Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001201

Physical Location & Seq

Genomic Coordinates Reverse (-)

2159091 .. 2162261

Gene Structure 3171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G027600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGATCAGCAAAATCAGTTATATCAATCTCAAAGAGCCCTTCCTGAGACATCATCAACATCTCTAGATTCCACTGCCCAGACTGGACATGCAACTGGTGGTGATTGGCAAGAGGAGGAGGAGGTCTTTCAAAAAATCAAACTCATGAAGGAGATGTACTTACCCGAACTCAGTGAAATATATCAGAAAATTGCTACTAAACTTCAGCAGCATGATTCTCTTCCACAACCGCCAAAATCAGAGCAGCTTGACAAACTGAAAATGCTCAGGACCATGTTAGAGCGCCTCATATCAGTCTTACAGATTTCCAAAAGTAGCATTTCACCTGGTTTGAATTGCAAGTTGTTTTTTTACGAAAAGCAGATAGTAAATTTTATTAATGCCTGCGAAGCCAGTTTCTGCAAGGCATCAATGGACAGCACAGCCGCCCCTCCTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIX_2

Protein Analysis

147

Amino Acids

16.55

Weight (kDa)

5.41

Isoelectric Point (pI)

60.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15772 AT1G15772 AT1G15772 AT1G15772
fragaria_vesca	FvH4_3g37510 FvH4_3g37510 FvH4_3g37510 FvH4_3g37510
malus_domestica	MD02G1272400.v1.1 MD03G1032800.v1.1 MD03G1033000.v1.1 MD03G1033200.v1.1 MD03G1033300.v1.1 MD03G1033600.v1.1 MD03G1033800.v1.1 MD03G1034600.v1.1
prunus_persica	Prupe.6G027600_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.6G027900_v2.0.a1 Prupe.I003700_v2.0.a1
pyrus_communis	pycom02g23320 pycom03g02630 pycom03g02650 pycom03g02660
rosa_chinensis	RchiOBHm_Chr5g0075821
rosa_laevigata	RLG00000036593 RLG00000036596
rosa_multiflora	Rmu_co8383039.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082370
rosa_rugosa	Rorug05G0442800
rosa_samantha	Rh5BG520700 Rh5BG521000 Rh5CG544700 Rh5CG545100 Rh5DG533300
rosa_wichuraiana	Rw5G046390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	230, 426
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	370
AcuI	CTGAAG	1 cut(s)	188
AfaI	GTAC	1 cut(s)	158
AgsI	TTSAA	2 cut(s)	131, 334
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	399
ApeKI	GCWGC	2 cut(s)	208, 244
ApoI	RAATTY	1 cut(s)	370
AseI	ATTAAT	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	270
AsuHPI	GGTGA	2 cut(s)	113, 315
AvaII	GGWCC	1 cut(s)	270
BanII	GRGCYC	1 cut(s)	40
BarI	GAAGNNNNNNTAC	2 cut(s)	140, 172
BbvI	GCAGC	2 cut(s)	220, 256
BciT130I	CCWGG	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	65
BfoI	RGCGCY	1 cut(s)	286
BisI	GCNGC	3 cut(s)	209, 245, 426
BlsI	GCNGC	3 cut(s)	210, 246, 427
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	1 cut(s)	270
BmgT120I	GGNCC	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	1 cut(s)	416
Bpu10I	CCTNAGC	1 cut(s)	266
Bse1I	ACTGG	3 cut(s)	88, 100, 393
BseBI	CCWGG	1 cut(s)	327
BseMII	CTCAG	3 cut(s)	36, 184, 280
BseNI	ACTGG	3 cut(s)	88, 100, 393
BseRI	GAGGAG	3 cut(s)	128, 131, 134
BseXI	GCAGC	2 cut(s)	220, 256
BsmAI	GTCTC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	2 cut(s)	230, 426
BspCNI	CTCAG	3 cut(s)	37, 183, 279
BspHI	TCATGA	1 cut(s)	144
BspPI	GGATC	1 cut(s)	12
BsrI	ACTGG	3 cut(s)	88, 100, 393
BssMI	GATC	1 cut(s)	4
Bst2UI	CCWGG	1 cut(s)	327
Bst6I	CTCTTC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	385
BstDEI	CTNAG	3 cut(s)	45, 170, 266
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNI	CCWGG	1 cut(s)	327
BstNSI	RCATGY	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	325
BstV1I	GCAGC	2 cut(s)	220, 256
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	2 cut(s)	72, 178
Cac8I	GCNNGC	1 cut(s)	385
CaiI	CAGNNNCTG	1 cut(s)	399
CciI	TCATGA	1 cut(s)	144
CfoI	GCGC	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	270
CsiI	ACCWGGT	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	4 cut(s)	89, 145, 212, 274
CviJI	RGCY	4 cut(s)	38, 247, 392, 425
CviKI_1	RGCY	4 cut(s)	38, 247, 392, 425
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	3 cut(s)	45, 170, 266
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	40
FaeI	CATG	4 cut(s)	92, 148, 215, 277
FaiI	YATR	7 cut(s)	22, 90, 146, 181, 213, 275, 290
FatI	CATG	4 cut(s)	88, 144, 211, 273
Fnu4HI	GCNGC	3 cut(s)	209, 245, 426
FriOI	GRGCYC	1 cut(s)	40
Fsp4HI	GCNGC	3 cut(s)	209, 245, 426
FspBI	CTAG	1 cut(s)	65
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	3 cut(s)	209, 245, 426
HaeII	RGCGCY	1 cut(s)	286
HhaI	GCGC	1 cut(s)	285
Hin1II	CATG	4 cut(s)	92, 148, 215, 277
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HinfI	GANTC	2 cut(s)	68, 215
HphI	GGTGA	2 cut(s)	113, 315
Hpy188I	TCNGA	2 cut(s)	186, 241
Hpy188III	TCNNGA	4 cut(s)	44, 65, 145, 268
HpyAV	CCTTC	2 cut(s)	50, 142
HpyCH4V	TGCA	3 cut(s)	92, 339, 402
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	3 cut(s)	45, 170, 266
Hsp92II	CATG	4 cut(s)	92, 148, 215, 277
HspAI	GCGC	1 cut(s)	283
Kzo9I	GATC	1 cut(s)	4
LpnPI	CCDG	9 cut(s)	57, 69, 81, 92, 253, 312, 339, 397, 406
Lsp1109I	GCAGC	2 cut(s)	220, 256
LweI	GCATC	1 cut(s)	416
MabI	ACCWGGT	1 cut(s)	325
MaeI	CTAG	1 cut(s)	65
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	1 cut(s)	212
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	3 cut(s)	189, 334, 370
MnlI	CCTC	6 cut(s)	106, 109, 112, 115, 296, 441
MseI	TTAA	1 cut(s)	378
MspR9I	CCNGG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	1 cut(s)	389
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	4 cut(s)	92, 148, 215, 277
NspI	RCATGY	1 cut(s)	92
PagI	TCATGA	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	68, 215
PkrI	GCNGC	3 cut(s)	210, 246, 427
PshBI	ATTAAT	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspPI	GGNCC	1 cut(s)	270
PstNI	CAGNNNCTG	1 cut(s)	399
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	3 cut(s)	209, 245, 426
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	1 cut(s)	270
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	4 cut(s)	126, 249, 328, 440
SexAI	ACCWGGT	1 cut(s)	325
SfaNI	GCATC	1 cut(s)	416
SinI	GGWCC	1 cut(s)	270
Sse9I	AATT	3 cut(s)	189, 334, 370
SsiI	CCGC	2 cut(s)	230, 426
SspMI	CTAG	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	325
TasI	AATT	3 cut(s)	189, 334, 370
TatI	WGTACW	1 cut(s)	156
TauI	GCSGC	1 cut(s)	428
TfiI	GAWTC	2 cut(s)	68, 215
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	2 cut(s)	79, 178
TseI	GCWGC	2 cut(s)	208, 244
TspDTI	ATGAA	1 cut(s)	161
TspRI	CASTG	2 cut(s)	79, 178
VpaK11BI	GGWCC	1 cut(s)	270
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	1 cut(s)	370
XbaI	TCTAGA	1 cut(s)	64
XceI	RCATGY	1 cut(s)	92
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.