AT1G15772

mediator of RNA polymerase II transcription subunit

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
5428520 .. 5429594
1075 bp
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UTR
Exon/CDS
Intron
AT1G15772.2

Sequence Viewer

Length: 357 bp
ATGGAAAATGAAAATGGAGATGATTGGCGGGAGGAGGTTTTCCAAAAGCTTAGATCCATGAGAGAGCGTTATCTACCACATGTGACTGATGTTTACCAGAGACTTGCAGACAAGTTGAACCATGAGGAATCGCTTCCGCAGCAACAAAGATCAAAGCACTTTGACAAGTTCCAAAGCATGAAGACAAACATAGAGCAATTGATCCAAGTCCTATCTCTTCGAAAGAGAAATATCATGCCGATATTAAAGGATTGTAGATGGGACTATTATGAGAAACGGATTATATATTTCTTAATTACGCTAAGAACCGGCTGGGAAGACAGTACAGCAAAGGCAGCTTCAAGATCAGTCTCATAA

Protein Analysis

118

Amino Acids

14.37

Weight (kDa)

9.07

Isoelectric Point (pI)

70.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 28, 137
AclWI GGATC 2 cut(s) 48, 196
AfaI GTAC 1 cut(s) 325
AflIII ACRYGT 1 cut(s) 79
AgsI TTSAA 2 cut(s) 118, 342
AluBI AGCT 2 cut(s) 49, 338
AluI AGCT 2 cut(s) 49, 338
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 2 cut(s) 48, 196
ApeKI GCWGC 2 cut(s) 139, 335
Asp700I GAANNNNTTC 1 cut(s) 132
AsuII TTCGAA 1 cut(s) 220
BbsI GAAGAC 2 cut(s) 188, 324
BbvI GCAGC 2 cut(s) 151, 347
BccI CCATC 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 94
BisI GCNGC 2 cut(s) 140, 336
BlsI GCNGC 2 cut(s) 141, 337
BpiI GAAGAC 2 cut(s) 188, 324
Bpu14I TTCGAA 1 cut(s) 220
Bse118I RCCGGY 1 cut(s) 308
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 2 cut(s) 151, 347
BseYI CCCAGC 1 cut(s) 312
BsiSI CCGG 1 cut(s) 309
BslFI GGGAC 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 275
Bsp119I TTCGAA 1 cut(s) 220
Bsp143I GATC 4 cut(s) 53, 149, 201, 344
BspACI CCGC 2 cut(s) 28, 137
BspPI GGATC 2 cut(s) 48, 196
BspT104I TTCGAA 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 308
BssAI RCCGGY 1 cut(s) 308
BssMI GATC 4 cut(s) 53, 149, 201, 344
Bst4CI ACNGT 1 cut(s) 323
Bst6I CTCTTC 1 cut(s) 222
BstBI TTCGAA 1 cut(s) 220
BstDEI CTNAG 2 cut(s) 50, 302
BstKTI GATC 4 cut(s) 56, 152, 204, 347
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 4 cut(s) 53, 149, 201, 344
BstMWI GCNNNNNNNGC 2 cut(s) 139, 335
BstNSI RCATGY 1 cut(s) 83
BstV1I GCAGC 2 cut(s) 151, 347
BstV2I GAAGAC 2 cut(s) 188, 324
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
Cfr10I RCCGGY 1 cut(s) 308
Csp6I GTAC 1 cut(s) 324
CviAII CATG 5 cut(s) 58, 80, 122, 178, 235
CviJI RGCY 3 cut(s) 49, 312, 338
CviKI_1 RGCY 3 cut(s) 49, 312, 338
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 2 cut(s) 50, 302
DpnI GATC 4 cut(s) 55, 151, 203, 346
DpnII GATC 4 cut(s) 53, 149, 201, 344
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
FaeI CATG 5 cut(s) 61, 83, 125, 181, 238
FaqI GGGAC 1 cut(s) 275
FatI CATG 5 cut(s) 57, 79, 121, 177, 234
FauI CCCGC 1 cut(s) 21
Fnu4HI GCNGC 2 cut(s) 140, 336
Fsp4HI GCNGC 2 cut(s) 140, 336
GluI GCNGC 2 cut(s) 140, 336
GsaI CCCAGC 1 cut(s) 316
HapII CCGG 1 cut(s) 309
Hin1II CATG 5 cut(s) 61, 83, 125, 181, 238
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 1 cut(s) 128
HpaII CCGG 1 cut(s) 309
Hpy166II GTNNAC 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 342
Hpy8I GTNNAC 1 cut(s) 94
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4V TGCA 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 335
HpyF3I CTNAG 2 cut(s) 50, 302
Hsp92II CATG 5 cut(s) 61, 83, 125, 181, 238
Kzo9I GATC 4 cut(s) 53, 149, 201, 344
LpnPI CCDG 3 cut(s) 110, 298, 322
Lsp1109I GCAGC 2 cut(s) 151, 347
MaeIII GTNAC 1 cut(s) 82
MalI GATC 4 cut(s) 55, 151, 203, 346
MboI GATC 4 cut(s) 53, 149, 201, 344
MboII GAAGA 3 cut(s) 193, 209, 329
MfeI CAATTG 1 cut(s) 197
MflI RGATCY 1 cut(s) 53
MluCI AATT 2 cut(s) 197, 294
MnlI CCTC 3 cut(s) 25, 28, 118
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 2 cut(s) 245, 293
MspI CCGG 1 cut(s) 309
MunI CAATTG 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 139, 335
NdeII GATC 4 cut(s) 53, 149, 201, 344
NlaIII CATG 5 cut(s) 61, 83, 125, 181, 238
NmuCI GTSAC 1 cut(s) 82
NspI RCATGY 1 cut(s) 83
NspV TTCGAA 1 cut(s) 220
PciI ACATGT 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 2 cut(s) 141, 337
PscI ACATGT 1 cut(s) 79
PspFI CCCAGC 1 cut(s) 312
PsuI RGATCY 1 cut(s) 53
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
SaqAI TTAA 2 cut(s) 245, 293
SatI GCNGC 2 cut(s) 140, 336
Sau3AI GATC 4 cut(s) 53, 149, 201, 344
SetI ASST 3 cut(s) 39, 51, 340
SfuI TTCGAA 1 cut(s) 220
Sse9I AATT 2 cut(s) 197, 294
SsiI CCGC 2 cut(s) 28, 137
TaaI ACNGT 1 cut(s) 323
TaqI TCGA 1 cut(s) 220
TasI AATT 2 cut(s) 197, 294
TatI WGTACW 1 cut(s) 323
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 2 cut(s) 245, 293
Tru9I TTAA 2 cut(s) 245, 293
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 2 cut(s) 139, 335
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 24, 194
TspGWI ACGGA 1 cut(s) 292
XceI RCATGY 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.