RchiOBHm_Chr6g0276391

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001021
Physical Location & Seq
Reverse (-)
38425730 .. 38430204
4475 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24794

Sequence Viewer

Length: 726 bp
ATGGCGGACAGCCTCTGGAACCGTCAGCGGCAACTGCTTCCTTCCGGTGGTGATAAACGACCCCGTTCTGACTACGACCTCCCAACGTCTGGTCTGTATTCAGGTCATGAGATGCGTAGCTATTTAGCACGGGATGATGATCTTGGTGGTCCTAGGGCTGTAAAGGATACAAAATCAATTGGATCAGCATATGACCGTTATCTTCAAAATGGGAAGCAAGTGTCTTCAGATACCATGGTTGGAGTTGCATTGGGGAGGCCTGTCAGTGGTGGAATGGCTGATCATTCTATGATTGGTCGCCCTGGGGCTGTTGCTTCGGATTTTATTAGTAGTCGAAATATTCATCTTGCTCAGCTCCCAGTGGATGCAATGCCTAGACTAGCACCTGGACGTGAAACAGCTCCTTTACCCCCAGATGCTACCAACACTTTATACATTGAAGGACTTCCTCCTGACAGCACGAGGAGGGAAGTAGCTCATATTTTTCGCCCCTTTGTGGGATATAAAGAAGTGAGGCTTGTGAGCAAAGAGTCCAAACTTCGTGGTGGTGATCCCCTTATCCTTTGTTTTGTGGATTTTGTAAATCCAGCCTGTGCTGCAACTGCCATGAGTGCTTTGCAAGGTTATAAAATGGATGAACACAATCCTGATTCTAACTACTTGCGGCTGCAGTTTTCTCGATTGCCAGGTCCAAGGTCTGGACATGGAACCCGTAGTAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010494 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010862 GO:0016070 GO:0016071 GO:0017069 GO:0019219 GO:0019220 GO:0019222 GO:0023051 GO:0023056 GO:0030532 GO:0030619 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0034641 GO:0035613 GO:0035614 GO:0035770 GO:0036464 GO:0042325 GO:0042327 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0045937 GO:0046483 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0060255 GO:0060390 GO:0060391 GO:0060393 GO:0065007 GO:0070013 GO:0070717 GO:0071704 GO:0080090 GO:0090092 GO:0090100 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

241

Amino Acids

26.37

Weight (kDa)

9.39

Isoelectric Point (pI)

59.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 144 - 214 1.2e-09 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 627
AccB7I CCANNNNNTGG 2 cut(s) 89, 698
AciI CCGC 3 cut(s) 5, 28, 664
AclWI GGATC 2 cut(s) 190, 545
AcuI CTGAAG 1 cut(s) 210
AfiI CCNNNNNNNGG 6 cut(s) 47, 89, 266, 496, 497, 698
AgsI TTSAA 2 cut(s) 206, 440
AjiI CACGTC 1 cut(s) 392
AjnI CCWGG 3 cut(s) 301, 385, 685
AluBI AGCT 4 cut(s) 120, 355, 401, 476
AluI AGCT 4 cut(s) 120, 355, 401, 476
AlwI GGATC 2 cut(s) 190, 545
AlwNI CAGNNNCTG 1 cut(s) 15
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 2 cut(s) 596, 667
Asp700I GAANNNNTTC 1 cut(s) 444
AspA2I CCTAGG 1 cut(s) 152
AspS9I GGNCC 2 cut(s) 149, 689
AsuHPI GGTGA 2 cut(s) 62, 560
AvaII GGWCC 2 cut(s) 149, 689
AvrII CCTAGG 1 cut(s) 152
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
BauI CACGAG 1 cut(s) 460
BbsI GAAGAC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 583, 654
BcgI CGANNNNNNTGC 2 cut(s) 659, 693
BciT130I CCWGG 3 cut(s) 303, 387, 687
BciVI GTATCC 1 cut(s) 160
BclI TGATCA 1 cut(s) 280
BfaI CTAG 3 cut(s) 153, 375, 380
BfmI CTRYAG 1 cut(s) 668
BfuI GTATCC 1 cut(s) 160
BisI GCNGC 4 cut(s) 29, 597, 665, 668
BlnI CCTAGG 1 cut(s) 152
BlpI GCTNAGC 1 cut(s) 351
BlsI GCNGC 4 cut(s) 30, 598, 666, 669
Bme1390I CCNGG 3 cut(s) 303, 387, 687
Bme18I GGWCC 2 cut(s) 149, 689
BmgBI CACGTC 1 cut(s) 392
BmgT120I GGNCC 2 cut(s) 149, 689
BmiI GGNNCC 2 cut(s) 20, 709
BmrFI CCNGG 3 cut(s) 303, 387, 687
BmrI ACTGGG 1 cut(s) 353
BmsI GCATC 3 cut(s) 102, 355, 406
BmuI ACTGGG 1 cut(s) 353
BpiI GAAGAC 1 cut(s) 216
Bpu1102I GCTNAGC 1 cut(s) 351
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 5 cut(s) 152, 234, 301, 302, 692
BsaWI WCCGGW 1 cut(s) 44
Bsc4I CCNNNNNNNGG 6 cut(s) 47, 89, 266, 496, 497, 698
Bse1I ACTGG 1 cut(s) 359
Bse3DI GCAATG 1 cut(s) 375
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 3 cut(s) 303, 387, 687
BseDI CCNNGG 5 cut(s) 152, 234, 301, 302, 692
BseGI GGATG 3 cut(s) 139, 370, 640
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 6 cut(s) 47, 89, 266, 496, 497, 698
BseMI GCAATG 1 cut(s) 375
BseMII CTCAG 1 cut(s) 365
BseNI ACTGG 1 cut(s) 359
BseRI GAGGAG 1 cut(s) 478
BseXI GCAGC 2 cut(s) 583, 654
BshFI GGCC 1 cut(s) 259
BsiSI CCGG 1 cut(s) 45
BslI CCNNNNNNNGG 6 cut(s) 47, 89, 266, 496, 497, 698
BsnI GGCC 1 cut(s) 259
Bsp143I GATC 4 cut(s) 139, 182, 280, 550
Bsp1720I GCTNAGC 1 cut(s) 351
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 3 cut(s) 5, 28, 664
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 1 cut(s) 364
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 20, 709
BspMAI CTGCAG 1 cut(s) 672
BspPI GGATC 2 cut(s) 190, 545
BsrDI GCAATG 1 cut(s) 375
BsrI ACTGG 1 cut(s) 359
BssECI CCNNGG 5 cut(s) 152, 234, 301, 302, 692
BssMI GATC 4 cut(s) 139, 182, 280, 550
BssSI CACGAG 1 cut(s) 460
BssT1I CCWWGG 3 cut(s) 152, 234, 692
Bst2BI CACGAG 1 cut(s) 460
Bst2UI CCWGG 3 cut(s) 303, 387, 687
Bst4CI ACNGT 2 cut(s) 23, 197
BstDEI CTNAG 1 cut(s) 351
BstDSI CCRYGG 1 cut(s) 234
BstF5I GGATG 3 cut(s) 139, 370, 640
BstKTI GATC 4 cut(s) 142, 185, 283, 553
BstMBI GATC 4 cut(s) 139, 182, 280, 550
BstMWI GCNNNNNNNGC 4 cut(s) 34, 596, 602, 611
BstNI CCWGG 3 cut(s) 303, 387, 687
BstSCI CCNGG 3 cut(s) 301, 385, 685
BstSFI CTRYAG 1 cut(s) 668
BstV1I GCAGC 2 cut(s) 583, 654
BstV2I GAAGAC 1 cut(s) 216
BsuI GTATCC 1 cut(s) 160
BsuRI GGCC 1 cut(s) 259
BtgI CCRYGG 1 cut(s) 234
BtrI CACGTC 1 cut(s) 392
BtsCI GGATG 3 cut(s) 139, 370, 640
BtsIMutI CAGTG 2 cut(s) 271, 366
CaiI CAGNNNCTG 1 cut(s) 15
CciI TCATGA 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 149, 689
CspCI CAANNNNNGTGG 2 cut(s) 523, 558
CviAII CATG 4 cut(s) 107, 235, 607, 704
DdeI CTNAG 1 cut(s) 351
DpnI GATC 4 cut(s) 141, 184, 282, 552
DpnII GATC 4 cut(s) 139, 182, 280, 550
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 3 cut(s) 152, 234, 692
Eco147I AGGCCT 1 cut(s) 259
Eco47I GGWCC 2 cut(s) 149, 689
Eco57I CTGAAG 1 cut(s) 210
EcoRII CCWGG 3 cut(s) 301, 385, 685
EcoT14I CCWWGG 3 cut(s) 152, 234, 692
ErhI CCWWGG 3 cut(s) 152, 234, 692
FaeI CATG 4 cut(s) 110, 238, 610, 707
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FatI CATG 4 cut(s) 106, 234, 606, 703
FauNDI CATATG 1 cut(s) 190
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 4 cut(s) 29, 597, 665, 668
FokI GGATG 3 cut(s) 146, 377, 647
Fsp4HI GCNGC 4 cut(s) 29, 597, 665, 668
FspBI CTAG 3 cut(s) 153, 375, 380
GluI GCNGC 4 cut(s) 29, 597, 665, 668
HaeIII GGCC 1 cut(s) 259
HapII CCGG 1 cut(s) 45
Hin1II CATG 4 cut(s) 110, 238, 610, 707
HinfI GANTC 2 cut(s) 530, 650
HpaII CCGG 1 cut(s) 45
HphI GGTGA 2 cut(s) 62, 560
Hpy188I TCNGA 3 cut(s) 70, 229, 319
Hpy188III TCNNGA 6 cut(s) 16, 107, 452, 647, 678, 699
HpyAV CCTTC 2 cut(s) 51, 434
HpyCH4III ACNGT 2 cut(s) 23, 197
HpyCH4IV ACGT 2 cut(s) 86, 391
HpyCH4V TGCA 5 cut(s) 248, 368, 599, 619, 670
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 596, 602, 611
HpyF3I CTNAG 1 cut(s) 351
HpySE526I ACGT 2 cut(s) 86, 391
Hsp92II CATG 4 cut(s) 110, 238, 610, 707
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 4 cut(s) 139, 182, 280, 550
LmnI GCTCC 2 cut(s) 360, 406
Lsp1109I GCAGC 2 cut(s) 583, 654
LweI GCATC 3 cut(s) 102, 355, 406
MaeI CTAG 3 cut(s) 153, 375, 380
MaeII ACGT 2 cut(s) 86, 391
MalI GATC 4 cut(s) 141, 184, 282, 552
MboI GATC 4 cut(s) 139, 182, 280, 550
MboII GAAGA 2 cut(s) 194, 216
MfeI CAATTG 1 cut(s) 177
MluCI AATT 1 cut(s) 177
MlyI GAGTC 1 cut(s) 539
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 7 cut(s) 23, 89, 249, 456, 459, 459, 507
MroXI GAANNNNTTC 1 cut(s) 444
MspA1I CMGCKG 1 cut(s) 28
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 3 cut(s) 303, 387, 687
MunI CAATTG 1 cut(s) 177
MvaI CCWGG 3 cut(s) 303, 387, 687
MwoI GCNNNNNNNGC 4 cut(s) 34, 596, 602, 611
NcoI CCATGG 1 cut(s) 234
NdeI CATATG 1 cut(s) 190
NdeII GATC 4 cut(s) 139, 182, 280, 550
NlaIII CATG 4 cut(s) 110, 238, 610, 707
NlaIV GGNNCC 2 cut(s) 20, 709
PagI TCATGA 1 cut(s) 106
PasI CCCWGGG 1 cut(s) 302
PceI AGGCCT 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 1 cut(s) 650
PflMI CCANNNNNTGG 2 cut(s) 89, 698
PkrI GCNGC 4 cut(s) 30, 598, 666, 669
PleI GAGTC 1 cut(s) 538
PpsI GAGTC 1 cut(s) 538
PsiI TTATAA 1 cut(s) 627
Psp6I CCWGG 3 cut(s) 301, 385, 685
PspGI CCWGG 3 cut(s) 301, 385, 685
PspN4I GGNNCC 2 cut(s) 20, 709
PspPI GGNCC 2 cut(s) 149, 689
PstI CTGCAG 1 cut(s) 672
PstNI CAGNNNCTG 1 cut(s) 15
SatI GCNGC 4 cut(s) 29, 597, 665, 668
Sau3AI GATC 4 cut(s) 139, 182, 280, 550
Sau96I GGNCC 2 cut(s) 149, 689
SchI GAGTC 1 cut(s) 539
ScrFI CCNGG 3 cut(s) 303, 387, 687
SfaNI GCATC 3 cut(s) 102, 355, 406
SfcI CTRYAG 1 cut(s) 668
SinI GGWCC 2 cut(s) 149, 689
Sse9I AATT 1 cut(s) 177
SseBI AGGCCT 1 cut(s) 259
SsiI CCGC 3 cut(s) 5, 28, 664
SspI AATATT 1 cut(s) 340
SspMI CTAG 3 cut(s) 153, 375, 380
StuI AGGCCT 1 cut(s) 259
StyD4I CCNGG 3 cut(s) 301, 385, 685
StyI CCWWGG 3 cut(s) 152, 234, 692
TaaI ACNGT 2 cut(s) 23, 197
TaiI ACGT 2 cut(s) 89, 394
TaqI TCGA 2 cut(s) 334, 679
TasI AATT 1 cut(s) 177
TauI GCSGC 2 cut(s) 31, 667
TfiI GAWTC 1 cut(s) 650
TscAI CASTG 2 cut(s) 271, 366
TseI GCWGC 2 cut(s) 596, 667
TspDTI ATGAA 2 cut(s) 332, 651
TspRI CASTG 2 cut(s) 271, 366
Van91I CCANNNNNTGG 2 cut(s) 89, 698
VpaK11BI GGWCC 2 cut(s) 149, 689
XmaJI CCTAGG 1 cut(s) 152
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 3 cut(s) 153, 375, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.