Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001021

Physical Location & Seq

Genomic Coordinates Reverse (-)

7468765 .. 7469995

Gene Structure 1231 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G21326.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGATAATAGATCGCCAAGATCAAGAGGAATCTTGGGTCCGAGACCAATACCATTGAAAGTCCGTGGAGATTCGCACAAGATCATCAAGAAGCCACCACTAGCGCCGCCACACCCGCAACCACAACCACCACAAACCCATCAGCAAGAACCGTCACAATCGCGGCCGCCACCTGGTCCCGTGATTATATACACAGTATCTCCCAGGATTATCCATACACACCCTAATAACTTCATGACATTGGTCCAACGTCTCACAGGTAAAACCTCCACCTCCACAACATCCTCCTCCTATTCTTCATCTACGTCAGCACCAAAAGACGCGTCAACAATGGTTGATACATCTCATGGGTTGATATCTCCGGCGGCTCGGTTTGCTGTTACAGAGAAGGCTAATATCTCAAACGAACTAGGGACATTTGTTGGAGGCGAAGGGACTATGGATCAATATTATCATTATCATCATCATCATCATCATCAAGAACAACAACATCAAAATCAAGGGTTCGAGCGGCCAAGTTTCCACCATGCTGGGATTTTATCGCCGGGACCTAATTCTCTGCCGTCGGTATCACCGGACTTCTTTTCCACTATTGGACCAACCGATCCACAAGGTTTTTCGTCGTTCTTTAATGACTTTAACTCTATCCTTCAGAGTAGTCCATCGAAGATTCAGTCTCCTTCTTCTATGGACCTTTTCAACAATTTCTTTGATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0008150 GO:0010769 GO:0022603 GO:0022604 GO:0040008 GO:0043900 GO:0045595 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051510 GO:0060284 GO:0065007 GO:0080092 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Protein Analysis

239

Amino Acids

26.29

Weight (kDa)

8.93

Isoelectric Point (pI)

66.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	65 - 92	1.9e-12	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21320 AT1G21320 AT1G21320 AT1G21320 AT1G21320 AT1G21326 AT1G76940 AT1G76940 AT1G76940
fragaria_vesca	FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_7g32221 FvH4_7g32221
malus_domestica	MD01G1224900.v1.1 MD05G1020700.v1.1 MD07G1295500.v1.1 MD10G1021500.v1.1 MD10G1021600.v1.1
prunus_persica	Prupe.2G315000_v2.0.a1 Prupe.2G315000_v2.0.a1 Prupe.2G315000_v2.0.a1 Prupe.8G024700_v2.0.a1 Prupe.8G024700_v2.0.a1 Prupe.8G024700_v2.0.a1
pyrus_communis	pycom01g23350 pycom05g01200 pycom07g26810 pycom10g01470 pycom10g01480
rosa_chinensis	RchiOBHm_Chr1g0381871 RchiOBHm_Chr6g0276391
rosa_laevigata	RLG00000013397 RLG00000026202
rosa_multiflora	Rmu_sc0004126.1_g000019 Rmu_sc0004248.1_g000007 Rmu_sc0010238.1_g000008
rosa_roxburghii	Rroxscaffold_4G00278360 Rroxscaffold_7G00192260
rosa_rugosa	Rorug01G0432000 Rorug06G0101200
rosa_samantha	Rh1AG455100 Rh1BG412300 Rh1CG427000 Rh1DG444600 Rh6AG211900 Rh6BG216100 Rh6CG218400 Rh6CG218800 Rh6DG208300
rosa_wichuraiana	Rw1G041390 Rw1G041460 Rw6G018500 Rw6G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	511
AccII	CGCG	2 cut(s)	163, 323
AciI	CCGC	6 cut(s)	107, 116, 163, 167, 365, 511
AclWI	GGATC	2 cut(s)	450, 599
AcoI	YGGCCR	2 cut(s)	164, 512
AcuI	CTGAAG	1 cut(s)	635
AfiI	CCNNNNNNNGG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	321
AgsI	TTSAA	2 cut(s)	58, 700
AjnI	CCWGG	2 cut(s)	172, 203
Alw26I	GTCTC	3 cut(s)	37, 257, 681
AlwI	GGATC	2 cut(s)	450, 599
AoxI	GGCC	2 cut(s)	164, 512
ArsI	GACNNNNNNTTYG	4 cut(s)	308, 340, 659, 691
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	6 cut(s)	38, 176, 244, 548, 596, 691
AsuC2I	CCSGG	1 cut(s)	546
AsuHPI	GGTGA	1 cut(s)	564
AvaII	GGWCC	6 cut(s)	38, 176, 244, 548, 596, 691
BccI	CCATC	2 cut(s)	147, 670
BceAI	ACGGC	1 cut(s)	547
BciT130I	CCWGG	2 cut(s)	174, 205
BcnI	CCSGG	1 cut(s)	546
BcoDI	GTCTC	3 cut(s)	37, 257, 681
BfaI	CTAG	2 cut(s)	101, 410
BfoI	RGCGCY	1 cut(s)	107
BisI	GCNGC	5 cut(s)	107, 164, 167, 366, 512
BlsI	GCNGC	5 cut(s)	108, 165, 168, 367, 513
Bme1390I	CCNGG	3 cut(s)	174, 205, 546
Bme18I	GGWCC	6 cut(s)	38, 176, 244, 548, 596, 691
BmgT120I	GGNCC	6 cut(s)	38, 176, 244, 548, 596, 691
BmiI	GGNNCC	3 cut(s)	39, 178, 549
BmrFI	CCNGG	3 cut(s)	174, 205, 546
BoxI	GACNNNNGTC	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	546
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	2 cut(s)	64, 203
BsaWI	WCCGGW	1 cut(s)	574
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
BseBI	CCWGG	2 cut(s)	174, 205
BseDI	CCNNGG	2 cut(s)	64, 203
BseGI	GGATG	1 cut(s)	281
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseRI	GAGGAG	1 cut(s)	277
BseX3I	CGGCCG	1 cut(s)	164
BseYI	CCCAGC	1 cut(s)	530
Bsh1236I	CGCG	2 cut(s)	163, 323
Bsh1285I	CGRYCG	1 cut(s)	167
BshFI	GGCC	2 cut(s)	166, 514
BsiEI	CGRYCG	1 cut(s)	167
BsiSI	CCGG	3 cut(s)	362, 545, 575
BslFI	GGGAC	4 cut(s)	162, 427, 448, 561
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	3 cut(s)	37, 257, 681
BsmBI	CGTCTC	1 cut(s)	257
BsmFI	GGGAC	4 cut(s)	162, 427, 448, 561
BsnI	GGCC	2 cut(s)	166, 514
Bso31I	GGTCTC	1 cut(s)	37
Bsp143I	GATC	5 cut(s)	11, 20, 81, 442, 604
BspACI	CCGC	6 cut(s)	107, 116, 163, 167, 365, 511
BspANI	GGCC	2 cut(s)	166, 514
BspFNI	CGCG	2 cut(s)	163, 323
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	3 cut(s)	39, 178, 549
BspPI	GGATC	2 cut(s)	450, 599
BspTNI	GGTCTC	1 cut(s)	37
BsrBI	CCGCTC	1 cut(s)	511
BssECI	CCNNGG	2 cut(s)	64, 203
BssMI	GATC	5 cut(s)	11, 20, 81, 442, 604
Bst2UI	CCWGG	2 cut(s)	174, 205
Bst4CI	ACNGT	2 cut(s)	153, 196
BstDSI	CCRYGG	1 cut(s)	64
BstF5I	GGATG	1 cut(s)	281
BstFNI	CGCG	2 cut(s)	163, 323
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	5 cut(s)	14, 23, 84, 445, 607
BstMAI	GTCTC	3 cut(s)	37, 257, 681
BstMBI	GATC	5 cut(s)	11, 20, 81, 442, 604
BstMCI	CGRYCG	1 cut(s)	167
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 374
BstNI	CCWGG	2 cut(s)	174, 205
BstPAI	GACNNNNGTC	1 cut(s)	242
BstSCI	CCNGG	3 cut(s)	172, 203, 544
BstUI	CGCG	2 cut(s)	163, 323
BstXI	CCANNNNNNTGG	1 cut(s)	530
BstZI	CGGCCG	1 cut(s)	164
BsuRI	GGCC	2 cut(s)	166, 514
BtgI	CCRYGG	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	281
CciI	TCATGA	1 cut(s)	234
CciNI	GCGGCCGC	1 cut(s)	164
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	6 cut(s)	38, 176, 244, 548, 596, 691
CseI	GACGC	2 cut(s)	312, 329
CsiI	ACCWGGT	1 cut(s)	172
CviAII	CATG	3 cut(s)	235, 347, 527
CviJI	RGCY	5 cut(s)	94, 166, 368, 392, 514
CviKI_1	RGCY	5 cut(s)	94, 166, 368, 392, 514
DpnI	GATC	5 cut(s)	13, 22, 83, 444, 606
DpnII	GATC	5 cut(s)	11, 20, 81, 442, 604
EaeI	YGGCCR	2 cut(s)	164, 512
EagI	CGGCCG	1 cut(s)	164
EclXI	CGGCCG	1 cut(s)	164
Eco31I	GGTCTC	1 cut(s)	37
Eco32I	GATATC	1 cut(s)	357
Eco47I	GGWCC	6 cut(s)	38, 176, 244, 548, 596, 691
Eco52I	CGGCCG	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	635
EcoO109I	RGGNCCY	1 cut(s)	548
EcoRII	CCWGG	2 cut(s)	172, 203
EcoRV	GATATC	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	3 cut(s)	238, 350, 530
FaiI	YATR	8 cut(s)	188, 190, 216, 236, 348, 440, 528, 689
FaqI	GGGAC	4 cut(s)	162, 427, 448, 561
FatI	CATG	3 cut(s)	234, 346, 526
FauI	CCCGC	1 cut(s)	123
Fnu4HI	GCNGC	5 cut(s)	107, 164, 167, 366, 512
FokI	GGATG	1 cut(s)	268
Fsp4HI	GCNGC	5 cut(s)	107, 164, 167, 366, 512
FspBI	CTAG	2 cut(s)	101, 410
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	5 cut(s)	107, 164, 167, 366, 512
GsaI	CCCAGC	1 cut(s)	534
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	166, 514
HapII	CCGG	3 cut(s)	362, 545, 575
HgaI	GACGC	2 cut(s)	312, 329
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	3 cut(s)	238, 350, 530
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HinfI	GANTC	4 cut(s)	30, 71, 670, 713
HpaII	CCGG	3 cut(s)	362, 545, 575
HphI	GGTGA	1 cut(s)	564
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	2 cut(s)	42, 654
Hpy188III	TCNNGA	5 cut(s)	24, 88, 235, 479, 717
Hpy8I	GTNNAC	1 cut(s)	327
Hpy99I	CGWCG	2 cut(s)	568, 625
HpyAV	CCTTC	4 cut(s)	382, 425, 659, 690
HpyCH4III	ACNGT	2 cut(s)	153, 196
HpyCH4IV	ACGT	2 cut(s)	250, 305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 374
HpySE526I	ACGT	2 cut(s)	250, 305
Hsp92II	CATG	3 cut(s)	238, 350, 530
HspAI	GCGC	1 cut(s)	104
Kzo9I	GATC	5 cut(s)	11, 20, 81, 442, 604
LpnPI	CCDG	9 cut(s)	159, 186, 190, 217, 243, 375, 516, 558, 588
MabI	ACCWGGT	1 cut(s)	172
MaeI	CTAG	2 cut(s)	101, 410
MaeII	ACGT	2 cut(s)	250, 305
MaeIII	GTNAC	2 cut(s)	153, 379
MalI	GATC	5 cut(s)	13, 22, 83, 444, 606
MbiI	CCGCTC	1 cut(s)	511
MboI	GATC	5 cut(s)	11, 20, 81, 442, 604
MboII	GAAGA	3 cut(s)	288, 675, 679
MluCI	AATT	2 cut(s)	553, 703
MluI	ACGCGT	1 cut(s)	321
MmeI	TCCRAC	2 cut(s)	271, 403
MnlI	CCTC	6 cut(s)	20, 277, 283, 295, 298, 419
MseI	TTAA	2 cut(s)	630, 639
MspI	CCGG	3 cut(s)	362, 545, 575
MspR9I	CCNGG	3 cut(s)	174, 205, 546
MvaI	CCWGG	2 cut(s)	174, 205
MvnI	CGCG	2 cut(s)	163, 323
MwoI	GCNNNNNNNGC	2 cut(s)	115, 374
NciI	CCSGG	1 cut(s)	546
NdeII	GATC	5 cut(s)	11, 20, 81, 442, 604
NlaIII	CATG	3 cut(s)	238, 350, 530
NlaIV	GGNNCC	3 cut(s)	39, 178, 549
NmuCI	GTSAC	1 cut(s)	153
NotI	GCGGCCGC	1 cut(s)	164
PagI	TCATGA	1 cut(s)	234
PfeI	GAWTC	4 cut(s)	30, 71, 670, 713
PkrI	GCNGC	5 cut(s)	108, 165, 168, 367, 513
PpuMI	RGGWCCY	1 cut(s)	548
PshAI	GACNNNNGTC	1 cut(s)	242
Psp5II	RGGWCCY	1 cut(s)	548
Psp6I	CCWGG	2 cut(s)	172, 203
PspFI	CCCAGC	1 cut(s)	530
PspGI	CCWGG	2 cut(s)	172, 203
PspN4I	GGNNCC	3 cut(s)	39, 178, 549
PspPI	GGNCC	6 cut(s)	38, 176, 244, 548, 596, 691
PspPPI	RGGWCCY	1 cut(s)	548
SaqAI	TTAA	2 cut(s)	630, 639
SatI	GCNGC	5 cut(s)	107, 164, 167, 366, 512
Sau3AI	GATC	5 cut(s)	11, 20, 81, 442, 604
Sau96I	GGNCC	6 cut(s)	38, 176, 244, 548, 596, 691
ScrFI	CCNGG	3 cut(s)	174, 205, 546
SetI	ASST	9 cut(s)	175, 253, 262, 269, 275, 308, 553, 616, 696
SexAI	ACCWGGT	1 cut(s)	172
SinI	GGWCC	6 cut(s)	38, 176, 244, 548, 596, 691
Sse9I	AATT	2 cut(s)	553, 703
SsiI	CCGC	6 cut(s)	107, 116, 163, 167, 365, 511
SspI	AATATT	1 cut(s)	449
SspMI	CTAG	2 cut(s)	101, 410
StyD4I	CCNGG	3 cut(s)	172, 203, 544
TaaI	ACNGT	2 cut(s)	153, 196
TaiI	ACGT	2 cut(s)	253, 308
TaqI	TCGA	2 cut(s)	507, 665
TasI	AATT	2 cut(s)	553, 703
TauI	GCSGC	5 cut(s)	109, 166, 169, 368, 514
TfiI	GAWTC	4 cut(s)	30, 71, 670, 713
Tru1I	TTAA	2 cut(s)	630, 639
Tru9I	TTAA	2 cut(s)	630, 639
TseFI	GTSAC	1 cut(s)	153
Tsp45I	GTSAC	1 cut(s)	153
TspDTI	ATGAA	2 cut(s)	223, 288
TspGWI	ACGGA	1 cut(s)	53
VpaK11BI	GGWCC	6 cut(s)	38, 176, 244, 548, 596, 691
XspI	CTAG	2 cut(s)	101, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.