Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004557

Physical Location & Seq

Genomic Coordinates Reverse (-)

58895368 .. 58895939

Gene Structure 572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG447800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGCCTTCGCCGCGATCTGCAACAAGTACGACCGATACGACATCTACAAGTAGAAAGACTAACGTCTCCGGTGCCGATGCCTTCGCTCGCCTCTACTCCGCCATCGAGTCCGACATTGAAGCTGCTCTTCAGAAAGCGGAGCTTGCTTCAAAAGAAAAAAGTATGGCATCTGCAGGTGCTCTGACTGCCAAGATTCGCCGGACCAAGGCTCCATTGCTTGAAGAGGTTCCCAAGTTGCAGAGATTGGCTGTAAAGAAGTCCTCTGCATATATGCTAGAACTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005215 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0008565 GO:0009506 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0090150 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

95

Amino Acids

10.14

Weight (kDa)

9.75

Isoelectric Point (pI)

58.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004557)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027547
rosa_multiflora	Rmu_sc0002209.1_g000021
rosa_roxburghii	Rroxscaffold_1G00010960
rosa_samantha	Rh1BG400500 Rh1CG414900 Rh1DG430500 Rh2AG545000 Rh2BG114400 Rh2BG227500 Rh2BG319200 Rh2BG435500 Rh2BG517400 Rh2DG416300 Rh2DG529200 Rh2DG567300 Rh3AG319500 Rh4AG015800 Rh4BG264500 Rh5AG067300 Rh5AG083300 Rh5AG213200 Rh5AG296200 Rh5AG296600 Rh5CG075100 Rh5DG116300 Rh6CG098400 Rh6DG091800 Rh6DG376500 Rh7AG428900 Rh7CG242900 Rh7CG447800 Rh7DG200000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	164
Acc36I	ACCTGC	1 cut(s)	164
AccB1I	GGYRCC	1 cut(s)	71
AccII	CGCG	1 cut(s)	13
AciI	CCGC	3 cut(s)	11, 99, 137
AcuI	CTGAAG	1 cut(s)	113
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	3 cut(s)	119, 150, 221
AluBI	AGCT	2 cut(s)	122, 142
AluI	AGCT	2 cut(s)	122, 142
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	1 cut(s)	70
ApeKI	GCWGC	1 cut(s)	122
Asp700I	GAANNNNTTC	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	201
AvaII	GGWCC	1 cut(s)	201
BanI	GGYRCC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	1 cut(s)	110
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	1 cut(s)	275
BfmI	CTRYAG	1 cut(s)	171
BfuAI	ACCTGC	1 cut(s)	164
BisI	GCNGC	2 cut(s)	11, 123
BlsI	GCNGC	2 cut(s)	12, 124
Bme18I	GGWCC	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	3 cut(s)	73, 210, 228
BmsI	GCATC	2 cut(s)	67, 176
BoxI	GACNNNNGTC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	204
BsaWI	WCCGGW	1 cut(s)	68
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse3DI	GCAATG	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMI	GCAATG	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	109
Bsh1236I	CGCG	1 cut(s)	13
Bsh1285I	CGRYCG	1 cut(s)	33
BshNI	GGYRCC	1 cut(s)	71
BsiEI	CGRYCG	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	2 cut(s)	69, 199
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	70
BsmBI	CGTCTC	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	14
BspACI	CCGC	3 cut(s)	11, 99, 137
BspFNI	CGCG	1 cut(s)	13
BspLI	GGNNCC	3 cut(s)	73, 210, 228
BspMAI	CTGCAG	1 cut(s)	175
BspMI	ACCTGC	1 cut(s)	164
BspQI	GCTCTTC	1 cut(s)	132
BspT107I	GGYRCC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	204
Bst6I	CTCTTC	2 cut(s)	132, 216
BstC8I	GCNNGC	2 cut(s)	88, 144
BstFNI	CGCG	1 cut(s)	13
BstKTI	GATC	1 cut(s)	17
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	1 cut(s)	14
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 143, 185
BstPAI	GACNNNNGTC	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	171
BstUI	CGCG	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	109
BveI	ACCTGC	1 cut(s)	164
Cac8I	GCNNGC	2 cut(s)	88, 144
Cfr13I	GGNCC	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	27
CviJI	RGCY	4 cut(s)	122, 142, 209, 248
CviKI_1	RGCY	4 cut(s)	122, 142, 209, 248
CviQI	GTAC	1 cut(s)	27
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
Eam1104I	CTCTTC	2 cut(s)	132, 216
EarI	CTCTTC	2 cut(s)	132, 216
EciI	GGCGGA	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	113
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
Esp3I	CGTCTC	1 cut(s)	70
FaiI	YATR	4 cut(s)	164, 268, 270, 272
FalI	AAGNNNNNCTT	4 cut(s)	111, 143, 126, 158
Fnu4HI	GCNGC	2 cut(s)	11, 123
Fsp4HI	GCNGC	2 cut(s)	11, 123
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	2 cut(s)	11, 123
HapII	CCGG	2 cut(s)	69, 199
HinfI	GANTC	2 cut(s)	107, 193
HpaII	CCGG	2 cut(s)	69, 199
Hpy188I	TCNGA	3 cut(s)	112, 132, 183
HpyAV	CCTTC	2 cut(s)	15, 91
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	4 cut(s)	20, 173, 238, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 143, 185
HpySE526I	ACGT	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	14
LguI	GCTCTTC	1 cut(s)	132
LmnI	GCTCC	2 cut(s)	139, 214
LpnPI	CCDG	3 cut(s)	82, 159, 212
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	2 cut(s)	67, 176
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	1 cut(s)	63
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	2 cut(s)	119, 233
MhlI	GDGCHC	1 cut(s)	181
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	3 cut(s)	101, 217, 271
MroXI	GAANNNNTTC	1 cut(s)	225
MspI	CCGG	2 cut(s)	69, 199
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	3 cut(s)	10, 143, 185
NdeII	GATC	1 cut(s)	14
NlaIV	GGNNCC	3 cut(s)	73, 210, 228
PaqCI	CACCTGC	1 cut(s)	164
PciSI	GCTCTTC	1 cut(s)	132
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	193
PkrI	GCNGC	2 cut(s)	12, 124
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PshAI	GACNNNNGTC	1 cut(s)	62
PspN4I	GGNNCC	3 cut(s)	73, 210, 228
PspPI	GGNCC	1 cut(s)	201
PstI	CTGCAG	1 cut(s)	175
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	132
SatI	GCNGC	2 cut(s)	11, 123
Sau3AI	GATC	1 cut(s)	14
Sau96I	GGNCC	1 cut(s)	201
SchI	GAGTC	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	5 cut(s)	66, 124, 144, 178, 228
SfaNI	GCATC	2 cut(s)	67, 176
SfcI	CTRYAG	1 cut(s)	171
SinI	GGWCC	1 cut(s)	201
SsiI	CCGC	3 cut(s)	11, 99, 137
SspMI	CTAG	1 cut(s)	275
StyI	CCWWGG	1 cut(s)	204
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	105
TaqII	GACCGA	1 cut(s)	47
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	193
TseI	GCWGC	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	201
XmnI	GAANNNNTTC	1 cut(s)	225
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.