Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004557

Physical Location & Seq

Genomic Coordinates Forward (+)

43834555 .. 43839767

Gene Structure 5213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG264500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAGTGGGAGACCTAGTAAAGACTCTAACATCTCCGGTGCCGATGCCTTCGCTCGCCTCTACTCCGCCATCGAGTCCGACATTGAAGCTGCTCTTCAGAAAGCAGAGCTTGCTTCAAAAGAAAAAAGTATGGCATCTGCAGGTGCTCTGACTGCCAAGATTCGCCGGACCAAGGTTCCATTGCTTGAAGAGGTTCCCAAGTTGCAGAGATTGGCTGTAAAGAAGGTCGTTGGCCTCCACTGTTTGAATCAATTCTATTTCCGTGCTTCTTCAGAATTCTTGGCAGTGAATACTAGTAATGAGTCGTCCACAGGTCCCGCACCGACCTTTCTTCCATTTTGGAAATCCTTTCCAGATGATTTCGCCGAAGGGTTCTCAAATGACTCCGAACCTTTCTGCACTGCTGAACACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005215 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0008565 GO:0009506 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0090150 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

138

Amino Acids

15.07

Weight (kDa)

6.12

Isoelectric Point (pI)

58.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004557)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027547
rosa_multiflora	Rmu_sc0002209.1_g000021
rosa_roxburghii	Rroxscaffold_1G00010960
rosa_samantha	Rh1BG400500 Rh1CG414900 Rh1DG430500 Rh2AG545000 Rh2BG114400 Rh2BG227500 Rh2BG319200 Rh2BG435500 Rh2BG517400 Rh2DG416300 Rh2DG529200 Rh2DG567300 Rh3AG319500 Rh4AG015800 Rh4BG264500 Rh5AG067300 Rh5AG083300 Rh5AG213200 Rh5AG296200 Rh5AG296600 Rh5CG075100 Rh5DG116300 Rh6CG098400 Rh6DG091800 Rh6DG376500 Rh7AG428900 Rh7CG242900 Rh7CG447800 Rh7DG200000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	131
AccB1I	GGYRCC	1 cut(s)	38
AciI	CCGC	2 cut(s)	66, 318
AcsI	RAATTY	1 cut(s)	275
AcuI	CTGAAG	2 cut(s)	80, 255
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	4 cut(s)	86, 117, 188, 247
AhlI	ACTAGT	1 cut(s)	293
AluBI	AGCT	2 cut(s)	89, 109
AluI	AGCT	2 cut(s)	89, 109
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	4
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	275
Asp700I	GAANNNNTTC	2 cut(s)	192, 251
AspS9I	GGNCC	2 cut(s)	168, 314
AvaII	GGWCC	2 cut(s)	168, 314
BanI	GGYRCC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	4
BcuI	ACTAGT	1 cut(s)	293
BfaI	CTAG	2 cut(s)	15, 294
BfmI	CTRYAG	1 cut(s)	138
BfuAI	ACCTGC	1 cut(s)	131
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme18I	GGWCC	2 cut(s)	168, 314
BmgT120I	GGNCC	2 cut(s)	168, 314
BmiI	GGNNCC	4 cut(s)	40, 177, 195, 316
BmsI	GCATC	2 cut(s)	34, 143
BsaI	GGTCTC	1 cut(s)	4
BsaJI	CCNNGG	1 cut(s)	171
BsaWI	WCCGGW	1 cut(s)	35
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	76
BsgI	GTGCAG	1 cut(s)	382
BshFI	GGCC	1 cut(s)	234
BshNI	GGYRCC	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	2 cut(s)	36, 166
BslFI	GGGAC	1 cut(s)	300
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	4
BsmFI	GGGAC	1 cut(s)	300
BsnI	GGCC	1 cut(s)	234
Bso31I	GGTCTC	1 cut(s)	4
Bsp1286I	GDGCHC	1 cut(s)	148
BspACI	CCGC	2 cut(s)	66, 318
BspANI	GGCC	1 cut(s)	234
BspLI	GGNNCC	4 cut(s)	40, 177, 195, 316
BspMAI	CTGCAG	1 cut(s)	142
BspMI	ACCTGC	1 cut(s)	131
BspQI	GCTCTTC	1 cut(s)	99
BspT107I	GGYRCC	1 cut(s)	38
BspTNI	GGTCTC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	242
Bst6I	CTCTTC	2 cut(s)	99, 183
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstC8I	GCNNGC	2 cut(s)	55, 111
BstMAI	GTCTC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 152
BstSFI	CTRYAG	1 cut(s)	138
BstV1I	GCAGC	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	234
BtsI	GCAGTG	2 cut(s)	291, 399
BtsIMutI	CAGTG	3 cut(s)	238, 291, 399
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	2 cut(s)	55, 111
Cfr13I	GGNCC	2 cut(s)	168, 314
CviJI	RGCY	4 cut(s)	89, 109, 215, 234
CviKI_1	RGCY	4 cut(s)	89, 109, 215, 234
Eam1104I	CTCTTC	2 cut(s)	99, 183
EarI	CTCTTC	2 cut(s)	99, 183
EciI	GGCGGA	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	171
Eco31I	GGTCTC	1 cut(s)	4
Eco47I	GGWCC	2 cut(s)	168, 314
Eco57I	CTGAAG	2 cut(s)	80, 255
EcoO109I	RGGNCCY	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	171
FaiI	YATR	1 cut(s)	131
FalI	AAGNNNNNCTT	4 cut(s)	78, 110, 93, 125
FaqI	GGGAC	1 cut(s)	300
FauI	CCCGC	1 cut(s)	325
Fnu4HI	GCNGC	1 cut(s)	90
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	2 cut(s)	15, 294
GluI	GCNGC	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	2 cut(s)	36, 166
HinfI	GANTC	6 cut(s)	23, 74, 160, 247, 302, 383
HpaII	CCGG	2 cut(s)	36, 166
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	5 cut(s)	79, 99, 150, 274, 388
Hpy188III	TCNNGA	1 cut(s)	353
Hpy8I	GTNNAC	1 cut(s)	309
HpyAV	CCTTC	3 cut(s)	58, 217, 362
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4V	TGCA	3 cut(s)	140, 205, 399
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 152
LguI	GCTCTTC	1 cut(s)	99
LpnPI	CCDG	5 cut(s)	49, 126, 179, 297, 366
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	2 cut(s)	34, 143
MaeI	CTAG	2 cut(s)	15, 294
MboII	GAAGA	4 cut(s)	86, 200, 261, 323
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	2 cut(s)	251, 275
MlyI	GAGTC	4 cut(s)	17, 83, 311, 377
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	3 cut(s)	68, 184, 245
MroXI	GAANNNNTTC	2 cut(s)	192, 251
MspI	CCGG	2 cut(s)	36, 166
MwoI	GCNNNNNNNGC	2 cut(s)	110, 152
NlaIV	GGNNCC	4 cut(s)	40, 177, 195, 316
PaqCI	CACCTGC	1 cut(s)	131
PciSI	GCTCTTC	1 cut(s)	99
PdmI	GAANNNNTTC	2 cut(s)	192, 251
PfeI	GAWTC	2 cut(s)	160, 247
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	4 cut(s)	17, 82, 310, 377
PpsI	GAGTC	4 cut(s)	17, 82, 310, 377
PpuMI	RGGWCCY	1 cut(s)	314
Psp5II	RGGWCCY	1 cut(s)	314
PspN4I	GGNNCC	4 cut(s)	40, 177, 195, 316
PspPI	GGNCC	2 cut(s)	168, 314
PspPPI	RGGWCCY	1 cut(s)	314
PstI	CTGCAG	1 cut(s)	142
SapI	GCTCTTC	1 cut(s)	99
SatI	GCNGC	1 cut(s)	90
Sau96I	GGNCC	2 cut(s)	168, 314
SchI	GAGTC	4 cut(s)	17, 83, 311, 377
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	2 cut(s)	34, 143
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	2 cut(s)	168, 314
SpeI	ACTAGT	1 cut(s)	293
Sse9I	AATT	2 cut(s)	251, 275
SsiI	CCGC	2 cut(s)	66, 318
SspMI	CTAG	2 cut(s)	15, 294
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	242
TaqI	TCGA	1 cut(s)	72
TasI	AATT	2 cut(s)	251, 275
TfiI	GAWTC	2 cut(s)	160, 247
TscAI	CASTG	3 cut(s)	245, 291, 406
TseI	GCWGC	1 cut(s)	89
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	3 cut(s)	245, 291, 406
VpaK11BI	GGWCC	2 cut(s)	168, 314
XapI	RAATTY	1 cut(s)	275
XmnI	GAANNNNTTC	2 cut(s)	192, 251
XspI	CTAG	2 cut(s)	15, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.