(s) | 198, 277, 414, 432 |
| BmsI | GCATC | 4 cut(s) | 201, 223, 271, 380 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 245, 277 |
| BsaBI | GATNNNNATC | 1 cut(s) | 225 |
| BsaJI | CCNNGG | 1 cut(s) | 408 |
| BsaWI | WCCGGW | 1 cut(s) | 272 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 397, 427 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 409 |
| Bse3DI | GCAATG | 1 cut(s) | 416 |
| Bse8I | GATNNNNATC | 1 cut(s) | 225 |
| BseDI | CCNNGG | 1 cut(s) | 408 |
| BseGI | GGATG | 1 cut(s) | 214 |
| BseJI | GATNNNNATC | 1 cut(s) | 225 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 409 |
| BseMI | GCAATG | 1 cut(s) | 416 |
| BseXI | GCAGC | 1 cut(s) | 313 |
| BshNI | GGYRCC | 1 cut(s) | 275 |
| BsiHKAI | GWGCWC | 1 cut(s) | 385 |
| BsiSI | CCGG | 2 cut(s) | 273, 403 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 409 |
| BsmAI | GTCTC | 1 cut(s) | 274 |
| Bsp1286I | GDGCHC | 1 cut(s) | 385 |
| Bsp143I | GATC | 1 cut(s) | 226 |
| BspACI | CCGC | 5 cut(s) | 9, 230, 303, 315, 341 |
| BspLI | GGNNCC | 4 cut(s) | 198, 277, 414, 432 |
| BspMAI | CTGCAG | 1 cut(s) | 379 |
| BspMI | ACCTGC | 1 cut(s) | 368 |
| BspPI | GGATC | 1 cut(s) | 221 |
| BspQI | GCTCTTC | 1 cut(s) | 336 |
| BspT107I | GGYRCC | 1 cut(s) | 275 |
| BsrDI | GCAATG | 1 cut(s) | 416 |
| BssECI | CCNNGG | 1 cut(s) | 408 |
| BssMI | GATC | 1 cut(s) | 226 |
| BssT1I | CCWWGG | 1 cut(s) | 408 |
| Bst6I | CTCTTC | 2 cut(s) | 336, 420 |
| BstC8I | GCNNGC | 2 cut(s) | 292, 348 |
| BstF5I | GGATG | 1 cut(s) | 214 |
| BstKTI | GATC | 1 cut(s) | 229 |
| BstMAI | GTCTC | 1 cut(s) | 274 |
| BstMBI | GATC | 1 cut(s) | 226 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 323, 347, 389 |
| BstSFI | CTRYAG | 1 cut(s) | 375 |
| BstV1I | GCAGC | 1 cut(s) | 313 |
| BtrI | CACGTC | 1 cut(s) | 241 |
| BtsCI | GGATG | 1 cut(s) | 214 |
| BveI | ACCTGC | 1 cut(s) | 368 |
| Cac8I | GCNNGC | 2 cut(s) | 292, 348 |
| Cfr13I | GGNCC | 2 cut(s) | 196, 405 |
| CviJI | RGCY | 6 cut(s) | 35, 326, 346, 402, 413, 452 |
| CviKI_1 | RGCY | 6 cut(s) | 35, 326, 346, 402, 413, 452 |
| DpnI | GATC | 1 cut(s) | 228 |
| DpnII | GATC | 1 cut(s) | 226 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 266 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 266 |
| Eam1104I | CTCTTC | 2 cut(s) | 336, 420 |
| EarI | CTCTTC | 2 cut(s) | 336, 420 |
| EciI | GGCGGA | 4 cut(s) | 24, 219, 292, 304 |
| Eco130I | CCWWGG | 1 cut(s) | 408 |
| Eco47I | GGWCC | 2 cut(s) | 196, 405 |
| Eco57I | CTGAAG | 1 cut(s) | 317 |
| EcoT14I | CCWWGG | 1 cut(s) | 408 |
| EcoT22I | ATGCAT | 1 cut(s) | 216 |
| ErhI | CCWWGG | 1 cut(s) | 408 |
| FaiI | YATR | 8 cut(s) | 42, 71, 95, 99, 368, 472, 474, 476 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 315, 347, 330, 362 |
| Fnu4HI | GCNGC | 1 cut(s) | 327 |
| FokI | GGATG | 1 cut(s) | 201 |
| Fsp4HI | GCNGC | 1 cut(s) | 327 |
| FspBI | CTAG | 1 cut(s) | 479 |
| GluI | GCNGC | 1 cut(s) | 327 |
| HapII | CCGG | 2 cut(s) | 273, 403 |
| HindIII | AAGCTT | 1 cut(s) | 33 |
| HinfI | GANTC | 2 cut(s) | 260, 311 |
| HpaII | CCGG | 2 cut(s) | 273, 403 |
| HphI | GGTGA | 1 cut(s) | 109 |
| Hpy166II | GTNNAC | 1 cut(s) | 196 |
| Hpy188I | TCNGA | 2 cut(s) | 336, 387 |
| Hpy188III | TCNNGA | 1 cut(s) | 218 |
| Hpy8I | GTNNAC | 1 cut(s) | 196 |
| Hpy99I | CGWCG | 1 cut(s) | 245 |
| HpyAV | CCTTC | 1 cut(s) | 295 |
| HpyCH4IV | ACGT | 1 cut(s) | 240 |
| HpyCH4V | TGCA | 5 cut(s) | 66, 214, 377, 442, 470 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 323, 347, 389 |
| HpySE526I | ACGT | 1 cut(s) | 240 |
| Kzo9I | GATC | 1 cut(s) | 226 |
| LguI | GCTCTTC | 1 cut(s) | 336 |
| LmnI | GCTCC | 2 cut(s) | 343, 418 |
| LpnPI | CCDG | 5 cut(s) | 213, 231, 286, 363, 416 |
| Lsp1109I | GCAGC | 1 cut(s) | 313 |
| LweI | GCATC | 4 cut(s) | 201, 223, 271, 380 |
| MaeI | CTAG | 1 cut(s) | 479 |
| MaeII | ACGT | 1 cut(s) | 240 |
| MalI | GATC | 1 cut(s) | 228 |
| MboI | GATC | 1 cut(s) | 226 |
| MboII | GAAGA | 3 cut(s) | 220, 323, 437 |
| MhlI | GDGCHC | 1 cut(s) | 385 |
| MluCI | AATT | 2 cut(s) | 90, 113 |
| MlyI | GAGTC | 2 cut(s) | 254, 320 |
| MnlI | CCTC | 3 cut(s) | 305, 421, 475 |
| Mph1103I | ATGCAT | 1 cut(s) | 216 |
| MroXI | GAANNNNTTC | 1 cut(s) | 429 |
| MspI | CCGG | 2 cut(s) | 273, 403 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 323, 347, 389 |
| NdeII | GATC | 1 cut(s) | 226 |
| NlaIV | GGNNCC | 4 cut(s) | 198, 277, 414, 432 |
| NsiI | ATGCAT | 1 cut(s) | 216 |
| PaqCI | CACCTGC | 1 cut(s) | 368 |
| PciSI | GCTCTTC | 1 cut(s) | 336 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 249 |
| PdmI | GAANNNNTTC | 1 cut(s) | 429 |
| PkrI | GCNGC | 1 cut(s) | 328 |
| PleI | GAGTC | 2 cut(s) | 254, 319 |
| PpsI | GAGTC | 2 cut(s) | 254, 319 |
| PspN4I | GGNNCC | 4 cut(s) | 198, 277, 414, 432 |
| PspPI | GGNCC | 2 cut(s) | 196, 405 |
| PstI | CTGCAG | 1 cut(s) | 379 |
| SapI | GCTCTTC | 1 cut(s) | 336 |
| SatI | GCNGC | 1 cut(s) | 327 |
| Sau3AI | GATC | 1 cut(s) | 226 |
| Sau96I | GGNCC | 2 cut(s) | 196, 405 |
| SchI | GAGTC | 2 cut(s) | 254, 320 |
| SduI | GDGCHC | 1 cut(s) | 385 |
| SetI | ASST | 8 cut(s) | 37, 49, 122, 243, 328, 348, 382, 432 |
| SfaNI | GCATC | 4 cut(s) | 201, 223, 271, 380 |
| SfcI | CTRYAG | 1 cut(s) | 375 |
| SinI | GGWCC | 2 cut(s) | 196, 405 |
| Sse9I | AATT | 2 cut(s) | 90, 113 |
| SsiI | CCGC | 5 cut(s) | 9, 230, 303, 315, 341 |
| SspMI | CTAG | 1 cut(s) | 479 |
| StyI | CCWWGG | 1 cut(s) | 408 |
| TaiI | ACGT | 1 cut(s) | 243 |
| TaqI | TCGA | 1 cut(s) | 309 |
| TasI | AATT | 2 cut(s) | 90, 113 |
| TseI | GCWGC | 1 cut(s) | 326 |
| TspDTI | ATGAA | 2 cut(s) | 17, 57 |
| VpaK11BI | GGWCC | 2 cut(s) | 196, 405 |
| XmnI | GAANNNNTTC | 1 cut(s) | 429 |
| XspI | CTAG | 1 cut(s) | 479 |
| Zsp2I | ATGCAT | 1 cut(s) | 216 |