Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001201

Physical Location & Seq

Genomic Coordinates Forward (+)

82298493 .. 82299930

Gene Structure 1438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036596

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGACACGAATAATTGGAGGCCTCCTCAAGGTGGACATACAAATGGTGCTGATTGGCAAGAGGAGGCCTATCAAAAGATCAAAGTCATGAAGGAGATGTACTACCCCGAACTAAGTGAAATGTACCAAAAAATTGCTACTAAACTTCATCAGTACGACTCCCTTCCGCAACAGCCAAAGTCAGATCAGCTTGAGAAGCTGAAGATGTTTAAGACCATGCTGGAGCGCCTGATTGTTGTCTTACAAATTTCCAAAACTAACATATCACCTAATTTGAATGAGAAGTTGGGTTTATATGAGAAGCAGATGATAAATTTTATTAATACAAATAGACCCAGGAACCCTGTTTCTTCTCTGCGGCCAGGGCAGCTCCCCCCACCGCATATGCAGTCCATGCAGCAGTCACAATCCCAGATTACTCAAGTGCAATCTCATGAAAATCAGATGATCCTACAATTGCAATCCCTGAACTTGCAAGGTTCCATGCCAACAATGCAGCAGAACAATATGACGGGCATGCAGCAAAATTCTATGTCTTCTTTATCCGGGGTTTCAACAGCACAGCAAAACATGGTGAATCCATTGCAGTCAAGTTCCAACACAGATCCAGGACAAGGATACCCTCAAGTCAAATTCTGGTATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIX_2

Protein Analysis

216

Amino Acids

24.68

Weight (kDa)

9.02

Isoelectric Point (pI)

57.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15772 AT1G15772 AT1G15772 AT1G15772
fragaria_vesca	FvH4_3g37510 FvH4_3g37510 FvH4_3g37510 FvH4_3g37510
malus_domestica	MD02G1272400.v1.1 MD03G1032800.v1.1 MD03G1033000.v1.1 MD03G1033200.v1.1 MD03G1033300.v1.1 MD03G1033600.v1.1 MD03G1033800.v1.1 MD03G1034600.v1.1
prunus_persica	Prupe.6G027600_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.I003700_v2.0.a1
pyrus_communis	pycom02g23320 pycom03g02630 pycom03g02650 pycom03g02660
rosa_chinensis	RchiOBHm_Chr5g0075821
rosa_laevigata	RLG00000036593 RLG00000036596
rosa_multiflora	Rmu_co8383039.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082370
rosa_rugosa	Rorug05G0442800
rosa_samantha	Rh5BG520700 Rh5BG521000 Rh5CG544700 Rh5CG545100 Rh5DG533300
rosa_wichuraiana	Rw5G046390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	167, 358, 380
AclWI	GGATC	2 cut(s)	442, 599
AcoI	YGGCCR	1 cut(s)	359
AcsI	RAATTY	4 cut(s)	246, 313, 526, 632
AcuI	CTGAAG	1 cut(s)	221
AfaI	GTAC	3 cut(s)	101, 125, 155
AfiI	CCNNNNNNNGG	3 cut(s)	29, 32, 614
AgsI	TTSAA	2 cut(s)	277, 555
AjnI	CCWGG	3 cut(s)	335, 361, 607
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	3 cut(s)	190, 199, 370
AluI	AGCT	3 cut(s)	190, 199, 370
AlwI	GGATC	2 cut(s)	442, 599
AoxI	GGCC	3 cut(s)	20, 66, 359
ApeKI	GCWGC	4 cut(s)	367, 397, 496, 520
ApoI	RAATTY	4 cut(s)	246, 313, 526, 632
AseI	ATTAAT	1 cut(s)	321
AspLEI	GCGC	1 cut(s)	228
AsuC2I	CCSGG	1 cut(s)	547
AsuHPI	GGTGA	2 cut(s)	258, 586
BarI	GAAGNNNNNNTAC	2 cut(s)	83, 115
BbsI	GAAGAC	1 cut(s)	528
BbvI	GCAGC	4 cut(s)	379, 409, 508, 532
BciT130I	CCWGG	3 cut(s)	337, 363, 609
BciVI	GTATCC	1 cut(s)	611
BcnI	CCSGG	1 cut(s)	547
BfoI	RGCGCY	1 cut(s)	229
BfuI	GTATCC	1 cut(s)	611
BisI	GCNGC	5 cut(s)	359, 368, 398, 497, 521
BlsI	GCNGC	5 cut(s)	360, 369, 399, 498, 522
Bme1390I	CCNGG	4 cut(s)	337, 363, 547, 609
BmiI	GGNNCC	2 cut(s)	341, 481
BmrFI	CCNGG	4 cut(s)	337, 363, 547, 609
BpiI	GAAGAC	1 cut(s)	528
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
BpmI	CTGGAG	1 cut(s)	242
BpuEI	CTTGAG	4 cut(s)	12, 212, 405, 609
BpuMI	CCSGG	1 cut(s)	547
BsaJI	CCNNGG	3 cut(s)	335, 362, 546
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 32, 614
Bse3DI	GCAATG	1 cut(s)	581
BseBI	CCWGG	3 cut(s)	337, 363, 609
BseDI	CCNNGG	3 cut(s)	335, 362, 546
BseLI	CCNNNNNNNGG	3 cut(s)	29, 32, 614
BseMI	GCAATG	1 cut(s)	581
BseRI	GAGGAG	2 cut(s)	15, 77
BseXI	GCAGC	4 cut(s)	379, 409, 508, 532
BshFI	GGCC	3 cut(s)	22, 68, 361
BsiSI	CCGG	1 cut(s)	546
BslI	CCNNNNNNNGG	3 cut(s)	29, 32, 614
BsnI	GGCC	3 cut(s)	22, 68, 361
Bsp143I	GATC	4 cut(s)	78, 184, 447, 604
BspACI	CCGC	3 cut(s)	167, 358, 380
BspANI	GGCC	3 cut(s)	22, 68, 361
BspHI	TCATGA	2 cut(s)	87, 433
BspLI	GGNNCC	2 cut(s)	341, 481
BspPI	GGATC	2 cut(s)	442, 599
BsrDI	GCAATG	1 cut(s)	581
BssECI	CCNNGG	3 cut(s)	335, 362, 546
BssMI	GATC	4 cut(s)	78, 184, 447, 604
Bst2UI	CCWGG	3 cut(s)	337, 363, 609
BstAPI	GCANNNNNTGC	1 cut(s)	394
BstC8I	GCNNGC	1 cut(s)	518
BstDEI	CTNAG	1 cut(s)	113
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	4 cut(s)	81, 187, 450, 607
BstMBI	GATC	4 cut(s)	78, 184, 447, 604
BstMWI	GCNNNNNNNGC	5 cut(s)	196, 364, 367, 394, 493
BstNI	CCWGG	3 cut(s)	337, 363, 609
BstNSI	RCATGY	1 cut(s)	520
BstSCI	CCNGG	4 cut(s)	335, 361, 545, 607
BstV1I	GCAGC	4 cut(s)	379, 409, 508, 532
BstV2I	GAAGAC	1 cut(s)	528
BstX2I	RGATCY	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	604
BsuI	GTATCC	1 cut(s)	611
BsuRI	GGCC	3 cut(s)	22, 68, 361
Cac8I	GCNNGC	1 cut(s)	518
CciI	TCATGA	2 cut(s)	87, 433
CfoI	GCGC	1 cut(s)	228
Csp6I	GTAC	3 cut(s)	100, 124, 154
CviAII	CATG	7 cut(s)	88, 217, 394, 434, 484, 517, 571
CviJI	RGCY	7 cut(s)	22, 68, 175, 190, 199, 361, 370
CviKI_1	RGCY	7 cut(s)	22, 68, 175, 190, 199, 361, 370
CviQI	GTAC	3 cut(s)	100, 124, 154
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	4 cut(s)	80, 186, 449, 606
DpnII	GATC	4 cut(s)	78, 184, 447, 604
EaeI	YGGCCR	1 cut(s)	359
Eco147I	AGGCCT	2 cut(s)	22, 68
Eco57I	CTGAAG	1 cut(s)	221
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoRII	CCWGG	3 cut(s)	335, 361, 607
FaeI	CATG	7 cut(s)	91, 220, 397, 437, 487, 520, 574
FatI	CATG	7 cut(s)	87, 216, 393, 433, 483, 516, 570
FauNDI	CATATG	1 cut(s)	384
Fnu4HI	GCNGC	5 cut(s)	359, 368, 398, 497, 521
Fsp4HI	GCNGC	5 cut(s)	359, 368, 398, 497, 521
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	5 cut(s)	359, 368, 398, 497, 521
GsuI	CTGGAG	1 cut(s)	242
HaeII	RGCGCY	1 cut(s)	229
HaeIII	GGCC	3 cut(s)	22, 68, 361
HapII	CCGG	1 cut(s)	546
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	7 cut(s)	91, 220, 397, 437, 487, 520, 574
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HinfI	GANTC	2 cut(s)	158, 577
HpaII	CCGG	1 cut(s)	546
HphI	GGTGA	2 cut(s)	258, 586
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	2 cut(s)	184, 444
Hpy188III	TCNNGA	2 cut(s)	88, 434
Hpy8I	GTNNAC	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	85, 173
HpyCH4V	TGCA	8 cut(s)	388, 397, 427, 460, 475, 496, 520, 586
HpyF10VI	GCNNNNNNNGC	5 cut(s)	196, 364, 367, 394, 493
HpyF3I	CTNAG	1 cut(s)	113
Hsp92II	CATG	7 cut(s)	91, 220, 397, 437, 487, 520, 574
HspAI	GCGC	1 cut(s)	226
Kzo9I	GATC	4 cut(s)	78, 184, 447, 604
LmnI	GCTCC	2 cut(s)	223, 375
Lsp1109I	GCAGC	4 cut(s)	379, 409, 508, 532
MaeIII	GTNAC	1 cut(s)	402
MalI	GATC	4 cut(s)	80, 186, 449, 606
MboI	GATC	4 cut(s)	78, 184, 447, 604
MboII	GAAGA	3 cut(s)	214, 342, 528
MfeI	CAATTG	1 cut(s)	455
MflI	RGATCY	1 cut(s)	604
MluCI	AATT	8 cut(s)	13, 132, 246, 271, 313, 455, 526, 632
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	621
MnlI	CCTC	6 cut(s)	12, 33, 36, 55, 58, 633
MseI	TTAA	2 cut(s)	210, 321
MslI	CAYNNNNRTG	1 cut(s)	42
MspI	CCGG	1 cut(s)	546
MspR9I	CCNGG	4 cut(s)	337, 363, 547, 609
MunI	CAATTG	1 cut(s)	455
MvaI	CCWGG	3 cut(s)	337, 363, 609
MwoI	GCNNNNNNNGC	5 cut(s)	196, 364, 367, 394, 493
NciI	CCSGG	1 cut(s)	547
NdeI	CATATG	1 cut(s)	384
NdeII	GATC	4 cut(s)	78, 184, 447, 604
NlaIII	CATG	7 cut(s)	91, 220, 397, 437, 487, 520, 574
NlaIV	GGNNCC	2 cut(s)	341, 481
NmuCI	GTSAC	1 cut(s)	402
NspI	RCATGY	1 cut(s)	520
PaeI	GCATGC	1 cut(s)	520
PagI	TCATGA	2 cut(s)	87, 433
PceI	AGGCCT	2 cut(s)	22, 68
PfeI	GAWTC	1 cut(s)	577
PfoI	TCCNGGA	1 cut(s)	607
PkrI	GCNGC	5 cut(s)	360, 369, 399, 498, 522
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PshBI	ATTAAT	1 cut(s)	321
Psp6I	CCWGG	3 cut(s)	335, 361, 607
PspGI	CCWGG	3 cut(s)	335, 361, 607
PspN4I	GGNNCC	2 cut(s)	341, 481
PsuI	RGATCY	1 cut(s)	604
RsaI	GTAC	3 cut(s)	101, 125, 155
RsaNI	GTAC	3 cut(s)	100, 124, 154
RseI	CAYNNNNRTG	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	210, 321
SatI	GCNGC	5 cut(s)	359, 368, 398, 497, 521
Sau3AI	GATC	4 cut(s)	78, 184, 447, 604
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	4 cut(s)	337, 363, 547, 609
SetI	ASST	6 cut(s)	34, 192, 201, 271, 372, 481
SmiMI	CAYNNNNRTG	1 cut(s)	42
SmlI	CTYRAG	4 cut(s)	27, 191, 420, 624
SmoI	CTYRAG	4 cut(s)	27, 191, 420, 624
SphI	GCATGC	1 cut(s)	520
Sse9I	AATT	8 cut(s)	13, 132, 246, 271, 313, 455, 526, 632
SseBI	AGGCCT	2 cut(s)	22, 68
SsiI	CCGC	3 cut(s)	167, 358, 380
StuI	AGGCCT	2 cut(s)	22, 68
StyD4I	CCNGG	4 cut(s)	335, 361, 545, 607
TasI	AATT	8 cut(s)	13, 132, 246, 271, 313, 455, 526, 632
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	1 cut(s)	361
TfiI	GAWTC	1 cut(s)	577
Tru1I	TTAA	2 cut(s)	210, 321
Tru9I	TTAA	2 cut(s)	210, 321
TseFI	GTSAC	1 cut(s)	402
TseI	GCWGC	4 cut(s)	367, 397, 496, 520
Tsp45I	GTSAC	1 cut(s)	402
TspDTI	ATGAA	3 cut(s)	104, 137, 450
VspI	ATTAAT	1 cut(s)	321
XagI	CCTNNNNNAGG	1 cut(s)	27
XapI	RAATTY	4 cut(s)	246, 313, 526, 632
XceI	RCATGY	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.