Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001201

Physical Location & Seq

Genomic Coordinates Reverse (-)

2671308 .. 2673294

Gene Structure 1987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1033200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGATACGTTGAAGAGGCATTTTCCCTTCTCCGGACAAGATGGATTACAGGAACTCAGTAAAATTGCTGTAAGGTTTGAGGAAAAGATTTATACTGCAGCCACAAGCCAGTCGGATTATCTACGGAAAATTTCTCTGAAGATGCTCACAATGGAGACCAAGTCTCAGAATTCAATGGGCAATCCTTTACAATCTAACTCTGCTGCTTCTCTAGATTCCTCAGCTCAGACTGGATATGCAAATGGGGGTGATTGGCAAGAGGAGGTCTATCAAAAAATCAAAGTCATGAAGGAAAATTACTTACCCGAACTAAGTGAAATGTATCAGAAAATTGCTACTAAACTTCAGCAGCACGATTCTCTTCCACAACAACCAAAGTCAGAGCAGCTTGAGAAGCTAAAAATGTTCAGAACCATGTTAGAGCGCCTCATATCAATCTTACAGGTTTCCAAGAGTAACATTTCACCTGGTTTGAAAGACAAGTTGGGTTTATTTGAGAAGCAGATAGTAAATTTTATTAATACAAATAGACCGAGGAAGCAAGGTCCTCCTCTGCAACAAGGGCAGCTCCCCCCACCTCCTCATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIX_2

Protein Analysis

197

Amino Acids

22.34

Weight (kDa)

9.4

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KIX_2	PF16987	1 - 61	1.2e-24	KIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15772 AT1G15772 AT1G15772 AT1G15772
fragaria_vesca	FvH4_3g37510 FvH4_3g37510 FvH4_3g37510 FvH4_3g37510
malus_domestica	MD02G1272400.v1.1 MD03G1032800.v1.1 MD03G1033000.v1.1 MD03G1033200.v1.1 MD03G1033300.v1.1 MD03G1033600.v1.1 MD03G1033800.v1.1 MD03G1034600.v1.1
prunus_persica	Prupe.6G027600_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.I003700_v2.0.a1
pyrus_communis	pycom02g23320 pycom03g02630 pycom03g02650 pycom03g02660
rosa_chinensis	RchiOBHm_Chr5g0075821
rosa_laevigata	RLG00000036593 RLG00000036596
rosa_multiflora	Rmu_co8383039.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082370
rosa_rugosa	Rorug05G0442800
rosa_samantha	Rh5BG520700 Rh5BG521000 Rh5CG544700 Rh5CG545100 Rh5DG533300
rosa_wichuraiana	Rw5G046390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	32
AcsI	RAATTY	3 cut(s)	129, 169, 511
AcuI	CTGAAG	2 cut(s)	158, 329
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	3 cut(s)	13, 174, 475
AjnI	CCWGG	1 cut(s)	466
AjuI	GAANNNNNNNTTGG	2 cut(s)	467, 499
AluBI	AGCT	4 cut(s)	224, 388, 397, 568
AluI	AGCT	4 cut(s)	224, 388, 397, 568
Alw26I	GTCTC	2 cut(s)	149, 168
Aor13HI	TCCGGA	1 cut(s)	32
ApeKI	GCWGC	5 cut(s)	98, 203, 349, 385, 565
ApoI	RAATTY	3 cut(s)	129, 169, 511
AseI	ATTAAT	1 cut(s)	519
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	1 cut(s)	545
AsuHPI	GGTGA	2 cut(s)	260, 456
AvaII	GGWCC	1 cut(s)	545
BarI	GAAGNNNNNNTAC	2 cut(s)	281, 313
BbvCI	CCTCAGC	1 cut(s)	220
BbvI	GCAGC	5 cut(s)	110, 190, 361, 397, 577
BccI	CCATC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	468
BcoDI	GTCTC	2 cut(s)	149, 168
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	427
BisI	GCNGC	5 cut(s)	99, 204, 350, 386, 566
BlsI	GCNGC	5 cut(s)	100, 205, 351, 387, 567
Bme1390I	CCNGG	1 cut(s)	468
Bme18I	GGWCC	1 cut(s)	545
BmgT120I	GGNCC	1 cut(s)	545
BmrFI	CCNGG	1 cut(s)	468
BmsI	GCATC	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	220
BpuEI	CTTGAG	1 cut(s)	410
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	533
BsaWI	WCCGGW	1 cut(s)	32
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse1I	ACTGG	2 cut(s)	109, 235
BseAI	TCCGGA	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	468
BseDI	CCNNGG	1 cut(s)	533
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMII	CTCAG	4 cut(s)	70, 179, 234, 239
BseNI	ACTGG	2 cut(s)	109, 235
BseRI	GAGGAG	3 cut(s)	275, 540, 570
BseXI	GCAGC	5 cut(s)	110, 190, 361, 397, 577
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	2 cut(s)	149, 168
Bso31I	GGTCTC	1 cut(s)	149
Bsp13I	TCCGGA	1 cut(s)	32
BspCNI	CTCAG	4 cut(s)	69, 178, 233, 238
BspEI	TCCGGA	1 cut(s)	32
BspHI	TCATGA	1 cut(s)	285
BspMAI	CTGCAG	1 cut(s)	100
BspTNI	GGTCTC	1 cut(s)	149
BsrI	ACTGG	2 cut(s)	109, 235
BssECI	CCNNGG	1 cut(s)	533
Bst2UI	CCWGG	1 cut(s)	468
Bst6I	CTCTTC	2 cut(s)	8, 366
BstDEI	CTNAG	5 cut(s)	56, 165, 220, 225, 311
BstH2I	RGCGCY	1 cut(s)	427
BstHHI	GCGC	1 cut(s)	426
BstMAI	GTCTC	2 cut(s)	149, 168
BstMWI	GCNNNNNNNGC	2 cut(s)	394, 562
BstNI	CCWGG	1 cut(s)	468
BstSCI	CCNGG	1 cut(s)	466
BstSFI	CTRYAG	1 cut(s)	96
BstV1I	GCAGC	5 cut(s)	110, 190, 361, 397, 577
CciI	TCATGA	1 cut(s)	285
CfoI	GCGC	1 cut(s)	426
Cfr13I	GGNCC	1 cut(s)	545
CsiI	ACCWGGT	1 cut(s)	466
CviAII	CATG	2 cut(s)	286, 415
CviJI	RGCY	6 cut(s)	101, 108, 224, 388, 397, 568
CviKI_1	RGCY	6 cut(s)	101, 108, 224, 388, 397, 568
DdeI	CTNAG	5 cut(s)	56, 165, 220, 225, 311
Eam1104I	CTCTTC	2 cut(s)	8, 366
EarI	CTCTTC	2 cut(s)	8, 366
Eco31I	GGTCTC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	545
Eco57I	CTGAAG	2 cut(s)	158, 329
EcoO109I	RGGNCCY	1 cut(s)	545
EcoRI	GAATTC	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	466
FaeI	CATG	2 cut(s)	289, 418
FaiI	YATR	7 cut(s)	93, 237, 287, 416, 431, 585, 587
FatI	CATG	2 cut(s)	285, 414
FauNDI	CATATG	1 cut(s)	585
Fnu4HI	GCNGC	5 cut(s)	99, 204, 350, 386, 566
Fsp4HI	GCNGC	5 cut(s)	99, 204, 350, 386, 566
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	5 cut(s)	99, 204, 350, 386, 566
HaeII	RGCGCY	1 cut(s)	427
HapII	CCGG	1 cut(s)	33
HhaI	GCGC	1 cut(s)	426
Hin1II	CATG	2 cut(s)	289, 418
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HinfI	GANTC	2 cut(s)	215, 356
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	2 cut(s)	260, 456
Hpy188I	TCNGA	7 cut(s)	115, 138, 168, 228, 327, 382, 410
Hpy188III	TCNNGA	3 cut(s)	33, 212, 286
HpyAV	CCTTC	2 cut(s)	37, 283
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	3 cut(s)	98, 239, 556
HpyF10VI	GCNNNNNNNGC	2 cut(s)	394, 562
HpyF3I	CTNAG	5 cut(s)	56, 165, 220, 225, 311
HpySE526I	ACGT	1 cut(s)	8
Hsp92II	CATG	2 cut(s)	289, 418
HspAI	GCGC	1 cut(s)	424
Kpn2I	TCCGGA	1 cut(s)	32
LmnI	GCTCC	1 cut(s)	573
LpnPI	CCDG	7 cut(s)	35, 46, 122, 216, 428, 453, 480
Lsp1109I	GCAGC	5 cut(s)	110, 190, 361, 397, 577
LweI	GCATC	1 cut(s)	132
MabI	ACCWGGT	1 cut(s)	466
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	455
MboII	GAAGA	3 cut(s)	25, 151, 353
MluCI	AATT	6 cut(s)	63, 129, 169, 295, 330, 511
MmeI	TCCRAC	1 cut(s)	93
MroI	TCCGGA	1 cut(s)	32
MseI	TTAA	1 cut(s)	519
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	468
MwoI	GCNNNNNNNGC	2 cut(s)	394, 562
NdeI	CATATG	1 cut(s)	585
NlaIII	CATG	2 cut(s)	289, 418
PagI	TCATGA	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	215, 356
PflFI	GACNNNGTC	1 cut(s)	160
PkrI	GCNGC	5 cut(s)	100, 205, 351, 387, 567
PpuMI	RGGWCCY	1 cut(s)	545
PshBI	ATTAAT	1 cut(s)	519
Psp5II	RGGWCCY	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	466
PspGI	CCWGG	1 cut(s)	466
PspPI	GGNCC	1 cut(s)	545
PspPPI	RGGWCCY	1 cut(s)	545
PstI	CTGCAG	1 cut(s)	100
PsyI	GACNNNGTC	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	5 cut(s)	99, 204, 350, 386, 566
Sau96I	GGNCC	1 cut(s)	545
ScrFI	CCNGG	1 cut(s)	468
SexAI	ACCWGGT	1 cut(s)	466
SfaNI	GCATC	1 cut(s)	132
SfcI	CTRYAG	1 cut(s)	96
SinI	GGWCC	1 cut(s)	545
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	6 cut(s)	63, 129, 169, 295, 330, 511
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	466
TaiI	ACGT	1 cut(s)	11
TaqII	GACCGA	1 cut(s)	547
TasI	AATT	6 cut(s)	63, 129, 169, 295, 330, 511
TfiI	GAWTC	2 cut(s)	215, 356
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TseI	GCWGC	5 cut(s)	98, 203, 349, 385, 565
TspDTI	ATGAA	1 cut(s)	302
TspGWI	ACGGA	1 cut(s)	139
Tth111I	GACNNNGTC	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	545
VspI	ATTAAT	1 cut(s)	519
XapI	RAATTY	3 cut(s)	129, 169, 511
XbaI	TCTAGA	1 cut(s)	211
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.