Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001201

Physical Location & Seq

Genomic Coordinates Reverse (-)

2644476 .. 2647330

Gene Structure 2855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1032800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGATACCAATAAGTGGAGGCCTTCTCAAGTTGGAGAGGCCGCCATGGATGCCGGCGATTGGAGGAGTCAGCTGCAGGCTGATTCAAGGCAAAGAATTGTCAACAATCTAATGGATACGTTGAAGAGGCATTTTCCCTTCTCCGGACAAGATGGATTACAGGAACTCAGTAAAATTGCTGTAAGGTTTGAGGAAAAGATTTATACTGCAGCCACAAGCCAGTCGGATTATCTACGGAAAATTTCTCTGAAGATGCTCACACTGGAGACCAAGTCTCAGAATTCAATGGGCAATCCTTTACAATCTAACTCTGCTGCTTTTCTAGATTCCTCAGCTCAGACTGGATATGCAAATGGGGGTGATTGGCAAGAGGAGGTCTATCAAAAAATCAAAGTCATGAAGGAAAGGTACGAACCCGAACTAAGTGAAATGTATCAGAAAATTGCTACTAAACTTCAGCAGCACGATTCTCTTCCACAACAACCAAAGTCAGAGCAGCTTGAGAAGCTAAAAATGTTCAGAACCATGTTAGAGCGCCTCATATCAATCTTACAGGTTTCCAAGAGTAACATTTCACCTGGATTGAAAGACAAGTTGGGTTTATATGAGAAGCAGATAGTAAATTTTATTAATACAAATAGACCGAGGAAGCAAGGTCCTCCTCTGCAACAAGGGCAGCTCCCCCCACCTCCTCATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIX_2

Protein Analysis

234

Amino Acids

26.69

Weight (kDa)

9.35

Isoelectric Point (pI)

55.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KIX_2	PF16987	19 - 98	1.6e-34	KIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15772 AT1G15772 AT1G15772 AT1G15772
fragaria_vesca	FvH4_3g37510 FvH4_3g37510 FvH4_3g37510 FvH4_3g37510
malus_domestica	MD02G1272400.v1.1 MD03G1032800.v1.1 MD03G1033000.v1.1 MD03G1033200.v1.1 MD03G1033300.v1.1 MD03G1033600.v1.1 MD03G1033800.v1.1 MD03G1034600.v1.1
prunus_persica	Prupe.6G027600_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.I003700_v2.0.a1
pyrus_communis	pycom02g23320 pycom03g02630 pycom03g02650 pycom03g02660
rosa_chinensis	RchiOBHm_Chr5g0075821
rosa_laevigata	RLG00000036593 RLG00000036596
rosa_multiflora	Rmu_co8383039.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082370
rosa_rugosa	Rorug05G0442800
rosa_samantha	Rh5BG520700 Rh5BG521000 Rh5CG544700 Rh5CG545100 Rh5DG533300
rosa_wichuraiana	Rw5G046390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	15
AccIII	TCCGGA	1 cut(s)	143
AciI	CCGC	1 cut(s)	42
AcsI	RAATTY	3 cut(s)	240, 280, 622
AcuI	CTGAAG	2 cut(s)	269, 440
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	3 cut(s)	15, 60, 143
AgsI	TTSAA	4 cut(s)	87, 124, 285, 586
AjnI	CCWGG	1 cut(s)	577
AjuI	GAANNNNNNNTTGG	2 cut(s)	578, 610
AluBI	AGCT	5 cut(s)	73, 335, 499, 508, 679
AluI	AGCT	5 cut(s)	73, 335, 499, 508, 679
Alw26I	GTCTC	2 cut(s)	260, 279
Aor13HI	TCCGGA	1 cut(s)	143
AoxI	GGCC	2 cut(s)	20, 39
ApeKI	GCWGC	6 cut(s)	73, 209, 314, 460, 496, 676
ApoI	RAATTY	3 cut(s)	240, 280, 622
AseI	ATTAAT	1 cut(s)	630
AspLEI	GCGC	1 cut(s)	537
AspS9I	GGNCC	1 cut(s)	656
AsuHPI	GGTGA	2 cut(s)	371, 567
AvaII	GGWCC	1 cut(s)	656
BarI	GAAGNNNNNNTAC	2 cut(s)	392, 424
BbvCI	CCTCAGC	1 cut(s)	331
BbvI	GCAGC	6 cut(s)	60, 221, 301, 472, 508, 688
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	579
BciVI	GTATCC	1 cut(s)	109
BcoDI	GTCTC	2 cut(s)	260, 279
BfaI	CTAG	1 cut(s)	323
BfmI	CTRYAG	2 cut(s)	74, 207
BfoI	RGCGCY	1 cut(s)	538
BfuI	GTATCC	1 cut(s)	109
BisI	GCNGC	7 cut(s)	42, 74, 210, 315, 461, 497, 677
BlsI	GCNGC	7 cut(s)	43, 75, 211, 316, 462, 498, 678
Bme1390I	CCNGG	1 cut(s)	579
Bme18I	GGWCC	1 cut(s)	656
BmgT120I	GGNCC	1 cut(s)	656
BmrFI	CCNGG	1 cut(s)	579
BmsI	GCATC	2 cut(s)	40, 243
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
BpmI	CTGGAG	1 cut(s)	284
Bpu10I	CCTNAGC	1 cut(s)	331
BpuEI	CTTGAG	2 cut(s)	12, 521
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	2 cut(s)	45, 644
BsaWI	WCCGGW	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 60, 143
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	3 cut(s)	220, 267, 346
BseAI	TCCGGA	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	579
BseDI	CCNNGG	2 cut(s)	45, 644
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	3 cut(s)	15, 60, 143
BseMII	CTCAG	4 cut(s)	181, 290, 345, 350
BseNI	ACTGG	3 cut(s)	220, 267, 346
BseRI	GAGGAG	4 cut(s)	79, 386, 651, 681
BseXI	GCAGC	6 cut(s)	60, 221, 301, 472, 508, 688
BshFI	GGCC	2 cut(s)	22, 41
BsiSI	CCGG	2 cut(s)	54, 144
BslI	CCNNNNNNNGG	3 cut(s)	15, 60, 143
BsmAI	GTCTC	2 cut(s)	260, 279
BsnI	GGCC	2 cut(s)	22, 41
Bso31I	GGTCTC	1 cut(s)	260
Bsp13I	TCCGGA	1 cut(s)	143
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	2 cut(s)	22, 41
BspCNI	CTCAG	4 cut(s)	180, 289, 344, 349
BspEI	TCCGGA	1 cut(s)	143
BspHI	TCATGA	1 cut(s)	396
BspMAI	CTGCAG	2 cut(s)	78, 211
BspTNI	GGTCTC	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	3 cut(s)	220, 267, 346
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	45, 644
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	579
Bst6I	CTCTTC	2 cut(s)	119, 477
BstC8I	GCNNGC	2 cut(s)	55, 78
BstDEI	CTNAG	5 cut(s)	167, 276, 331, 336, 422
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	55
BstH2I	RGCGCY	1 cut(s)	538
BstHHI	GCGC	1 cut(s)	537
BstMAI	GTCTC	2 cut(s)	260, 279
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 505, 673
BstNI	CCWGG	1 cut(s)	579
BstSCI	CCNGG	1 cut(s)	577
BstSFI	CTRYAG	2 cut(s)	74, 207
BstV1I	GCAGC	6 cut(s)	60, 221, 301, 472, 508, 688
BsuI	GTATCC	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	22, 41
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	260
Cac8I	GCNNGC	2 cut(s)	55, 78
CciI	TCATGA	1 cut(s)	396
CfoI	GCGC	1 cut(s)	537
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	656
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	3 cut(s)	46, 397, 526
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	5 cut(s)	167, 276, 331, 336, 422
Eam1104I	CTCTTC	2 cut(s)	119, 477
EarI	CTCTTC	2 cut(s)	119, 477
Eco130I	CCWWGG	1 cut(s)	45
Eco147I	AGGCCT	1 cut(s)	22
Eco31I	GGTCTC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	656
Eco57I	CTGAAG	2 cut(s)	269, 440
EcoO109I	RGGNCCY	1 cut(s)	656
EcoRI	GAATTC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	577
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	3 cut(s)	49, 400, 529
FatI	CATG	3 cut(s)	45, 396, 525
FauNDI	CATATG	1 cut(s)	696
Fnu4HI	GCNGC	7 cut(s)	42, 74, 210, 315, 461, 497, 677
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	7 cut(s)	42, 74, 210, 315, 461, 497, 677
FspBI	CTAG	1 cut(s)	323
GlaI	GCGC	1 cut(s)	536
GluI	GCNGC	7 cut(s)	42, 74, 210, 315, 461, 497, 677
GsuI	CTGGAG	1 cut(s)	284
HaeII	RGCGCY	1 cut(s)	538
HaeIII	GGCC	2 cut(s)	22, 41
HapII	CCGG	2 cut(s)	54, 144
HhaI	GCGC	1 cut(s)	537
Hin1II	CATG	3 cut(s)	49, 400, 529
Hin6I	GCGC	1 cut(s)	535
HinP1I	GCGC	1 cut(s)	535
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	4 cut(s)	67, 83, 326, 467
HpaII	CCGG	2 cut(s)	54, 144
HphI	GGTGA	2 cut(s)	371, 567
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	7 cut(s)	226, 249, 279, 339, 438, 493, 521
Hpy188III	TCNNGA	3 cut(s)	144, 323, 397
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	3 cut(s)	33, 148, 394
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	4 cut(s)	76, 209, 350, 667
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 505, 673
HpyF3I	CTNAG	5 cut(s)	167, 276, 331, 336, 422
HpySE526I	ACGT	1 cut(s)	119
Hsp92II	CATG	3 cut(s)	49, 400, 529
HspAI	GCGC	1 cut(s)	535
Kpn2I	TCCGGA	1 cut(s)	143
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
LmnI	GCTCC	1 cut(s)	684
Lsp1109I	GCAGC	6 cut(s)	60, 221, 301, 472, 508, 688
LweI	GCATC	2 cut(s)	40, 243
MaeI	CTAG	1 cut(s)	323
MaeII	ACGT	1 cut(s)	119
MaeIII	GTNAC	1 cut(s)	566
MboII	GAAGA	3 cut(s)	136, 262, 464
MluCI	AATT	6 cut(s)	96, 174, 240, 280, 441, 622
MlyI	GAGTC	1 cut(s)	76
MmeI	TCCRAC	2 cut(s)	13, 204
MroI	TCCGGA	1 cut(s)	143
MroNI	GCCGGC	1 cut(s)	53
MseI	TTAA	1 cut(s)	630
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	2 cut(s)	54, 144
MspR9I	CCNGG	1 cut(s)	579
MvaI	CCWGG	1 cut(s)	579
MwoI	GCNNNNNNNGC	3 cut(s)	50, 505, 673
NaeI	GCCGGC	1 cut(s)	55
NcoI	CCATGG	1 cut(s)	45
NdeI	CATATG	1 cut(s)	696
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	3 cut(s)	49, 400, 529
PagI	TCATGA	1 cut(s)	396
PceI	AGGCCT	1 cut(s)	22
PdiI	GCCGGC	1 cut(s)	55
PfeI	GAWTC	3 cut(s)	83, 326, 467
PflFI	GACNNNGTC	1 cut(s)	271
PflMI	CCANNNNNTGG	1 cut(s)	15
PkrI	GCNGC	7 cut(s)	43, 75, 211, 316, 462, 498, 678
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
PpuMI	RGGWCCY	1 cut(s)	656
PshBI	ATTAAT	1 cut(s)	630
Psp5II	RGGWCCY	1 cut(s)	656
Psp6I	CCWGG	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	577
PspPI	GGNCC	1 cut(s)	656
PspPPI	RGGWCCY	1 cut(s)	656
PstI	CTGCAG	2 cut(s)	78, 211
PsyI	GACNNNGTC	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	73
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
SaqAI	TTAA	1 cut(s)	630
SatI	GCNGC	7 cut(s)	42, 74, 210, 315, 461, 497, 677
Sau96I	GGNCC	1 cut(s)	656
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	579
SfaNI	GCATC	2 cut(s)	40, 243
SfcI	CTRYAG	2 cut(s)	74, 207
SinI	GGWCC	1 cut(s)	656
SmlI	CTYRAG	2 cut(s)	27, 500
SmoI	CTYRAG	2 cut(s)	27, 500
Sse9I	AATT	6 cut(s)	96, 174, 240, 280, 441, 622
SseBI	AGGCCT	1 cut(s)	22
SsiI	CCGC	1 cut(s)	42
SspMI	CTAG	1 cut(s)	323
StuI	AGGCCT	1 cut(s)	22
StyD4I	CCNGG	1 cut(s)	577
StyI	CCWWGG	1 cut(s)	45
TaiI	ACGT	1 cut(s)	122
TaqII	GACCGA	1 cut(s)	658
TasI	AATT	6 cut(s)	96, 174, 240, 280, 441, 622
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	3 cut(s)	83, 326, 467
Tru1I	TTAA	1 cut(s)	630
Tru9I	TTAA	1 cut(s)	630
TscAI	CASTG	1 cut(s)	267
TseI	GCWGC	6 cut(s)	73, 209, 314, 460, 496, 676
TspDTI	ATGAA	1 cut(s)	413
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	1 cut(s)	267
Tth111I	GACNNNGTC	1 cut(s)	271
Van91I	CCANNNNNTGG	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	656
VspI	ATTAAT	1 cut(s)	630
XapI	RAATTY	3 cut(s)	240, 280, 622
XbaI	TCTAGA	1 cut(s)	322
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.