RNA recognition motif
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RRM_1 | PF00076 | 160 - 227 | 3.2e-09 | RNA recognition motif |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 732 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 776 |
| AccBSI | CCGCTC | 1 cut(s) | 499 |
| AciI | CCGC | 6 cut(s) | 107, 116, 365, 499, 718, 1207 |
| AclI | AACGTT | 1 cut(s) | 740 |
| AclWI | GGATC | 5 cut(s) | 450, 587, 669, 712, 1088 |
| AcoI | YGGCCR | 1 cut(s) | 500 |
| AcuI | CTGAAG | 3 cut(s) | 609, 777, 852 |
| AfaI | GTAC | 2 cut(s) | 607, 792 |
| AfeI | AGCGCT | 1 cut(s) | 1156 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 173, 602, 776, 830, 1040, 1241 |
| AflIII | ACRYGT | 1 cut(s) | 321 |
| AgsI | TTSAA | 3 cut(s) | 983, 1077, 1124 |
| AjiI | CACGTC | 2 cut(s) | 306, 324 |
| AjnI | CCWGG | 5 cut(s) | 172, 817, 928, 1228, 1240 |
| AleI | CACNNNNGTG | 1 cut(s) | 1086 |
| AluBI | AGCT | 4 cut(s) | 710, 764, 838, 910 |
| AluI | AGCT | 4 cut(s) | 710, 764, 838, 910 |
| Alw21I | GWGCWC | 1 cut(s) | 840 |
| Alw26I | GTCTC | 1 cut(s) | 257 |
| AlwI | GGATC | 5 cut(s) | 450, 587, 669, 712, 1088 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1145 |
| Aor51HI | AGCGCT | 1 cut(s) | 1156 |
| AoxI | GGCC | 6 cut(s) | 164, 500, 878, 926, 931, 1031 |
| ApeKI | GCWGC | 1 cut(s) | 1139 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 308, 340 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 987 |
| AspLEI | GCGC | 2 cut(s) | 106, 1157 |
| AspS9I | GGNCC | 9 cut(s) | 38, 165, 176, 244, 536, 584, 767, 821, 1232 |
| AsuC2I | CCSGG | 2 cut(s) | 534, 935 |
| AsuHPI | GGTGA | 4 cut(s) | 503, 552, 641, 845 |
| AvaII | GGWCC | 8 cut(s) | 38, 176, 244, 536, 584, 767, 821, 1232 |
| BanII | GRGCYC | 1 cut(s) | 840 |
| BbsI | GAAGAC | 1 cut(s) | 1188 |
| Bbv12I | GWGCWC | 1 cut(s) | 840 |
| BbvI | GCAGC | 1 cut(s) | 1151 |
| BccI | CCATC | 2 cut(s) | 147, 760 |
| BceAI | ACGGC | 1 cut(s) | 535 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1151, 1185 |
| BciT130I | CCWGG | 5 cut(s) | 174, 819, 930, 1230, 1242 |
| BciVI | GTATCC | 4 cut(s) | 680, 682, 973, 1027 |
| BcnI | CCSGG | 2 cut(s) | 534, 935 |
| BcoDI | GTCTC | 1 cut(s) | 257 |
| BfaI | CTAG | 3 cut(s) | 101, 410, 693 |
| BfmI | CTRYAG | 1 cut(s) | 725 |
| BfoI | RGCGCY | 2 cut(s) | 107, 1158 |
| BfuAI | ACCTGC | 1 cut(s) | 732 |
| BfuI | GTATCC | 4 cut(s) | 680, 682, 973, 1027 |
| BisI | GCNGC | 5 cut(s) | 107, 366, 500, 1140, 1208 |
| BlsI | GCNGC | 5 cut(s) | 108, 367, 501, 1141, 1209 |
| Bme1390I | CCNGG | 7 cut(s) | 174, 534, 819, 930, 935, 1230, 1242 |
| Bme18I | GGWCC | 8 cut(s) | 38, 176, 244, 536, 584, 767, 821, 1232 |
| BmgBI | CACGTC | 2 cut(s) | 306, 324 |
| BmgT120I | GGNCC | 9 cut(s) | 38, 165, 176, 244, 536, 584, 767, 821, 1232 |
| BmiI | GGNNCC | 8 cut(s) | 39, 167, 178, 312, 537, 805, 939, 1211 |
| BmrFI | CCNGG | 7 cut(s) | 174, 534, 819, 930, 935, 1230, 1242 |
| BmsI | GCATC | 1 cut(s) | 804 |
| BoxI | GACNNNNGTC | 1 cut(s) | 242 |
| BpiI | GAAGAC | 1 cut(s) | 1188 |
| BpmI | CTGGAG | 1 cut(s) | 939 |
| BpuEI | CTTGAG | 1 cut(s) | 988 |
| BpuMI | CCSGG | 2 cut(s) | 534, 935 |
| BsaBI | GATNNNNATC | 1 cut(s) | 660 |
| BsaJI | CCNNGG | 3 cut(s) | 64, 828, 1228 |
| BsaWI | WCCGGW | 1 cut(s) | 562 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 184, 214 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 173, 602, 776, 830, 1040, 1241 |
| Bse8I | GATNNNNATC | 1 cut(s) | 660 |
| BseBI | CCWGG | 5 cut(s) | 174, 819, 930, 1230, 1242 |
| BseDI | CCNNGG | 3 cut(s) | 64, 828, 1228 |
| BseGI | GGATG | 5 cut(s) | 284, 299, 661, 943, 1183 |
| BseJI | GATNNNNATC | 1 cut(s) | 660 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 173, 602, 776, 830, 1040, 1241 |
| BseMII | CTCAG | 1 cut(s) | 1142 |
| BseRI | GAGGAG | 2 cut(s) | 280, 283 |
| BseXI | GCAGC | 1 cut(s) | 1151 |
| BseYI | CCCAGC | 2 cut(s) | 518, 845 |
| BsgI | GTGCAG | 1 cut(s) | 1158 |
| BshFI | GGCC | 6 cut(s) | 166, 502, 880, 928, 933, 1033 |
| BsiHKAI | GWGCWC | 1 cut(s) | 840 |
| BsiSI | CCGG | 4 cut(s) | 362, 533, 563, 934 |
| BslFI | GGGAC | 4 cut(s) | 162, 427, 448, 549 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 173, 602, 776, 830, 1040, 1241 |
| BsmAI | GTCTC | 1 cut(s) | 257 |
| BsmBI | CGTCTC | 1 cut(s) | 257 |
| BsmFI | GGGAC | 4 cut(s) | 162, 427, 448, 549 |
| BsnI | GGCC | 6 cut(s) | 166, 502, 880, 928, 933, 1033 |
| Bsp1286I | GDGCHC | 1 cut(s) | 840 |
| Bsp143I | GATC | 7 cut(s) | 11, 20, 442, 592, 661, 704, 1093 |
| Bsp19I | CCATGG | 1 cut(s) | 828 |
| BspACI | CCGC | 6 cut(s) | 107, 116, 365, 499, 718, 1207 |
| BspANI | GGCC | 6 cut(s) | 166, 502, 880, 928, 933, 1033 |
| BspCNI | CTCAG | 1 cut(s) | 1143 |
| BspHI | TCATGA | 1 cut(s) | 234 |
| BspLI | GGNNCC | 8 cut(s) | 39, 167, 178, 312, 537, 805, 939, 1211 |
| BspMAI | CTGCAG | 1 cut(s) | 729 |
| BspMI | ACCTGC | 1 cut(s) | 732 |
| BspPI | GGATC | 5 cut(s) | 450, 587, 669, 712, 1088 |
| BsrBI | CCGCTC | 1 cut(s) | 499 |
| BssECI | CCNNGG | 3 cut(s) | 64, 828, 1228 |
| BssMI | GATC | 7 cut(s) | 11, 20, 442, 592, 661, 704, 1093 |
| BssT1I | CCWWGG | 1 cut(s) | 828 |
| Bst2UI | CCWGG | 5 cut(s) | 174, 819, 930, 1230, 1242 |
| Bst4CI | ACNGT | 4 cut(s) | 153, 196, 641, 1102 |
| Bst6I | CTCTTC | 1 cut(s) | 301 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 733, 1145 |
| BstDEI | CTNAG | 1 cut(s) | 1151 |
| BstDSI | CCRYGG | 2 cut(s) | 64, 828 |
| BstF5I | GGATG | 5 cut(s) | 284, 299, 661, 943, 1183 |
| BstH2I | RGCGCY | 2 cut(s) | 107, 1158 |
| BstHHI | GCGC | 2 cut(s) | 106, 1157 |
| BstKTI | GATC | 7 cut(s) | 14, 23, 445, 595, 664, 707, 1096 |
| BstMAI | GTCTC | 1 cut(s) | 257 |
| BstMBI | GATC | 7 cut(s) | 11, 20, 442, 592, 661, 704, 1093 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 115, 163, 374, 733, 1139, 1145, 1154 |
| BstNI | CCWGG | 5 cut(s) | 174, 819, 930, 1230, 1242 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 242 |
| BstSCI | CCNGG | 7 cut(s) | 172, 532, 817, 928, 933, 1228, 1240 |
| BstSFI | CTRYAG | 1 cut(s) | 725 |
| BstV1I | GCAGC | 1 cut(s) | 1151 |
| BstV2I | GAAGAC | 1 cut(s) | 1188 |
| BstX2I | RGATCY | 1 cut(s) | 1093 |
| BstYI | RGATCY | 1 cut(s) | 1093 |
| BsuI | GTATCC | 4 cut(s) | 680, 682, 973, 1027 |
| BsuRI | GGCC | 6 cut(s) | 166, 502, 880, 928, 933, 1033 |
| BtgI | CCRYGG | 2 cut(s) | 64, 828 |
| BtrI | CACGTC | 2 cut(s) | 306, 324 |
| BtsCI | GGATG | 5 cut(s) | 284, 299, 661, 943, 1183 |
| BtsIMutI | CAGTG | 1 cut(s) | 53 |
| BveI | ACCTGC | 1 cut(s) | 732 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1145 |
| CciI | TCATGA | 1 cut(s) | 234 |
| CfoI | GCGC | 2 cut(s) | 106, 1157 |
| Cfr13I | GGNCC | 9 cut(s) | 38, 165, 176, 244, 536, 584, 767, 821, 1232 |
| CsiI | ACCWGGT | 1 cut(s) | 172 |
| Csp6I | GTAC | 2 cut(s) | 606, 791 |
| CviAII | CATG | 8 cut(s) | 34, 235, 347, 515, 787, 811, 829, 841 |
| CviQI | GTAC | 2 cut(s) | 606, 791 |
| DdeI | CTNAG | 1 cut(s) | 1151 |
| DpnI | GATC | 7 cut(s) | 13, 22, 444, 594, 663, 706, 1095 |
| DpnII | GATC | 7 cut(s) | 11, 20, 442, 592, 661, 704, 1093 |
| EaeI | YGGCCR | 1 cut(s) | 500 |
| Eam1104I | CTCTTC | 1 cut(s) | 301 |
| EarI | CTCTTC | 1 cut(s) | 301 |
| Ecl136II | GAGCTC | 1 cut(s) | 838 |
| Eco130I | CCWWGG | 1 cut(s) | 828 |
| Eco24I | GRGCYC | 1 cut(s) | 840 |
| Eco32I | GATATC | 1 cut(s) | 357 |
| Eco47I | GGWCC | 8 cut(s) | 38, 176, 244, 536, 584, 767, 821, 1232 |
| Eco47III | AGCGCT | 1 cut(s) | 1156 |
| Eco53kI | GAGCTC | 1 cut(s) | 838 |
| Eco57I | CTGAAG | 3 cut(s) | 609, 777, 852 |
| EcoICRI | GAGCTC | 1 cut(s) | 838 |
| EcoO109I | RGGNCCY | 1 cut(s) | 536 |
| EcoRII | CCWGG | 5 cut(s) | 172, 817, 928, 1228, 1240 |
| EcoRV | GATATC | 1 cut(s) | 357 |
| EcoT14I | CCWWGG | 1 cut(s) | 828 |
| EcoT38I | GRGCYC | 1 cut(s) | 840 |
| ErhI | CCWWGG | 1 cut(s) | 828 |
| Esp3I | CGTCTC | 1 cut(s) | 257 |
| FaeI | CATG | 8 cut(s) | 37, 238, 350, 518, 790, 814, 832, 844 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1044, 1076 |
| FaqI | GGGAC | 4 cut(s) | 162, 427, 448, 549 |
| FatI | CATG | 8 cut(s) | 33, 234, 346, 514, 786, 810, 828, 840 |
| FauI | CCCGC | 1 cut(s) | 123 |
| Fnu4HI | GCNGC | 5 cut(s) | 107, 366, 500, 1140, 1208 |
| FokI | GGATG | 5 cut(s) | 271, 286, 668, 930, 1190 |
| FriOI | GRGCYC | 1 cut(s) | 840 |
| Fsp4HI | GCNGC | 5 cut(s) | 107, 366, 500, 1140, 1208 |
| FspBI | CTAG | 3 cut(s) | 101, 410, 693 |
| GlaI | GCGC | 2 cut(s) | 105, 1156 |
| GluI | GCNGC | 5 cut(s) | 107, 366, 500, 1140, 1208 |
| GsaI | CCCAGC | 2 cut(s) | 522, 849 |
| GsuI | CTGGAG | 1 cut(s) | 939 |
| HaeII | RGCGCY | 2 cut(s) | 107, 1158 |
| HaeIII | GGCC | 6 cut(s) | 166, 502, 880, 928, 933, 1033 |
| HapII | CCGG | 4 cut(s) | 362, 533, 563, 934 |
| HhaI | GCGC | 2 cut(s) | 106, 1157 |
| Hin1II | CATG | 8 cut(s) | 37, 238, 350, 518, 790, 814, 832, 844 |
| Hin6I | GCGC | 2 cut(s) | 104, 1155 |
| HinP1I | GCGC | 2 cut(s) | 104, 1155 |
| HincII | GTYRAC | 1 cut(s) | 327 |
| HindII | GTYRAC | 1 cut(s) | 327 |
| HinfI | GANTC | 5 cut(s) | 71, 619, 914, 1073, 1193 |
| HpaII | CCGG | 4 cut(s) | 362, 533, 563, 934 |
| HphI | GGTGA | 4 cut(s) | 503, 552, 641, 845 |
| Hpy166II | GTNNAC | 3 cut(s) | 184, 327, 608 |
| Hpy188I | TCNGA | 6 cut(s) | 42, 310, 757, 871, 1152, 1223 |
| Hpy188III | TCNNGA | 7 cut(s) | 24, 88, 235, 467, 890, 956, 1005 |
| Hpy8I | GTNNAC | 3 cut(s) | 184, 327, 608 |
| Hpy99I | CGWCG | 3 cut(s) | 157, 310, 556 |
| HpyAV | CCTTC | 9 cut(s) | 382, 425, 596, 633, 876, 977, 1002, 1002, 1254 |
| HpyCH4III | ACNGT | 4 cut(s) | 153, 196, 641, 1102 |
| HpyCH4IV | ACGT | 4 cut(s) | 250, 305, 323, 740 |
| HpyCH4V | TGCA | 5 cut(s) | 637, 727, 736, 1139, 1162 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 115, 163, 374, 733, 1139, 1145, 1154 |
| HpyF3I | CTNAG | 1 cut(s) | 1151 |
| HpySE526I | ACGT | 4 cut(s) | 250, 305, 323, 740 |
| Hsp92II | CATG | 8 cut(s) | 37, 238, 350, 518, 790, 814, 832, 844 |
| HspAI | GCGC | 2 cut(s) | 104, 1155 |
| Kzo9I | GATC | 7 cut(s) | 11, 20, 442, 592, 661, 704, 1093 |
| LmnI | GCTCC | 1 cut(s) | 1215 |
| Lsp1109I | GCAGC | 1 cut(s) | 1151 |
| LweI | GCATC | 1 cut(s) | 804 |
| MabI | ACCWGGT | 1 cut(s) | 172 |
| MaeI | CTAG | 3 cut(s) | 101, 410, 693 |
| MaeII | ACGT | 4 cut(s) | 250, 305, 323, 740 |
| MaeIII | GTNAC | 3 cut(s) | 196, 379, 1063 |
| MalI | GATC | 7 cut(s) | 13, 22, 444, 594, 663, 706, 1095 |
| MbiI | CCGCTC | 1 cut(s) | 499 |
| MboI | GATC | 7 cut(s) | 11, 20, 442, 592, 661, 704, 1093 |
| MboII | GAAGA | 3 cut(s) | 288, 770, 1193 |
| MflI | RGATCY | 1 cut(s) | 1093 |
| MhlI | GDGCHC | 1 cut(s) | 840 |
| MluCI | AATT | 3 cut(s) | 207, 997, 1214 |
| MmeI | TCCRAC | 5 cut(s) | 271, 288, 403, 831, 990 |
| MroXI | GAANNNNTTC | 1 cut(s) | 987 |
| MseI | TTAA | 1 cut(s) | 774 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1086 |
| MspA1I | CMGCKG | 1 cut(s) | 910 |
| MspI | CCGG | 4 cut(s) | 362, 533, 563, 934 |
| MspR9I | CCNGG | 7 cut(s) | 174, 534, 819, 930, 935, 1230, 1242 |
| MvaI | CCWGG | 5 cut(s) | 174, 819, 930, 1230, 1242 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 115, 163, 374, 733, 1139, 1145, 1154 |
| NciI | CCSGG | 2 cut(s) | 534, 935 |
| NcoI | CCATGG | 1 cut(s) | 828 |
| NdeII | GATC | 7 cut(s) | 11, 20, 442, 592, 661, 704, 1093 |
| NlaIII | CATG | 8 cut(s) | 37, 238, 350, 518, 790, 814, 832, 844 |
| NlaIV | GGNNCC | 8 cut(s) | 39, 167, 178, 312, 537, 805, 939, 1211 |
| NmeAIII | GCCGAG | 1 cut(s) | 142 |
| NmuCI | GTSAC | 1 cut(s) | 1063 |
| OliI | CACNNNNGTG | 1 cut(s) | 1086 |
| PagI | TCATGA | 1 cut(s) | 234 |
| PdmI | GAANNNNTTC | 1 cut(s) | 987 |
| PfeI | GAWTC | 5 cut(s) | 71, 619, 914, 1073, 1193 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 776 |
| PkrI | GCNGC | 5 cut(s) | 108, 367, 501, 1141, 1209 |
| PpuMI | RGGWCCY | 1 cut(s) | 536 |
| PshAI | GACNNNNGTC | 1 cut(s) | 242 |
| Psp124BI | GAGCTC | 1 cut(s) | 840 |
| Psp1406I | AACGTT | 1 cut(s) | 740 |
| Psp5II | RGGWCCY | 1 cut(s) | 536 |
| Psp6I | CCWGG | 5 cut(s) | 172, 817, 928, 1228, 1240 |
| PspFI | CCCAGC | 2 cut(s) | 518, 845 |
| PspGI | CCWGG | 5 cut(s) | 172, 817, 928, 1228, 1240 |
| PspN4I | GGNNCC | 8 cut(s) | 39, 167, 178, 312, 537, 805, 939, 1211 |
| PspPI | GGNCC | 9 cut(s) | 38, 165, 176, 244, 536, 584, 767, 821, 1232 |
| PspPPI | RGGWCCY | 1 cut(s) | 536 |
| PstI | CTGCAG | 1 cut(s) | 729 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1145 |
| PsuI | RGATCY | 1 cut(s) | 1093 |
| PvuII | CAGCTG | 1 cut(s) | 910 |
| RsaI | GTAC | 2 cut(s) | 607, 792 |
| RsaNI | GTAC | 2 cut(s) | 606, 791 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1086 |
| SacI | GAGCTC | 1 cut(s) | 840 |
| SaqAI | TTAA | 1 cut(s) | 774 |
| SatI | GCNGC | 5 cut(s) | 107, 366, 500, 1140, 1208 |
| Sau3AI | GATC | 7 cut(s) | 11, 20, 442, 592, 661, 704, 1093 |
| Sau96I | GGNCC | 9 cut(s) | 38, 165, 176, 244, 536, 584, 767, 821, 1232 |
| ScrFI | CCNGG | 7 cut(s) | 174, 534, 819, 930, 935, 1230, 1242 |
| SduI | GDGCHC | 1 cut(s) | 840 |
| SexAI | ACCWGGT | 1 cut(s) | 172 |
| SfaNI | GCATC | 1 cut(s) | 804 |
| SfcI | CTRYAG | 1 cut(s) | 725 |
| SinI | GGWCC | 8 cut(s) | 38, 176, 244, 536, 584, 767, 821, 1232 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1086 |
| SmlI | CTYRAG | 1 cut(s) | 1003 |
| SmoI | CTYRAG | 1 cut(s) | 1003 |
| Sse9I | AATT | 3 cut(s) | 207, 997, 1214 |
| SsiI | CCGC | 6 cut(s) | 107, 116, 365, 499, 718, 1207 |
| SspI | AATATT | 1 cut(s) | 449 |
| SspMI | CTAG | 3 cut(s) | 101, 410, 693 |
| SstI | GAGCTC | 1 cut(s) | 840 |
| StyD4I | CCNGG | 7 cut(s) | 172, 532, 817, 928, 933, 1228, 1240 |
| StyI | CCWWGG | 1 cut(s) | 828 |
| TaaI | ACNGT | 4 cut(s) | 153, 196, 641, 1102 |
| TaiI | ACGT | 4 cut(s) | 253, 308, 326, 743 |
| TaqI | TCGA | 4 cut(s) | 487, 495, 664, 1171 |
| TasI | AATT | 3 cut(s) | 207, 997, 1214 |
| TauI | GCSGC | 4 cut(s) | 109, 368, 502, 1210 |
| TfiI | GAWTC | 5 cut(s) | 71, 619, 914, 1073, 1193 |
| Tru1I | TTAA | 1 cut(s) | 774 |
| Tru9I | TTAA | 1 cut(s) | 774 |
| TscAI | CASTG | 1 cut(s) | 60 |
| TseFI | GTSAC | 1 cut(s) | 1063 |
| TseI | GCWGC | 1 cut(s) | 1139 |
| Tsp45I | GTSAC | 1 cut(s) | 1063 |
| TspDTI | ATGAA | 3 cut(s) | 223, 288, 1194 |
| TspGWI | ACGGA | 2 cut(s) | 53, 813 |
| TspRI | CASTG | 1 cut(s) | 60 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 776 |
| VpaK11BI | GGWCC | 8 cut(s) | 38, 176, 244, 536, 584, 767, 821, 1232 |
| XmnI | GAANNNNTTC | 1 cut(s) | 987 |
| XspI | CTAG | 3 cut(s) | 101, 410, 693 |