Rh2DG567300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004557
Physical Location & Seq
Reverse (-)
79632028 .. 79634880
2853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG567300.1

Sequence Viewer

Length: 405 bp
ATGACGTCCTCCTCGACGATATCCAAGGGAAGGACGACGGCGGGGTCGACCCGGAGGGCGATCTGCCAAGTCAGCAGGGAGGGGAAGAGCGAGGAAGCCGAGGAAGGCTTCCAGCGACTCCGAAGGAGGAGGAAAGGTGAACAGGTCGGGCAGATCGGCGGCGACCTTCCTCCTGTCTCTCTTGGTAGCCTCGTTCACAACCATGGTAGATCTGAGAGCCTAGCTTCTGCAGATCATGAAGCGAAGACCACTTCTGTGGCACCAAACAGTGGTTTCCCGGCAGCAAATCACTCCAAAATCGATCAGATCTGTAGCGCGTTTCCAGTCCAGGGCTTTTCAAGAACTCCAACGAAGAAGATCATAGATACTGGTTACTGCAGCTTACAAGGATATACTTGGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.39

Weight (kDa)

9.6

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 43
AatII GACGTC 1 cut(s) 8
AccB1I GGYRCC 1 cut(s) 259
AccB7I CCANNNNNTGG 1 cut(s) 269
AccI GTMKAC 1 cut(s) 47
AccII CGCG 1 cut(s) 317
AciI CCGC 2 cut(s) 41, 159
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 3 cut(s) 30, 269, 329
AgsI TTSAA 1 cut(s) 339
AjnI CCWGG 1 cut(s) 327
AleI CACNNNNGTG 1 cut(s) 254
AluBI AGCT 2 cut(s) 224, 381
AluI AGCT 2 cut(s) 224, 381
Alw26I GTCTC 1 cut(s) 181
ApeKI GCWGC 2 cut(s) 281, 378
AspLEI GCGC 1 cut(s) 317
AsuC2I CCSGG 2 cut(s) 52, 278
AsuHPI GGTGA 1 cut(s) 149
BanI GGYRCC 1 cut(s) 259
BbsI GAAGAC 1 cut(s) 251
BbvI GCAGC 2 cut(s) 293, 390
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 329
BcnI CCSGG 2 cut(s) 52, 278
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 1 cut(s) 221
BfmI CTRYAG 3 cut(s) 228, 310, 376
BglII AGATCT 2 cut(s) 209, 306
BisI GCNGC 3 cut(s) 160, 282, 379
BlsI GCNGC 3 cut(s) 161, 283, 380
Bme1390I CCNGG 3 cut(s) 52, 278, 329
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 3 cut(s) 52, 278, 329
BpiI GAAGAC 1 cut(s) 251
BpuMI CCSGG 2 cut(s) 52, 278
Bsa29I ATCGAT 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 24, 99, 202, 328
BsaXI ACNNNNNCTCC 2 cut(s) 121, 151
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 269, 329
Bse1I ACTGG 2 cut(s) 323, 373
BseBI CCWGG 1 cut(s) 329
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 4 cut(s) 24, 99, 202, 328
BseLI CCNNNNNNNGG 3 cut(s) 30, 269, 329
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 2 cut(s) 323, 373
BseRI GAGGAG 1 cut(s) 142
BseXI GCAGC 2 cut(s) 293, 390
Bsh1236I CGCG 1 cut(s) 317
BshNI GGYRCC 1 cut(s) 259
BshVI ATCGAT 1 cut(s) 300
BsiSI CCGG 2 cut(s) 52, 278
BslI CCNNNNNNNGG 3 cut(s) 30, 269, 329
BsmAI GTCTC 1 cut(s) 181
Bsp143I GATC 7 cut(s) 60, 153, 209, 232, 301, 306, 357
Bsp19I CCATGG 1 cut(s) 202
BspACI CCGC 2 cut(s) 41, 159
BspCNI CTCAG 1 cut(s) 205
BspDI ATCGAT 1 cut(s) 300
BspFNI CGCG 1 cut(s) 317
BspHI TCATGA 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 261
BspMAI CTGCAG 2 cut(s) 232, 380
BspQI GCTCTTC 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 259
BsrI ACTGG 2 cut(s) 323, 373
BssECI CCNNGG 4 cut(s) 24, 99, 202, 328
BssMI GATC 7 cut(s) 60, 153, 209, 232, 301, 306, 357
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 24, 202
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 1 cut(s) 80
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 1 cut(s) 213
BstDSI CCRYGG 1 cut(s) 202
BstFNI CGCG 1 cut(s) 317
BstHHI GCGC 1 cut(s) 317
BstKTI GATC 7 cut(s) 63, 156, 212, 235, 304, 309, 360
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 7 cut(s) 60, 153, 209, 232, 301, 306, 357
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstNI CCWGG 1 cut(s) 329
BstSCI CCNGG 3 cut(s) 50, 276, 327
BstSFI CTRYAG 3 cut(s) 228, 310, 376
BstUI CGCG 1 cut(s) 317
BstV1I GCAGC 2 cut(s) 293, 390
BstV2I GAAGAC 1 cut(s) 251
BstX2I RGATCY 2 cut(s) 209, 306
BstXI CCANNNNNNTGG 1 cut(s) 256
BstYI RGATCY 2 cut(s) 209, 306
Bsu15I ATCGAT 1 cut(s) 300
BsuTUI ATCGAT 1 cut(s) 300
BtgI CCRYGG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 274
CciI TCATGA 1 cut(s) 235
CfoI GCGC 1 cut(s) 317
ClaI ATCGAT 1 cut(s) 300
CviAII CATG 2 cut(s) 203, 236
CviJI RGCY 7 cut(s) 98, 108, 189, 219, 224, 333, 381
CviKI_1 RGCY 7 cut(s) 98, 108, 189, 219, 224, 333, 381
DdeI CTNAG 1 cut(s) 213
DpnI GATC 7 cut(s) 62, 155, 211, 234, 303, 308, 359
DpnII GATC 7 cut(s) 60, 153, 209, 232, 301, 306, 357
DrdI GACNNNNNNGTC 1 cut(s) 43
DseDI GACNNNNNNGTC 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
Eco130I CCWWGG 2 cut(s) 24, 202
Eco32I GATATC 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 327
EcoRV GATATC 1 cut(s) 21
EcoT14I CCWWGG 2 cut(s) 24, 202
ErhI CCWWGG 2 cut(s) 24, 202
FaeI CATG 2 cut(s) 206, 239
FaiI YATR 4 cut(s) 204, 237, 362, 393
FatI CATG 2 cut(s) 202, 235
FauI CCCGC 1 cut(s) 34
FblI GTMKAC 1 cut(s) 47
Fnu4HI GCNGC 3 cut(s) 160, 282, 379
Fsp4HI GCNGC 3 cut(s) 160, 282, 379
FspBI CTAG 1 cut(s) 221
GlaI GCGC 1 cut(s) 316
GluI GCNGC 3 cut(s) 160, 282, 379
HapII CCGG 2 cut(s) 52, 278
HhaI GCGC 1 cut(s) 317
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 206, 239
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HinfI GANTC 1 cut(s) 117
HpaII CCGG 2 cut(s) 52, 278
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 3 cut(s) 48, 140, 196
Hpy188I TCNGA 3 cut(s) 122, 214, 306
Hpy188III TCNNGA 2 cut(s) 236, 339
Hpy8I GTNNAC 3 cut(s) 48, 140, 196
Hpy99I CGWCG 2 cut(s) 19, 40
HpyAV CCTTC 4 cut(s) 24, 98, 117, 176
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 2 cut(s) 230, 378
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 206, 239
HspAI GCGC 1 cut(s) 315
Kzo9I GATC 7 cut(s) 60, 153, 209, 232, 301, 306, 357
LguI GCTCTTC 1 cut(s) 80
Lsp1109I GCAGC 2 cut(s) 293, 390
MaeI CTAG 1 cut(s) 221
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 1 cut(s) 371
MalI GATC 7 cut(s) 62, 155, 211, 234, 303, 308, 359
MboI GATC 7 cut(s) 60, 153, 209, 232, 301, 306, 357
MboII GAAGA 4 cut(s) 97, 256, 364, 367
MflI RGATCY 2 cut(s) 209, 306
MlyI GAGTC 1 cut(s) 111
MmeI TCCRAC 1 cut(s) 371
MslI CAYNNNNRTG 2 cut(s) 201, 254
MspI CCGG 2 cut(s) 52, 278
MspR9I CCNGG 3 cut(s) 52, 278, 329
MvaI CCWGG 1 cut(s) 329
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 1 cut(s) 72
NciI CCSGG 2 cut(s) 52, 278
NcoI CCATGG 1 cut(s) 202
NdeII GATC 7 cut(s) 60, 153, 209, 232, 301, 306, 357
NlaIII CATG 2 cut(s) 206, 239
NlaIV GGNNCC 1 cut(s) 261
NmeAIII GCCGAG 1 cut(s) 124
OliI CACNNNNGTG 1 cut(s) 254
PagI TCATGA 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 80
PcsI WCGNNNNNNNCGW 2 cut(s) 11, 44
PflMI CCANNNNNTGG 1 cut(s) 269
PkrI GCNGC 3 cut(s) 161, 283, 380
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 327
PspGI CCWGG 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 261
PstI CTGCAG 2 cut(s) 232, 380
PsuI RGATCY 2 cut(s) 209, 306
RseI CAYNNNNRTG 2 cut(s) 201, 254
SalI GTCGAC 1 cut(s) 46
SapI GCTCTTC 1 cut(s) 80
SatI GCNGC 3 cut(s) 160, 282, 379
Sau3AI GATC 7 cut(s) 60, 153, 209, 232, 301, 306, 357
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 3 cut(s) 52, 278, 329
SetI ASST 6 cut(s) 8, 139, 147, 168, 226, 383
SfcI CTRYAG 3 cut(s) 228, 310, 376
SmiMI CAYNNNNRTG 2 cut(s) 201, 254
SsiI CCGC 2 cut(s) 41, 159
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 3 cut(s) 50, 276, 327
StyI CCWWGG 2 cut(s) 24, 202
TaaI ACNGT 1 cut(s) 269
TaiI ACGT 1 cut(s) 8
TaqI TCGA 3 cut(s) 14, 47, 300
TauI GCSGC 1 cut(s) 162
TscAI CASTG 1 cut(s) 274
TseI GCWGC 2 cut(s) 281, 378
TspDTI ATGAA 1 cut(s) 252
TspRI CASTG 1 cut(s) 274
Van91I CCANNNNNTGG 1 cut(s) 269
XmiI GTMKAC 1 cut(s) 47
XspI CTAG 1 cut(s) 221
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.