pycom03g02660

Mediator of RNA polymerase II transcription subunit 15a-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
2037016 .. 2039576
2561 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g02660.2

Sequence Viewer

Length: 1773 bp
ATGTTCTGCATGCAATGCTTTTTTTTTTTCTTTCTCATTTTTAACCCTCGTGTTCAAATTTCATTTTATGTGCAAACATTGACATATATCTCTCTATATTTTGTAGCTTCTCTAGATTCCTCAGCTCAGACTGGACATGCAAATGGGGGTGATTGGCAAGAGGAGGTCTATCAAAAAATCAAAGTCATGAAGGAAAAGTACTTACCTGAACTAAGTGAAATGTATCAGAAAATTGCTACTAAACTTCAGCAGCACGATTCTCTTCCACAACAACCAAAGTCAGAGCAGCTTGAGAAGCTAAAAATGTTCAAAACCATGTTAGAGCGCCTCATATCAATCTTACAGGTTTCCAAGAGTAACATTTCACCTGGTTTGAAAGACAAGTTGGGTTTATATGAGAAGCAGATAGTAAATTTTATTAATACAAATAGACCGAGGAAGCAAGGTCCTCCTCTGCAACAAGGGCAGCTCACCCCACCTCATTTGCACTCCATGCAGCAGCAGCAGTCTCAAATTCCTCAAGTGCAGTCTCATGAAAATCAAATGAACCTGCAGTTGCAAACAATGAATTTACGAGGTTCTGTGCCAACAATGCAGCAGAACAATATGACAAGTTTGCAGCAAAATTCAGTGTCTTTGATATCTGGGGTTTCAACAGCACTGCAGAACATGATGAATTCATTGCAGCTGAGTACAAATTTGGATTCAGGACAGGGAAATGCACTGAACTCTTTGCAGCAAGTTCCGGTGGGATCTATCCAACAAACACCTGTCAGTGCTCCCCAGCTAGCTAACATGAATGGTTTGTCATCACAGAGTGGGGTTAGTATGCTTCAGCCAAATATTAACTCCCTTCAGTCAAATTCTGGTATGCTTCAACACCAGCAATTAAAACAGCAGGAACAGCAAATGCTTCAGAATCAACTGAAGCAGCAGTATCAACAGCGAATGCAGCAGCAACTGATACAGAAGCAGCTGCAACAGCAACAGCGGCAGCAGCAACTGCAGCAACAGTTGCAGCAAGCAAAGCAGCAGCTTCCGGCGCAGATGGAGGCGAACCAACACCAAATGCCACAGCTTCATCAAATGAATGATGCAGATGACTTGAAGATGAGACAGGGGATGGGTGTTAAGCCAGGGGTTTTTCAGCAACATATGTCCTCAGGCCAGCGTGCTTATCCTCATCAGCAGTTGAAATCAGGATCTCCATTTCCTATTCCTTCATCATACCAACTCCTTCAGGCTGCATCTCCTCAAATTTCGCAACATTCTTCTCCCCAAGTTGACCACAAGAATCTACTGACTCACCCGAAAGCTGGAACACCATTGCAAACTGCCTGTTCACCTTTTGTCATCCCATCTCCTTCAACTCCCATGGCTCCATCCCCCATGCCATGGGATTCTGAGAAACCTTCCTCACTACCAAATGCTGGGAATATCGGACATCAACAAGCTGCTGGGGTGGGAGCACCAGTCCAGTCTTTTGCAATTGGCAGCCCTGGGATATCGGCATCTCCTTTGCTTGCTGAATTTAGTGTACCAGATGGTAGTCATGTTAATGCTTTGTCAACTATTTCTGGCAAGTCGAGTGTTACTGAGCAGCCTCTTGAACGCTTGATTAAGGCGGAGAAATCGATGTCACCTAATGCTTTGAGTGCATCTGTCAGTGACATTGACTCAGATGCATTGAGTGCATCTGTTTGCTGCTGTGAGGTGGAAGGGTGGGCGTTGTCATCATTGTGGTGCTGCTACTCCCGCCGCTGCTGCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

591

Amino Acids

65.45

Weight (kDa)

8.75

Isoelectric Point (pI)

66.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 558
AccB7I CCANNNNNTGG 2 cut(s) 1395, 1430
AciI CCGC 4 cut(s) 991, 1625, 1756, 1759
AclWI GGATC 2 cut(s) 760, 1210
AcuI CTGAAG 6 cut(s) 230, 818, 839, 899, 947, 1223
AdeI CACNNNGTG 1 cut(s) 818
AfaI GTAC 3 cut(s) 200, 694, 1539
AfiI CCNNNNNNNGG 3 cut(s) 1316, 1395, 1430
AgsI TTSAA 9 cut(s) 56, 310, 376, 654, 878, 1108, 1195, 1368, 1610
AjnI CCWGG 3 cut(s) 367, 1135, 1498
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
Alw21I GWGCWC 2 cut(s) 781, 1471
Alw26I GTCTC 3 cut(s) 513, 534, 1108
AlwI GGATC 2 cut(s) 760, 1210
AlwNI CAGNNNCTG 2 cut(s) 961, 1003
AoxI GGCC 1 cut(s) 1165
AseI ATTAAT 1 cut(s) 420
AspLEI GCGC 2 cut(s) 327, 1045
AspS9I GGNCC 1 cut(s) 446
AsuHPI GGTGA 6 cut(s) 161, 357, 463, 1298, 1335, 1632
AsuNHI GCTAGC 1 cut(s) 787
AvaII GGWCC 1 cut(s) 446
AxyI CCTNAGG 1 cut(s) 1162
BarI GAAGNNNNNNTAC 2 cut(s) 182, 214
BauI CACGAG 1 cut(s) 48
Bbv12I GWGCWC 2 cut(s) 781, 1471
BbvCI CCTCAGC 1 cut(s) 121
BccI CCATC 5 cut(s) 1042, 1117, 1366, 1390, 1538
BciT130I CCWGG 3 cut(s) 369, 1137, 1500
BcoDI GTCTC 3 cut(s) 513, 534, 1108
BfaI CTAG 3 cut(s) 113, 788, 1771
BfmI CTRYAG 3 cut(s) 551, 662, 1004
BfoI RGCGCY 1 cut(s) 328
BfuAI ACCTGC 1 cut(s) 558
BmcAI AGTACT 1 cut(s) 200
Bme1390I CCNGG 3 cut(s) 369, 1137, 1500
Bme18I GGWCC 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 446
BmiI GGNNCC 1 cut(s) 1380
BmrFI CCNGG 3 cut(s) 369, 1137, 1500
BmsI GCATC 6 cut(s) 1084, 1256, 1520, 1667, 1672, 1703
BmtI GCTAGC 1 cut(s) 791
Bpu10I CCTNAGC 1 cut(s) 121
BpuEI CTTGAG 2 cut(s) 311, 504
Bsa29I ATCGAT 1 cut(s) 1634
BsaJI CCNNGG 6 cut(s) 434, 1136, 1374, 1394, 1498, 1499
BsaWI WCCGGW 1 cut(s) 745
BsaXI ACNNNNNCTCC 2 cut(s) 1458, 1488
Bsc4I CCNNNNNNNGG 3 cut(s) 1316, 1395, 1430
Bse1I ACTGG 3 cut(s) 136, 1472, 1477
Bse21I CCTNAGG 1 cut(s) 1162
Bse3DI GCAATG 3 cut(s) 20, 680, 1325
BseBI CCWGG 3 cut(s) 369, 1137, 1500
BseCI ATCGAT 1 cut(s) 1634
BseDI CCNNGG 6 cut(s) 434, 1136, 1374, 1394, 1498, 1499
BseGI GGATG 3 cut(s) 1128, 1353, 1382
BseLI CCNNNNNNNGG 3 cut(s) 1316, 1395, 1430
BseMI GCAATG 3 cut(s) 20, 680, 1325
BseMII CTCAG 7 cut(s) 135, 140, 680, 1176, 1395, 1587, 1692
BseNI ACTGG 3 cut(s) 136, 1472, 1477
BseRI GAGGAG 3 cut(s) 176, 441, 1242
BseYI CCCAGC 3 cut(s) 783, 1430, 1457
BsgI GTGCAG 1 cut(s) 545
BshFI GGCC 1 cut(s) 1167
BshVI ATCGAT 1 cut(s) 1634
BsiHKAI GWGCWC 2 cut(s) 781, 1471
BsiSI CCGG 2 cut(s) 746, 1040
BslI CCNNNNNNNGG 3 cut(s) 1316, 1395, 1430
BsmAI GTCTC 3 cut(s) 513, 534, 1108
BsmI GAATGC 1 cut(s) 954
BsnI GGCC 1 cut(s) 1167
Bsp1286I GDGCHC 2 cut(s) 781, 1471
Bsp143I GATC 2 cut(s) 752, 1202
Bsp19I CCATGG 2 cut(s) 1374, 1394
BspACI CCGC 4 cut(s) 991, 1625, 1756, 1759
BspANI GGCC 1 cut(s) 1167
BspCNI CTCAG 7 cut(s) 134, 139, 681, 1175, 1396, 1588, 1691
BspDI ATCGAT 1 cut(s) 1634
BspHI TCATGA 2 cut(s) 186, 532
BspLI GGNNCC 1 cut(s) 1380
BspMAI CTGCAG 3 cut(s) 555, 666, 1008
BspMI ACCTGC 1 cut(s) 558
BspOI GCTAGC 1 cut(s) 791
BspPI GGATC 2 cut(s) 760, 1210
BsrDI GCAATG 3 cut(s) 20, 680, 1325
BsrI ACTGG 3 cut(s) 136, 1472, 1477
BssECI CCNNGG 6 cut(s) 434, 1136, 1374, 1394, 1498, 1499
BssMI GATC 2 cut(s) 752, 1202
BssSI CACGAG 1 cut(s) 48
BssT1I CCWWGG 2 cut(s) 1374, 1394
Bst2BI CACGAG 1 cut(s) 48
Bst2UI CCWGG 3 cut(s) 369, 1137, 1500
Bst4CI ACNGT 1 cut(s) 1014
Bst6I CTCTTC 1 cut(s) 267
BstAPI GCANNNNNTGC 5 cut(s) 15, 493, 1003, 1015, 1691
BstC8I GCNNGC 6 cut(s) 11, 789, 1023, 1169, 1173, 1524
BstDEI CTNAG 8 cut(s) 121, 126, 212, 689, 1162, 1404, 1596, 1678
BstDSI CCRYGG 2 cut(s) 1374, 1394
BstF5I GGATG 3 cut(s) 1128, 1353, 1382
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 2 cut(s) 327, 1045
BstKTI GATC 2 cut(s) 755, 1205
BstMAI GTCTC 3 cut(s) 513, 534, 1108
BstMBI GATC 2 cut(s) 752, 1202
BstNI CCWGG 3 cut(s) 369, 1137, 1500
BstNSI RCATGY 2 cut(s) 13, 140
BstSCI CCNGG 3 cut(s) 367, 1135, 1498
BstSFI CTRYAG 3 cut(s) 551, 662, 1004
BstX2I RGATCY 2 cut(s) 752, 1202
BstYI RGATCY 2 cut(s) 752, 1202
Bsu15I ATCGAT 1 cut(s) 1634
Bsu36I CCTNAGG 1 cut(s) 1162
BsuRI GGCC 1 cut(s) 1167
BsuTUI ATCGAT 1 cut(s) 1634
BtgI CCRYGG 2 cut(s) 1374, 1394
BtsCI GGATG 3 cut(s) 1128, 1353, 1382
BtsI GCAGTG 1 cut(s) 659
BtsIMutI CAGTG 5 cut(s) 636, 659, 722, 781, 1672
BveI ACCTGC 1 cut(s) 558
Cac8I GCNNGC 6 cut(s) 11, 789, 1023, 1169, 1173, 1524
CaiI CAGNNNCTG 2 cut(s) 961, 1003
CciI TCATGA 2 cut(s) 186, 532
CfoI GCGC 2 cut(s) 327, 1045
Cfr13I GGNCC 1 cut(s) 446
ClaI ATCGAT 1 cut(s) 1634
CsiI ACCWGGT 1 cut(s) 367
Csp6I GTAC 3 cut(s) 199, 693, 1538
CspCI CAANNNNNGTGG 2 cut(s) 465, 500
CviQI GTAC 3 cut(s) 199, 693, 1538
DdeI CTNAG 8 cut(s) 121, 126, 212, 689, 1162, 1404, 1596, 1678
DpnI GATC 2 cut(s) 754, 1204
DpnII GATC 2 cut(s) 752, 1202
DraIII CACNNNGTG 1 cut(s) 818
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
EciI GGCGGA 1 cut(s) 1640
Eco130I CCWWGG 2 cut(s) 1374, 1394
Eco32I GATATC 2 cut(s) 642, 1506
Eco47I GGWCC 1 cut(s) 446
Eco57I CTGAAG 6 cut(s) 230, 818, 839, 899, 947, 1223
Eco81I CCTNAGG 1 cut(s) 1162
EcoO109I RGGNCCY 1 cut(s) 446
EcoRI GAATTC 1 cut(s) 676
EcoRII CCWGG 3 cut(s) 367, 1135, 1498
EcoRV GATATC 2 cut(s) 642, 1506
EcoT14I CCWWGG 2 cut(s) 1374, 1394
EcoT22I ATGCAT 1 cut(s) 1687
ErhI CCWWGG 2 cut(s) 1374, 1394
FauI CCCGC 1 cut(s) 1763
FauNDI CATATG 1 cut(s) 1155
FokI GGATG 3 cut(s) 1135, 1340, 1369
FspBI CTAG 3 cut(s) 113, 788, 1771
GlaI GCGC 2 cut(s) 326, 1044
GsaI CCCAGC 3 cut(s) 787, 1434, 1461
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 1 cut(s) 1167
HapII CCGG 2 cut(s) 746, 1040
HhaI GCGC 2 cut(s) 327, 1045
Hin6I GCGC 2 cut(s) 325, 1043
HinP1I GCGC 2 cut(s) 325, 1043
HincII GTYRAC 2 cut(s) 1285, 1569
HindII GTYRAC 2 cut(s) 1285, 1569
HinfI GANTC 8 cut(s) 116, 257, 704, 919, 1294, 1303, 1400, 1676
HpaII CCGG 2 cut(s) 746, 1040
HphI GGTGA 6 cut(s) 161, 357, 463, 1298, 1335, 1632
Hpy166II GTNNAC 4 cut(s) 1285, 1343, 1538, 1569
Hpy188I TCNGA 7 cut(s) 129, 228, 283, 918, 1405, 1442, 1681
Hpy188III TCNNGA 6 cut(s) 113, 187, 533, 708, 1200, 1607
Hpy8I GTNNAC 4 cut(s) 1285, 1343, 1538, 1569
HpyAV CCTTC 7 cut(s) 184, 863, 1230, 1247, 1374, 1422, 1712
HpyCH4III ACNGT 1 cut(s) 1014
HpyF3I CTNAG 8 cut(s) 121, 126, 212, 689, 1162, 1404, 1596, 1678
HspAI GCGC 2 cut(s) 325, 1043
Kzo9I GATC 2 cut(s) 752, 1202
LmnI GCTCC 3 cut(s) 784, 1384, 1466
LweI GCATC 6 cut(s) 1084, 1256, 1520, 1667, 1672, 1703
MabI ACCWGGT 1 cut(s) 367
MaeI CTAG 3 cut(s) 113, 788, 1771
MaeIII GTNAC 4 cut(s) 356, 1591, 1638, 1667
MalI GATC 2 cut(s) 754, 1204
MboI GATC 2 cut(s) 752, 1202
MboII GAAGA 3 cut(s) 254, 1120, 1263
MfeI CAATTG 1 cut(s) 1488
MflI RGATCY 2 cut(s) 752, 1202
MhlI GDGCHC 2 cut(s) 781, 1471
MlyI GAGTC 2 cut(s) 1297, 1670
MmeI TCCRAC 1 cut(s) 784
Mph1103I ATGCAT 1 cut(s) 1687
MseI TTAA 7 cut(s) 42, 420, 846, 890, 1131, 1557, 1620
MslI CAYNNNNRTG 4 cut(s) 141, 1557, 1738, 1741
MspA1I CMGCKG 4 cut(s) 688, 976, 991, 1761
MspI CCGG 2 cut(s) 746, 1040
MspR9I CCNGG 1 cut(s) 369
MunI CAATTG 1 cut(s) 1488
Mva1269I GAATGC 1 cut(s) 954
MvaI CCWGG 3 cut(s) 369, 1137, 1500
NcoI CCATGG 2 cut(s) 1374, 1394
NdeI CATATG 1 cut(s) 1155
NdeII GATC 2 cut(s) 752, 1202
NheI GCTAGC 1 cut(s) 787
NlaIV GGNNCC 1 cut(s) 1380
NmuCI GTSAC 2 cut(s) 1638, 1667
NsiI ATGCAT 1 cut(s) 1687
NspI RCATGY 2 cut(s) 13, 140
PaeI GCATGC 1 cut(s) 13
PagI TCATGA 2 cut(s) 186, 532
PasI CCCWGGG 1 cut(s) 1499
PctI GAATGC 1 cut(s) 954
PfeI GAWTC 6 cut(s) 116, 257, 704, 919, 1294, 1400
PflMI CCANNNNNTGG 2 cut(s) 1395, 1430
PleI GAGTC 2 cut(s) 1297, 1670
PpsI GAGTC 2 cut(s) 1297, 1670
PpuMI RGGWCCY 1 cut(s) 446
PshBI ATTAAT 1 cut(s) 420
Psp5II RGGWCCY 1 cut(s) 446
Psp6I CCWGG 3 cut(s) 367, 1135, 1498
PspFI CCCAGC 3 cut(s) 783, 1430, 1457
PspGI CCWGG 3 cut(s) 367, 1135, 1498
PspN4I GGNNCC 1 cut(s) 1380
PspPI GGNCC 1 cut(s) 446
PspPPI RGGWCCY 1 cut(s) 446
PstI CTGCAG 3 cut(s) 555, 666, 1008
PstNI CAGNNNCTG 2 cut(s) 961, 1003
PsuI RGATCY 2 cut(s) 752, 1202
PvuII CAGCTG 2 cut(s) 688, 976
RsaI GTAC 3 cut(s) 200, 694, 1539
RsaNI GTAC 3 cut(s) 199, 693, 1538
RseI CAYNNNNRTG 4 cut(s) 141, 1557, 1738, 1741
SaqAI TTAA 7 cut(s) 42, 420, 846, 890, 1131, 1557, 1620
Sau3AI GATC 2 cut(s) 752, 1202
Sau96I GGNCC 1 cut(s) 446
ScaI AGTACT 1 cut(s) 200
SchI GAGTC 2 cut(s) 1297, 1670
ScrFI CCNGG 3 cut(s) 369, 1137, 1500
SduI GDGCHC 2 cut(s) 781, 1471
SexAI ACCWGGT 1 cut(s) 367
SfaNI GCATC 6 cut(s) 1084, 1256, 1520, 1667, 1672, 1703
SfcI CTRYAG 3 cut(s) 551, 662, 1004
SinI GGWCC 1 cut(s) 446
SmiMI CAYNNNNRTG 4 cut(s) 141, 1557, 1738, 1741
SmlI CTYRAG 2 cut(s) 290, 519
SmoI CTYRAG 2 cut(s) 290, 519
SphI GCATGC 1 cut(s) 13
SsiI CCGC 4 cut(s) 991, 1625, 1756, 1759
SspI AATATT 1 cut(s) 844
SspMI CTAG 3 cut(s) 113, 788, 1771
StyD4I CCNGG 3 cut(s) 367, 1135, 1498
StyI CCWWGG 2 cut(s) 1374, 1394
TaaI ACNGT 1 cut(s) 1014
TaqI TCGA 2 cut(s) 1586, 1634
TaqII GACCGA 1 cut(s) 448
TatI WGTACW 2 cut(s) 198, 692
TauI GCSGC 2 cut(s) 994, 1761
TfiI GAWTC 6 cut(s) 116, 257, 704, 919, 1294, 1400
Tru1I TTAA 7 cut(s) 42, 420, 846, 890, 1131, 1557, 1620
Tru9I TTAA 7 cut(s) 42, 420, 846, 890, 1131, 1557, 1620
TscAI CASTG 5 cut(s) 636, 666, 729, 781, 1672
TseFI GTSAC 2 cut(s) 1638, 1667
Tsp45I GTSAC 2 cut(s) 1638, 1667
TspRI CASTG 5 cut(s) 636, 666, 729, 781, 1672
Van91I CCANNNNNTGG 2 cut(s) 1395, 1430
VpaK11BI GGWCC 1 cut(s) 446
VspI ATTAAT 1 cut(s) 420
XbaI TCTAGA 1 cut(s) 112
XceI RCATGY 2 cut(s) 13, 140
XspI CTAG 3 cut(s) 113, 788, 1771
ZrmI AGTACT 1 cut(s) 200
Zsp2I ATGCAT 1 cut(s) 1687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.