MD10G1021500.v1.1

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0001021
Physical Location & Seq
Forward (+)
2675879 .. 2680939
5061 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1021500.v1.1.491

Sequence Viewer

Length: 747 bp
ATGGGGGACGGCCTATGGAACCGCCAGCAGCAGCAGCAGCAGCAGCATCAACTGGGTCCCTCTGGCGGCGTGCATAAACGACCTCGTTCCGACTACGGTCAAGAGATGCATGGTTATTTTGCGCGAGAGGATGATCTTGGTGGTCCTAGGACTGTAAAGGATAACAGATCAATCGGATCAGCATATGACCGTTATCTTCAGAATGCGGAAATGGCTTCGTACACTTCTGGAGAAGCGAGTACTTTTGGTGGAGCTGGAATGGGAAGGGCTGTTGGTGGTGGAATGACAGGTCCTCCAATGGCTGATCATTCTATGAGGGGCCGTCCTGGAGCTATGTCTTCTGATGTACTAACAAATGGTCGAAATATGAATCTTGCTAATCAGCTCCCAGTTGATTCAATGCCTAGGCCTGGACGTGAAACAGTTCCTTTACCTCTGGATGCATCCAGCACTTTATATGTTGAAGGACTTCCTCCTGACAGCACAAGGAGGGAAGTAGCTCATATCTTTCGTCCTTTTGTGGGATACAAAGCAGTGAGGCTTGTGAGCAAAGAGTCCAAACACCGTGGCGGGGATCCTCTTATTCTTTGTTTTGTGGATTTTGAAAATCCAGCCTGTGCAGCAACTGCTCTGAGTGCCTTGCAAGGTTATGAAATGGATGAACATGCTCCTGATTCTAATTACTTGCGGCTGCAGTTTTCTCGGTTCCCTGGTCCTAGGTCTGGACCTGGCCGTAACAAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010494 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010862 GO:0016070 GO:0016071 GO:0017069 GO:0019219 GO:0019220 GO:0019222 GO:0023051 GO:0023056 GO:0030532 GO:0030619 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0034641 GO:0035613 GO:0035614 GO:0035770 GO:0036464 GO:0042325 GO:0042327 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0045937 GO:0046483 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0060255 GO:0060390 GO:0060391 GO:0060393 GO:0065007 GO:0070013 GO:0070717 GO:0071704 GO:0080090 GO:0090092 GO:0090100 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

249

Amino Acids

27.05

Weight (kDa)

8.9

Isoelectric Point (pI)

56.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 152 - 222 1.9e-10 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 124
AciI CCGC 5 cut(s) 22, 66, 206, 570, 688
AclWI GGATC 3 cut(s) 184, 569, 582
AcoI YGGCCR 1 cut(s) 730
AcuI CTGAAG 1 cut(s) 182
AfaI GTAC 3 cut(s) 221, 241, 348
AfiI CCNNNNNNNGG 5 cut(s) 65, 410, 521, 571, 722
AgsI TTSAA 3 cut(s) 399, 464, 605
AjiI CACGTC 1 cut(s) 416
AjnI CCWGG 4 cut(s) 325, 409, 709, 727
AluBI AGCT 4 cut(s) 254, 332, 385, 500
AluI AGCT 4 cut(s) 254, 332, 385, 500
AlwI GGATC 3 cut(s) 184, 569, 582
AlwNI CAGNNNCTG 1 cut(s) 626
AoxI GGCC 4 cut(s) 10, 319, 407, 730
ApeKI GCWGC 8 cut(s) 28, 31, 34, 37, 40, 43, 620, 691
Asp700I GAANNNNTTC 2 cut(s) 423, 468
AspA2I CCTAGG 3 cut(s) 146, 404, 716
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 6 cut(s) 56, 143, 290, 319, 713, 725
AvaII GGWCC 5 cut(s) 56, 143, 290, 713, 725
AvrII CCTAGG 3 cut(s) 146, 404, 716
BamHI GGATCC 1 cut(s) 574
BbsI GAAGAC 1 cut(s) 330
BbvI GCAGC 8 cut(s) 40, 43, 46, 49, 52, 55, 632, 678
BceAI ACGGC 3 cut(s) 25, 306, 717
BcgI CGANNNNNNTGC 2 cut(s) 683, 717
BciT130I CCWGG 4 cut(s) 327, 411, 711, 729
BciVI GTATCC 1 cut(s) 518
BclI TGATCA 1 cut(s) 304
BfaI CTAG 3 cut(s) 147, 405, 717
BfmI CTRYAG 1 cut(s) 692
BfuI GTATCC 1 cut(s) 518
BlnI CCTAGG 3 cut(s) 146, 404, 716
BmcAI AGTACT 1 cut(s) 241
Bme1390I CCNGG 4 cut(s) 327, 411, 711, 729
Bme18I GGWCC 5 cut(s) 56, 143, 290, 713, 725
BmgBI CACGTC 1 cut(s) 416
BmgT120I GGNCC 6 cut(s) 56, 143, 290, 319, 713, 725
BmiI GGNNCC 6 cut(s) 20, 57, 58, 320, 576, 707
BmrFI CCNGG 4 cut(s) 327, 411, 711, 729
BmrI ACTGGG 2 cut(s) 62, 383
BmsI GCATC 4 cut(s) 55, 96, 430, 452
BmuI ACTGGG 2 cut(s) 62, 383
BoxI GACNNNNGTC 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 330
BpmI CTGGAG 2 cut(s) 249, 348
BsaJI CCNNGG 5 cut(s) 146, 404, 565, 709, 716
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
Bsc4I CCNNNNNNNGG 5 cut(s) 65, 410, 521, 571, 722
Bse1I ACTGG 2 cut(s) 57, 389
BseBI CCWGG 4 cut(s) 327, 411, 711, 729
BseDI CCNNGG 5 cut(s) 146, 404, 565, 709, 716
BseGI GGATG 4 cut(s) 136, 443, 445, 664
BseLI CCNNNNNNNGG 5 cut(s) 65, 410, 521, 571, 722
BseMII CTCAG 1 cut(s) 623
BseNI ACTGG 2 cut(s) 57, 389
BseXI GCAGC 8 cut(s) 40, 43, 46, 49, 52, 55, 632, 678
BsgI GTGCAG 1 cut(s) 639
Bsh1236I CGCG 1 cut(s) 124
BshFI GGCC 4 cut(s) 12, 321, 409, 732
BslFI GGGAC 2 cut(s) 20, 42
BslI CCNNNNNNNGG 5 cut(s) 65, 410, 521, 571, 722
BsmFI GGGAC 2 cut(s) 20, 42
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 4 cut(s) 12, 321, 409, 732
Bsp143I GATC 5 cut(s) 133, 167, 176, 304, 574
BspACI CCGC 5 cut(s) 22, 66, 206, 570, 688
BspANI GGCC 4 cut(s) 12, 321, 409, 732
BspCNI CTCAG 1 cut(s) 624
BspFNI CGCG 1 cut(s) 124
BspLI GGNNCC 6 cut(s) 20, 57, 58, 320, 576, 707
BspMAI CTGCAG 1 cut(s) 696
BspPI GGATC 3 cut(s) 184, 569, 582
BsrI ACTGG 2 cut(s) 57, 389
BssECI CCNNGG 5 cut(s) 146, 404, 565, 709, 716
BssMI GATC 5 cut(s) 133, 167, 176, 304, 574
BssT1I CCWWGG 3 cut(s) 146, 404, 716
Bst2UI CCWGG 4 cut(s) 327, 411, 711, 729
Bst4CI ACNGT 5 cut(s) 98, 154, 191, 424, 566
BstAPI GCANNNNNTGC 1 cut(s) 626
BstC8I GCNNGC 2 cut(s) 26, 71
BstDEI CTNAG 1 cut(s) 632
BstDSI CCRYGG 1 cut(s) 565
BstF5I GGATG 4 cut(s) 136, 443, 445, 664
BstFNI CGCG 1 cut(s) 124
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 5 cut(s) 136, 170, 179, 307, 577
BstMBI GATC 5 cut(s) 133, 167, 176, 304, 574
BstMWI GCNNNNNNNGC 8 cut(s) 34, 37, 40, 43, 212, 620, 626, 635
BstNI CCWGG 4 cut(s) 327, 411, 711, 729
BstNSI RCATGY 1 cut(s) 668
BstPAI GACNNNNGTC 1 cut(s) 96
BstSCI CCNGG 4 cut(s) 325, 409, 709, 727
BstSFI CTRYAG 1 cut(s) 692
BstUI CGCG 1 cut(s) 124
BstV1I GCAGC 8 cut(s) 40, 43, 46, 49, 52, 55, 632, 678
BstV2I GAAGAC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 574
BstYI RGATCY 1 cut(s) 574
BsuI GTATCC 1 cut(s) 518
BsuRI GGCC 4 cut(s) 12, 321, 409, 732
BtgI CCRYGG 1 cut(s) 565
BtrI CACGTC 1 cut(s) 416
BtsCI GGATG 4 cut(s) 136, 443, 445, 664
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 1 cut(s) 540
Cac8I GCNNGC 2 cut(s) 26, 71
CaiI CAGNNNCTG 1 cut(s) 626
CfoI GCGC 1 cut(s) 124
Cfr13I GGNCC 6 cut(s) 56, 143, 290, 319, 713, 725
Csp6I GTAC 3 cut(s) 220, 240, 347
CspCI CAANNNNNGTGG 2 cut(s) 547, 582
CviAII CATG 2 cut(s) 110, 665
CviQI GTAC 3 cut(s) 220, 240, 347
DdeI CTNAG 1 cut(s) 632
DpnI GATC 5 cut(s) 135, 169, 178, 306, 576
DpnII GATC 5 cut(s) 133, 167, 176, 304, 574
EaeI YGGCCR 1 cut(s) 730
Eco130I CCWWGG 3 cut(s) 146, 404, 716
Eco147I AGGCCT 1 cut(s) 409
Eco47I GGWCC 5 cut(s) 56, 143, 290, 713, 725
Eco57I CTGAAG 1 cut(s) 182
EcoO109I RGGNCCY 2 cut(s) 56, 290
EcoRII CCWGG 4 cut(s) 325, 409, 709, 727
EcoT14I CCWWGG 3 cut(s) 146, 404, 716
EcoT22I ATGCAT 2 cut(s) 111, 445
ErhI CCWWGG 3 cut(s) 146, 404, 716
FaeI CATG 2 cut(s) 113, 668
FaqI GGGAC 2 cut(s) 20, 42
FatI CATG 2 cut(s) 109, 664
FauI CCCGC 1 cut(s) 563
FauNDI CATATG 1 cut(s) 184
FbaI TGATCA 1 cut(s) 304
FokI GGATG 4 cut(s) 143, 430, 452, 671
FspBI CTAG 3 cut(s) 147, 405, 717
GlaI GCGC 1 cut(s) 123
GsuI CTGGAG 2 cut(s) 249, 348
HaeIII GGCC 4 cut(s) 12, 321, 409, 732
HhaI GCGC 1 cut(s) 124
Hin1II CATG 2 cut(s) 113, 668
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HinfI GANTC 4 cut(s) 370, 395, 554, 674
Hpy166II GTNNAC 1 cut(s) 222
Hpy188I TCNGA 5 cut(s) 91, 176, 201, 343, 633
Hpy188III TCNNGA 6 cut(s) 101, 228, 437, 476, 671, 723
Hpy8I GTNNAC 1 cut(s) 222
HpyAV CCTTC 2 cut(s) 258, 458
HpyCH4III ACNGT 5 cut(s) 98, 154, 191, 424, 566
HpyCH4IV ACGT 1 cut(s) 415
HpyCH4V TGCA 6 cut(s) 73, 109, 443, 620, 643, 694
HpyF10VI GCNNNNNNNGC 8 cut(s) 34, 37, 40, 43, 212, 620, 626, 635
HpyF3I CTNAG 1 cut(s) 632
HpySE526I ACGT 1 cut(s) 415
Hsp92II CATG 2 cut(s) 113, 668
HspAI GCGC 1 cut(s) 122
KflI GGGWCCC 1 cut(s) 56
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 5 cut(s) 133, 167, 176, 304, 574
LmnI GCTCC 4 cut(s) 251, 329, 390, 673
Lsp1109I GCAGC 8 cut(s) 40, 43, 46, 49, 52, 55, 632, 678
LweI GCATC 4 cut(s) 55, 96, 430, 452
MaeI CTAG 3 cut(s) 147, 405, 717
MaeII ACGT 1 cut(s) 415
MaeIII GTNAC 1 cut(s) 734
MalI GATC 5 cut(s) 135, 169, 178, 306, 576
MboI GATC 5 cut(s) 133, 167, 176, 304, 574
MboII GAAGA 2 cut(s) 188, 330
MflI RGATCY 1 cut(s) 574
MluCI AATT 1 cut(s) 679
MlyI GAGTC 1 cut(s) 563
MmeI TCCRAC 1 cut(s) 114
Mph1103I ATGCAT 2 cut(s) 111, 445
MroXI GAANNNNTTC 2 cut(s) 423, 468
MspR9I CCNGG 4 cut(s) 327, 411, 711, 729
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 4 cut(s) 327, 411, 711, 729
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 8 cut(s) 34, 37, 40, 43, 212, 620, 626, 635
NdeI CATATG 1 cut(s) 184
NdeII GATC 5 cut(s) 133, 167, 176, 304, 574
NlaIII CATG 2 cut(s) 113, 668
NlaIV GGNNCC 6 cut(s) 20, 57, 58, 320, 576, 707
NsiI ATGCAT 2 cut(s) 111, 445
NspI RCATGY 1 cut(s) 668
PceI AGGCCT 1 cut(s) 409
PctI GAATGC 1 cut(s) 208
PdmI GAANNNNTTC 2 cut(s) 423, 468
PfeI GAWTC 3 cut(s) 370, 395, 674
PfoI TCCNGGA 1 cut(s) 325
PleI GAGTC 1 cut(s) 562
PpsI GAGTC 1 cut(s) 562
PpuMI RGGWCCY 2 cut(s) 56, 290
PshAI GACNNNNGTC 1 cut(s) 96
Psp5II RGGWCCY 2 cut(s) 56, 290
Psp6I CCWGG 4 cut(s) 325, 409, 709, 727
PspGI CCWGG 4 cut(s) 325, 409, 709, 727
PspN4I GGNNCC 6 cut(s) 20, 57, 58, 320, 576, 707
PspPI GGNCC 6 cut(s) 56, 143, 290, 319, 713, 725
PspPPI RGGWCCY 2 cut(s) 56, 290
PstI CTGCAG 1 cut(s) 696
PstNI CAGNNNCTG 1 cut(s) 626
PsuI RGATCY 1 cut(s) 574
RsaI GTAC 3 cut(s) 221, 241, 348
RsaNI GTAC 3 cut(s) 220, 240, 347
Sau3AI GATC 5 cut(s) 133, 167, 176, 304, 574
Sau96I GGNCC 6 cut(s) 56, 143, 290, 319, 713, 725
ScaI AGTACT 1 cut(s) 241
SchI GAGTC 1 cut(s) 563
ScrFI CCNGG 4 cut(s) 327, 411, 711, 729
SfaNI GCATC 4 cut(s) 55, 96, 430, 452
SfcI CTRYAG 1 cut(s) 692
SinI GGWCC 5 cut(s) 56, 143, 290, 713, 725
Sse9I AATT 1 cut(s) 679
SseBI AGGCCT 1 cut(s) 409
SsiI CCGC 5 cut(s) 22, 66, 206, 570, 688
SspMI CTAG 3 cut(s) 147, 405, 717
StuI AGGCCT 1 cut(s) 409
StyD4I CCNGG 4 cut(s) 325, 409, 709, 727
StyI CCWWGG 3 cut(s) 146, 404, 716
TaaI ACNGT 5 cut(s) 98, 154, 191, 424, 566
TaiI ACGT 1 cut(s) 418
TaqI TCGA 1 cut(s) 361
TasI AATT 1 cut(s) 679
TatI WGTACW 2 cut(s) 239, 346
TauI GCSGC 2 cut(s) 69, 691
TfiI GAWTC 3 cut(s) 370, 395, 674
TscAI CASTG 1 cut(s) 540
TseI GCWGC 8 cut(s) 28, 31, 34, 37, 40, 43, 620, 691
TspDTI ATGAA 3 cut(s) 383, 666, 675
TspRI CASTG 1 cut(s) 540
VpaK11BI GGWCC 5 cut(s) 56, 143, 290, 713, 725
XceI RCATGY 1 cut(s) 668
XmaJI CCTAGG 3 cut(s) 146, 404, 716
XmnI GAANNNNTTC 2 cut(s) 423, 468
XspI CTAG 3 cut(s) 147, 405, 717
ZrmI AGTACT 1 cut(s) 241
Zsp2I ATGCAT 2 cut(s) 111, 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.