AT1G21320

RNA recognition motif

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
7462327 .. 7466164
3838 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G21320.3

Sequence Viewer

Length: 1266 bp
ATGGATAATAGATCGCCAAGATCAAGAGGAAACATGGGTCCGAAACCAACACCACTGAAAGTCCGTGGAGATTCGCACAAGATTATCAAGAAGCCACCACTAGCGCCGCCACACCCGCAACCACAACCACCACAAACCCATCAGCAAGAACCGTCGCAATCTCGGCCCCCACCTGGTCCCGTGAACATATACACAGTAACTCCCAGAATTATCCATACACACCCTAATAACTTCATGACATTGGTCCAACGTCTCACAGGTCAAACCTCTACCTCCACAACATCATCCTCCTCCTCTTCATCCACGTCGGAACCAAAAGACACGTCAACAATGGTTGATACATCTCATGGGTTGATATCTCCGGCGGCTCGGTTTGCTGTTACAGAGAAGGCTAATATCTCAAACGAACTAGGGACATTTGTTGGAGGCGAAGGGACTATGGATCAATATTATCATCATCATCATCAAGAACAACCACATCAAAATCGAGGGTTCGAGCGGCCAAGTTTTCACCATGCTGGGATTTTATCGCCGGGACCTTATTCTCTGCCGTCGGTATCACCGGACTTCTTTTCCACTATTGGACCAACCGATCCACAAGAAGGTACACCATATTTGATTCCTTCAGGTGATATGCACAGTTATTTATCACAGGATGAGGATCGAGGTATCCCCCATTCAGTAAAGGATACTAGAAGTATTGGATCAGCTTATGACCGCTACCTGCAGAGTATGCAAACGTTTTTTGTGCCATCTGAAGAAGCTGGTCCATTTAATGGTGTTGGCATGGTACGACAAGGAGGTTCCAACATGATGCCTGGTCCGTCCATGGGTGAGCTCATGGCTGGGTGTGGTGGGAGTTTGCCTTCAGATTTCAGGCCAAATGGTCGGGATATGGGTTTTGGTCAGCTGGATTCAGTTGGTAGGCCAGGCCGGGAACCACATCCTCTACCTCCAGATGTATCCAACACTCTGTATGTTGAAGGACTTCCTTCTAATTGCTCAAGAAGGGAAGTATCCCATATATTTCGGCCTTTTGTGGGATATAGAGAAGTAAGACTTGTGACCCAAGATTCAAAACACAGGAGTGGAGATCCTACTGTTCTGTGTTTTGTTGATTTTGAAAACTCTGCCTGTGCAGCAACTGCTCTGAGCGCTTTGCAAGACTATCGAATGGATGAAGACGAACCCGATTCCAAGATTTTGCGGCTCCAATTTTTCAGAAACCCAGGTCCAAGACCAGGACAGCGTGGAGGAAGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

421

Amino Acids

46.16

Weight (kDa)

7.02

Isoelectric Point (pI)

56.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 160 - 227 3.2e-09 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 732
AccB7I CCANNNNNTGG 1 cut(s) 776
AccBSI CCGCTC 1 cut(s) 499
AciI CCGC 6 cut(s) 107, 116, 365, 499, 718, 1207
AclI AACGTT 1 cut(s) 740
AclWI GGATC 5 cut(s) 450, 587, 669, 712, 1088
AcoI YGGCCR 1 cut(s) 500
AcuI CTGAAG 3 cut(s) 609, 777, 852
AfaI GTAC 2 cut(s) 607, 792
AfeI AGCGCT 1 cut(s) 1156
AfiI CCNNNNNNNGG 6 cut(s) 173, 602, 776, 830, 1040, 1241
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 3 cut(s) 983, 1077, 1124
AjiI CACGTC 2 cut(s) 306, 324
AjnI CCWGG 5 cut(s) 172, 817, 928, 1228, 1240
AleI CACNNNNGTG 1 cut(s) 1086
AluBI AGCT 4 cut(s) 710, 764, 838, 910
AluI AGCT 4 cut(s) 710, 764, 838, 910
Alw21I GWGCWC 1 cut(s) 840
Alw26I GTCTC 1 cut(s) 257
AlwI GGATC 5 cut(s) 450, 587, 669, 712, 1088
AlwNI CAGNNNCTG 1 cut(s) 1145
Aor51HI AGCGCT 1 cut(s) 1156
AoxI GGCC 6 cut(s) 164, 500, 878, 926, 931, 1031
ApeKI GCWGC 1 cut(s) 1139
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
Asp700I GAANNNNTTC 1 cut(s) 987
AspLEI GCGC 2 cut(s) 106, 1157
AspS9I GGNCC 9 cut(s) 38, 165, 176, 244, 536, 584, 767, 821, 1232
AsuC2I CCSGG 2 cut(s) 534, 935
AsuHPI GGTGA 4 cut(s) 503, 552, 641, 845
AvaII GGWCC 8 cut(s) 38, 176, 244, 536, 584, 767, 821, 1232
BanII GRGCYC 1 cut(s) 840
BbsI GAAGAC 1 cut(s) 1188
Bbv12I GWGCWC 1 cut(s) 840
BbvI GCAGC 1 cut(s) 1151
BccI CCATC 2 cut(s) 147, 760
BceAI ACGGC 1 cut(s) 535
BcgI CGANNNNNNTGC 2 cut(s) 1151, 1185
BciT130I CCWGG 5 cut(s) 174, 819, 930, 1230, 1242
BciVI GTATCC 4 cut(s) 680, 682, 973, 1027
BcnI CCSGG 2 cut(s) 534, 935
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 3 cut(s) 101, 410, 693
BfmI CTRYAG 1 cut(s) 725
BfoI RGCGCY 2 cut(s) 107, 1158
BfuAI ACCTGC 1 cut(s) 732
BfuI GTATCC 4 cut(s) 680, 682, 973, 1027
BisI GCNGC 5 cut(s) 107, 366, 500, 1140, 1208
BlsI GCNGC 5 cut(s) 108, 367, 501, 1141, 1209
Bme1390I CCNGG 7 cut(s) 174, 534, 819, 930, 935, 1230, 1242
Bme18I GGWCC 8 cut(s) 38, 176, 244, 536, 584, 767, 821, 1232
BmgBI CACGTC 2 cut(s) 306, 324
BmgT120I GGNCC 9 cut(s) 38, 165, 176, 244, 536, 584, 767, 821, 1232
BmiI GGNNCC 8 cut(s) 39, 167, 178, 312, 537, 805, 939, 1211
BmrFI CCNGG 7 cut(s) 174, 534, 819, 930, 935, 1230, 1242
BmsI GCATC 1 cut(s) 804
BoxI GACNNNNGTC 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 1188
BpmI CTGGAG 1 cut(s) 939
BpuEI CTTGAG 1 cut(s) 988
BpuMI CCSGG 2 cut(s) 534, 935
BsaBI GATNNNNATC 1 cut(s) 660
BsaJI CCNNGG 3 cut(s) 64, 828, 1228
BsaWI WCCGGW 1 cut(s) 562
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bsc4I CCNNNNNNNGG 6 cut(s) 173, 602, 776, 830, 1040, 1241
Bse8I GATNNNNATC 1 cut(s) 660
BseBI CCWGG 5 cut(s) 174, 819, 930, 1230, 1242
BseDI CCNNGG 3 cut(s) 64, 828, 1228
BseGI GGATG 5 cut(s) 284, 299, 661, 943, 1183
BseJI GATNNNNATC 1 cut(s) 660
BseLI CCNNNNNNNGG 6 cut(s) 173, 602, 776, 830, 1040, 1241
BseMII CTCAG 1 cut(s) 1142
BseRI GAGGAG 2 cut(s) 280, 283
BseXI GCAGC 1 cut(s) 1151
BseYI CCCAGC 2 cut(s) 518, 845
BsgI GTGCAG 1 cut(s) 1158
BshFI GGCC 6 cut(s) 166, 502, 880, 928, 933, 1033
BsiHKAI GWGCWC 1 cut(s) 840
BsiSI CCGG 4 cut(s) 362, 533, 563, 934
BslFI GGGAC 4 cut(s) 162, 427, 448, 549
BslI CCNNNNNNNGG 6 cut(s) 173, 602, 776, 830, 1040, 1241
BsmAI GTCTC 1 cut(s) 257
BsmBI CGTCTC 1 cut(s) 257
BsmFI GGGAC 4 cut(s) 162, 427, 448, 549
BsnI GGCC 6 cut(s) 166, 502, 880, 928, 933, 1033
Bsp1286I GDGCHC 1 cut(s) 840
Bsp143I GATC 7 cut(s) 11, 20, 442, 592, 661, 704, 1093
Bsp19I CCATGG 1 cut(s) 828
BspACI CCGC 6 cut(s) 107, 116, 365, 499, 718, 1207
BspANI GGCC 6 cut(s) 166, 502, 880, 928, 933, 1033
BspCNI CTCAG 1 cut(s) 1143
BspHI TCATGA 1 cut(s) 234
BspLI GGNNCC 8 cut(s) 39, 167, 178, 312, 537, 805, 939, 1211
BspMAI CTGCAG 1 cut(s) 729
BspMI ACCTGC 1 cut(s) 732
BspPI GGATC 5 cut(s) 450, 587, 669, 712, 1088
BsrBI CCGCTC 1 cut(s) 499
BssECI CCNNGG 3 cut(s) 64, 828, 1228
BssMI GATC 7 cut(s) 11, 20, 442, 592, 661, 704, 1093
BssT1I CCWWGG 1 cut(s) 828
Bst2UI CCWGG 5 cut(s) 174, 819, 930, 1230, 1242
Bst4CI ACNGT 4 cut(s) 153, 196, 641, 1102
Bst6I CTCTTC 1 cut(s) 301
BstAPI GCANNNNNTGC 2 cut(s) 733, 1145
BstDEI CTNAG 1 cut(s) 1151
BstDSI CCRYGG 2 cut(s) 64, 828
BstF5I GGATG 5 cut(s) 284, 299, 661, 943, 1183
BstH2I RGCGCY 2 cut(s) 107, 1158
BstHHI GCGC 2 cut(s) 106, 1157
BstKTI GATC 7 cut(s) 14, 23, 445, 595, 664, 707, 1096
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 7 cut(s) 11, 20, 442, 592, 661, 704, 1093
BstMWI GCNNNNNNNGC 7 cut(s) 115, 163, 374, 733, 1139, 1145, 1154
BstNI CCWGG 5 cut(s) 174, 819, 930, 1230, 1242
BstPAI GACNNNNGTC 1 cut(s) 242
BstSCI CCNGG 7 cut(s) 172, 532, 817, 928, 933, 1228, 1240
BstSFI CTRYAG 1 cut(s) 725
BstV1I GCAGC 1 cut(s) 1151
BstV2I GAAGAC 1 cut(s) 1188
BstX2I RGATCY 1 cut(s) 1093
BstYI RGATCY 1 cut(s) 1093
BsuI GTATCC 4 cut(s) 680, 682, 973, 1027
BsuRI GGCC 6 cut(s) 166, 502, 880, 928, 933, 1033
BtgI CCRYGG 2 cut(s) 64, 828
BtrI CACGTC 2 cut(s) 306, 324
BtsCI GGATG 5 cut(s) 284, 299, 661, 943, 1183
BtsIMutI CAGTG 1 cut(s) 53
BveI ACCTGC 1 cut(s) 732
CaiI CAGNNNCTG 1 cut(s) 1145
CciI TCATGA 1 cut(s) 234
CfoI GCGC 2 cut(s) 106, 1157
Cfr13I GGNCC 9 cut(s) 38, 165, 176, 244, 536, 584, 767, 821, 1232
CsiI ACCWGGT 1 cut(s) 172
Csp6I GTAC 2 cut(s) 606, 791
CviAII CATG 8 cut(s) 34, 235, 347, 515, 787, 811, 829, 841
CviQI GTAC 2 cut(s) 606, 791
DdeI CTNAG 1 cut(s) 1151
DpnI GATC 7 cut(s) 13, 22, 444, 594, 663, 706, 1095
DpnII GATC 7 cut(s) 11, 20, 442, 592, 661, 704, 1093
EaeI YGGCCR 1 cut(s) 500
Eam1104I CTCTTC 1 cut(s) 301
EarI CTCTTC 1 cut(s) 301
Ecl136II GAGCTC 1 cut(s) 838
Eco130I CCWWGG 1 cut(s) 828
Eco24I GRGCYC 1 cut(s) 840
Eco32I GATATC 1 cut(s) 357
Eco47I GGWCC 8 cut(s) 38, 176, 244, 536, 584, 767, 821, 1232
Eco47III AGCGCT 1 cut(s) 1156
Eco53kI GAGCTC 1 cut(s) 838
Eco57I CTGAAG 3 cut(s) 609, 777, 852
EcoICRI GAGCTC 1 cut(s) 838
EcoO109I RGGNCCY 1 cut(s) 536
EcoRII CCWGG 5 cut(s) 172, 817, 928, 1228, 1240
EcoRV GATATC 1 cut(s) 357
EcoT14I CCWWGG 1 cut(s) 828
EcoT38I GRGCYC 1 cut(s) 840
ErhI CCWWGG 1 cut(s) 828
Esp3I CGTCTC 1 cut(s) 257
FaeI CATG 8 cut(s) 37, 238, 350, 518, 790, 814, 832, 844
FalI AAGNNNNNCTT 2 cut(s) 1044, 1076
FaqI GGGAC 4 cut(s) 162, 427, 448, 549
FatI CATG 8 cut(s) 33, 234, 346, 514, 786, 810, 828, 840
FauI CCCGC 1 cut(s) 123
Fnu4HI GCNGC 5 cut(s) 107, 366, 500, 1140, 1208
FokI GGATG 5 cut(s) 271, 286, 668, 930, 1190
FriOI GRGCYC 1 cut(s) 840
Fsp4HI GCNGC 5 cut(s) 107, 366, 500, 1140, 1208
FspBI CTAG 3 cut(s) 101, 410, 693
GlaI GCGC 2 cut(s) 105, 1156
GluI GCNGC 5 cut(s) 107, 366, 500, 1140, 1208
GsaI CCCAGC 2 cut(s) 522, 849
GsuI CTGGAG 1 cut(s) 939
HaeII RGCGCY 2 cut(s) 107, 1158
HaeIII GGCC 6 cut(s) 166, 502, 880, 928, 933, 1033
HapII CCGG 4 cut(s) 362, 533, 563, 934
HhaI GCGC 2 cut(s) 106, 1157
Hin1II CATG 8 cut(s) 37, 238, 350, 518, 790, 814, 832, 844
Hin6I GCGC 2 cut(s) 104, 1155
HinP1I GCGC 2 cut(s) 104, 1155
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HinfI GANTC 5 cut(s) 71, 619, 914, 1073, 1193
HpaII CCGG 4 cut(s) 362, 533, 563, 934
HphI GGTGA 4 cut(s) 503, 552, 641, 845
Hpy166II GTNNAC 3 cut(s) 184, 327, 608
Hpy188I TCNGA 6 cut(s) 42, 310, 757, 871, 1152, 1223
Hpy188III TCNNGA 7 cut(s) 24, 88, 235, 467, 890, 956, 1005
Hpy8I GTNNAC 3 cut(s) 184, 327, 608
Hpy99I CGWCG 3 cut(s) 157, 310, 556
HpyAV CCTTC 9 cut(s) 382, 425, 596, 633, 876, 977, 1002, 1002, 1254
HpyCH4III ACNGT 4 cut(s) 153, 196, 641, 1102
HpyCH4IV ACGT 4 cut(s) 250, 305, 323, 740
HpyCH4V TGCA 5 cut(s) 637, 727, 736, 1139, 1162
HpyF10VI GCNNNNNNNGC 7 cut(s) 115, 163, 374, 733, 1139, 1145, 1154
HpyF3I CTNAG 1 cut(s) 1151
HpySE526I ACGT 4 cut(s) 250, 305, 323, 740
Hsp92II CATG 8 cut(s) 37, 238, 350, 518, 790, 814, 832, 844
HspAI GCGC 2 cut(s) 104, 1155
Kzo9I GATC 7 cut(s) 11, 20, 442, 592, 661, 704, 1093
LmnI GCTCC 1 cut(s) 1215
Lsp1109I GCAGC 1 cut(s) 1151
LweI GCATC 1 cut(s) 804
MabI ACCWGGT 1 cut(s) 172
MaeI CTAG 3 cut(s) 101, 410, 693
MaeII ACGT 4 cut(s) 250, 305, 323, 740
MaeIII GTNAC 3 cut(s) 196, 379, 1063
MalI GATC 7 cut(s) 13, 22, 444, 594, 663, 706, 1095
MbiI CCGCTC 1 cut(s) 499
MboI GATC 7 cut(s) 11, 20, 442, 592, 661, 704, 1093
MboII GAAGA 3 cut(s) 288, 770, 1193
MflI RGATCY 1 cut(s) 1093
MhlI GDGCHC 1 cut(s) 840
MluCI AATT 3 cut(s) 207, 997, 1214
MmeI TCCRAC 5 cut(s) 271, 288, 403, 831, 990
MroXI GAANNNNTTC 1 cut(s) 987
MseI TTAA 1 cut(s) 774
MslI CAYNNNNRTG 1 cut(s) 1086
MspA1I CMGCKG 1 cut(s) 910
MspI CCGG 4 cut(s) 362, 533, 563, 934
MspR9I CCNGG 7 cut(s) 174, 534, 819, 930, 935, 1230, 1242
MvaI CCWGG 5 cut(s) 174, 819, 930, 1230, 1242
MwoI GCNNNNNNNGC 7 cut(s) 115, 163, 374, 733, 1139, 1145, 1154
NciI CCSGG 2 cut(s) 534, 935
NcoI CCATGG 1 cut(s) 828
NdeII GATC 7 cut(s) 11, 20, 442, 592, 661, 704, 1093
NlaIII CATG 8 cut(s) 37, 238, 350, 518, 790, 814, 832, 844
NlaIV GGNNCC 8 cut(s) 39, 167, 178, 312, 537, 805, 939, 1211
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 1063
OliI CACNNNNGTG 1 cut(s) 1086
PagI TCATGA 1 cut(s) 234
PdmI GAANNNNTTC 1 cut(s) 987
PfeI GAWTC 5 cut(s) 71, 619, 914, 1073, 1193
PflMI CCANNNNNTGG 1 cut(s) 776
PkrI GCNGC 5 cut(s) 108, 367, 501, 1141, 1209
PpuMI RGGWCCY 1 cut(s) 536
PshAI GACNNNNGTC 1 cut(s) 242
Psp124BI GAGCTC 1 cut(s) 840
Psp1406I AACGTT 1 cut(s) 740
Psp5II RGGWCCY 1 cut(s) 536
Psp6I CCWGG 5 cut(s) 172, 817, 928, 1228, 1240
PspFI CCCAGC 2 cut(s) 518, 845
PspGI CCWGG 5 cut(s) 172, 817, 928, 1228, 1240
PspN4I GGNNCC 8 cut(s) 39, 167, 178, 312, 537, 805, 939, 1211
PspPI GGNCC 9 cut(s) 38, 165, 176, 244, 536, 584, 767, 821, 1232
PspPPI RGGWCCY 1 cut(s) 536
PstI CTGCAG 1 cut(s) 729
PstNI CAGNNNCTG 1 cut(s) 1145
PsuI RGATCY 1 cut(s) 1093
PvuII CAGCTG 1 cut(s) 910
RsaI GTAC 2 cut(s) 607, 792
RsaNI GTAC 2 cut(s) 606, 791
RseI CAYNNNNRTG 1 cut(s) 1086
SacI GAGCTC 1 cut(s) 840
SaqAI TTAA 1 cut(s) 774
SatI GCNGC 5 cut(s) 107, 366, 500, 1140, 1208
Sau3AI GATC 7 cut(s) 11, 20, 442, 592, 661, 704, 1093
Sau96I GGNCC 9 cut(s) 38, 165, 176, 244, 536, 584, 767, 821, 1232
ScrFI CCNGG 7 cut(s) 174, 534, 819, 930, 935, 1230, 1242
SduI GDGCHC 1 cut(s) 840
SexAI ACCWGGT 1 cut(s) 172
SfaNI GCATC 1 cut(s) 804
SfcI CTRYAG 1 cut(s) 725
SinI GGWCC 8 cut(s) 38, 176, 244, 536, 584, 767, 821, 1232
SmiMI CAYNNNNRTG 1 cut(s) 1086
SmlI CTYRAG 1 cut(s) 1003
SmoI CTYRAG 1 cut(s) 1003
Sse9I AATT 3 cut(s) 207, 997, 1214
SsiI CCGC 6 cut(s) 107, 116, 365, 499, 718, 1207
SspI AATATT 1 cut(s) 449
SspMI CTAG 3 cut(s) 101, 410, 693
SstI GAGCTC 1 cut(s) 840
StyD4I CCNGG 7 cut(s) 172, 532, 817, 928, 933, 1228, 1240
StyI CCWWGG 1 cut(s) 828
TaaI ACNGT 4 cut(s) 153, 196, 641, 1102
TaiI ACGT 4 cut(s) 253, 308, 326, 743
TaqI TCGA 4 cut(s) 487, 495, 664, 1171
TasI AATT 3 cut(s) 207, 997, 1214
TauI GCSGC 4 cut(s) 109, 368, 502, 1210
TfiI GAWTC 5 cut(s) 71, 619, 914, 1073, 1193
Tru1I TTAA 1 cut(s) 774
Tru9I TTAA 1 cut(s) 774
TscAI CASTG 1 cut(s) 60
TseFI GTSAC 1 cut(s) 1063
TseI GCWGC 1 cut(s) 1139
Tsp45I GTSAC 1 cut(s) 1063
TspDTI ATGAA 3 cut(s) 223, 288, 1194
TspGWI ACGGA 2 cut(s) 53, 813
TspRI CASTG 1 cut(s) 60
Van91I CCANNNNNTGG 1 cut(s) 776
VpaK11BI GGWCC 8 cut(s) 38, 176, 244, 536, 584, 767, 821, 1232
XmnI GAANNNNTTC 1 cut(s) 987
XspI CTAG 3 cut(s) 101, 410, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.