Rh5AG067300

Belongs to the syntaxin family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
5652425 .. 5662076
9652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG067300.1

Sequence Viewer

Length: 255 bp
ATGTTGGGGTTGTTGAAGAAAGACTCTAATGTCTCCGGTGCCGATGCCTTCGCTCGCCTCTACTCCGCCATCGAGTCCGCCATTGAAGCTGCTCTTCAGAAAGCGGAGCTTGCTTCAAAAGAAAAAAGTATGGCATCTGCAGGTGCTCTGATTGCCAAGATTAGCCGGACCAAGGCTCCATTGCTTGAAGAGGTTCCCAAGTTGCAGAGATTGGCTGTAAAGAAGTCCTCTGCATATATGCTAGAACTTGTTTAG

Protein Analysis

84

Amino Acids

8.93

Weight (kDa)

9.52

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 131
AasI GACNNNNNNGTC 1 cut(s) 29
Acc36I ACCTGC 1 cut(s) 131
AccB1I GGYRCC 1 cut(s) 38
AciI CCGC 3 cut(s) 66, 78, 104
AcuI CTGAAG 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 4 cut(s) 16, 86, 117, 188
AluBI AGCT 2 cut(s) 89, 109
AluI AGCT 2 cut(s) 89, 109
Alw21I GWGCWC 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 89
Asp700I GAANNNNTTC 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 168
AvaII GGWCC 1 cut(s) 168
BanI GGYRCC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 76
BccI CCATC 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 1 cut(s) 242
BfmI CTRYAG 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 131
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 3 cut(s) 40, 177, 195
BmsI GCATC 2 cut(s) 34, 143
BsaJI CCNNGG 1 cut(s) 171
BsaWI WCCGGW 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse3DI GCAATG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMI GCAATG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 76
BshNI GGYRCC 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 148
BsiSI CCGG 2 cut(s) 36, 166
BslI CCNNNNNNNGG 1 cut(s) 172
BsmAI GTCTC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 148
BspACI CCGC 3 cut(s) 66, 78, 104
BspLI GGNNCC 3 cut(s) 40, 177, 195
BspMAI CTGCAG 1 cut(s) 142
BspMI ACCTGC 1 cut(s) 131
BspQI GCTCTTC 1 cut(s) 99
BspT107I GGYRCC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 171
BssT1I CCWWGG 1 cut(s) 171
Bst6I CTCTTC 2 cut(s) 99, 183
BstC8I GCNNGC 2 cut(s) 55, 111
BstMAI GTCTC 1 cut(s) 37
BstMWI GCNNNNNNNGC 3 cut(s) 86, 110, 152
BstSFI CTRYAG 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 76
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 2 cut(s) 55, 111
Cfr13I GGNCC 1 cut(s) 168
CviJI RGCY 5 cut(s) 89, 109, 165, 176, 215
CviKI_1 RGCY 5 cut(s) 89, 109, 165, 176, 215
DrdI GACNNNNNNGTC 1 cut(s) 29
DseDI GACNNNNNNGTC 1 cut(s) 29
Eam1104I CTCTTC 2 cut(s) 99, 183
EarI CTCTTC 2 cut(s) 99, 183
EciI GGCGGA 2 cut(s) 55, 67
Eco130I CCWWGG 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 80
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
FaiI YATR 4 cut(s) 131, 235, 237, 239
FalI AAGNNNNNCTT 4 cut(s) 78, 110, 93, 125
Fnu4HI GCNGC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 242
GluI GCNGC 1 cut(s) 90
HapII CCGG 2 cut(s) 36, 166
HinfI GANTC 2 cut(s) 23, 74
HpaII CCGG 2 cut(s) 36, 166
Hpy188I TCNGA 2 cut(s) 99, 150
HpyAV CCTTC 1 cut(s) 58
HpyCH4V TGCA 3 cut(s) 140, 205, 233
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 110, 152
LguI GCTCTTC 1 cut(s) 99
LmnI GCTCC 2 cut(s) 106, 181
LpnPI CCDG 3 cut(s) 49, 126, 179
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 2 cut(s) 34, 143
MaeI CTAG 1 cut(s) 242
MboII GAAGA 3 cut(s) 28, 86, 200
MhlI GDGCHC 1 cut(s) 148
MlyI GAGTC 2 cut(s) 17, 83
MnlI CCTC 3 cut(s) 68, 184, 238
MroXI GAANNNNTTC 1 cut(s) 192
MspI CCGG 2 cut(s) 36, 166
MwoI GCNNNNNNNGC 3 cut(s) 86, 110, 152
NlaIV GGNNCC 3 cut(s) 40, 177, 195
PaqCI CACCTGC 1 cut(s) 131
PciSI GCTCTTC 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 192
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 2 cut(s) 17, 82
PpsI GAGTC 2 cut(s) 17, 82
PspN4I GGNNCC 3 cut(s) 40, 177, 195
PspPI GGNCC 1 cut(s) 168
PstI CTGCAG 1 cut(s) 142
SapI GCTCTTC 1 cut(s) 99
SatI GCNGC 1 cut(s) 90
Sau96I GGNCC 1 cut(s) 168
SchI GAGTC 2 cut(s) 17, 83
SduI GDGCHC 1 cut(s) 148
SetI ASST 4 cut(s) 91, 111, 145, 195
SfaNI GCATC 2 cut(s) 34, 143
SfcI CTRYAG 1 cut(s) 138
SinI GGWCC 1 cut(s) 168
SsiI CCGC 3 cut(s) 66, 78, 104
SspMI CTAG 1 cut(s) 242
StyI CCWWGG 1 cut(s) 171
TaqI TCGA 1 cut(s) 72
TseI GCWGC 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 168
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.