Rorug01G0432000

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001021
Physical Location & Seq
Forward (+)
53034258 .. 53039879
5622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0432000.1

Sequence Viewer

Length: 1506 bp
ATGGATTTTCTTTCCACTGCTGCACCTACCATAGTAATAATTTTAGCAGTAATTCTTTTACCGGTAATTTTTTGGCCGTTGAAGAACAAGAGATACCCACCTGTTGCCGGAACTATCATACACCTATTTAAATATCGCTTCAAGCTGCACGATTACTTCACTGAGCTTGCATGCAATTACAAAACATACAGGATAAGTGTCTTGTTCAAATATATAGTTTTCACAGCAGATCCTGCAAATGTTGAATACTTGCTCAAGACGAACTTTGCAAACTATGGCAAGGGAGAGTACGTGCACAGCCTCATATCAGATGTTGTAGGCGACGGGATCTTCTCTGTGGATGGGGAAAAATGGCGGCATCAGAGGAAGACATCAAGCTCTCACTTCTCAACAAAAATACTTAGAGAGTTTAGCAGTGAAATCTTCAAGACCAATGCAGTAAAGCTTGCTGGCATAATTCATGAAGCTGCAACCCGTGACGAATCAATAGAGATGCAAGATTTGTTTATGAAATCAACCTTGGATTCAATCGTCAAGATTCTACTTGGTTTCGATCTAGGCACCATGTTGAAAACAAACAATGAAGAAAGTATCCGGTTTTCCAATGCTTTTGACGCTGGAAACGCAGCTTCCCTTTTTCGTGTTGGTGATATCGTGTGGAAGATCAAACGGTTCTTGAACATTGGTACAGAAGCAATGCTAAGAGAACATATGAAAGTGGTGGATCAATTTATATACAAATTAATCAACAAAAAGATTGAAAGAGTCCATAATCCAGAAGATGATGATGAGCTACCTCTAAAGAAAAAAGACTTCGTCTCCAGGCTTTTAGAAACTTGTGAGACTGATCCAAAGTACTTGAGAGACATAGTCCTCACTTTTATTGCTGCCGGCAAAGACACAACTGCTTCTGCTCTTTCATGGTTTTTCTATATGATGTGCAAACATCTTGATATACAAGAAAAGATTGCACAGGAAGTTAGAGAAGCAACAGGCCTAAATAATAGTTCAAGCGTTGATGAAGTTGCAGCCAACCTTACTGAAGAAGCGCTTAACAAAATGCAATATCTCCATGCAGCTTTGAATGAGACGCTCAGACTCTATCCCACAGTTCCAATGAATGCGAGGGTTTGTTTTTCTGATGATGTCTGGCCAGATGGATATAGTGTCAAGAAAGGGCAATTGGTGATATTCCAACCTTATTCAATGGGTCGTATGAAGTTTATATGGGGTGATGATGCAGAAGAGTTTCGACCAGAAAGATGGCTTGACGAAAATGGCAATTTTCAGGAAGAAAGCCCTTTTAAATTCCTGGCCTTCAATGCCGGCCCAAGAATTTGTATGGGAAAAGACTATAGTTTTATCCTGATGAAGATCTTTGCTGCTGTGCTTTTAAACAACTACACATTCAAGCTCAGTGACGAGAAAAAAGTTGTCAAATACAAGATGATGGTCACACTCCATATCAATAAAGGCCTTAATGTTCATGCATCTCCAAGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

501

Amino Acids

57.62

Weight (kDa)

8.05

Isoelectric Point (pI)

30.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 39 - 488 9.5e-78 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 560
AciI CCGC 1 cut(s) 355
AclWI GGATC 4 cut(s) 224, 335, 732, 842
AcoI YGGCCR 2 cut(s) 74, 1151
AcsI RAATTY 3 cut(s) 1307, 1335, 1500
AcuI CTGAAG 1 cut(s) 1062
AfaI GTAC 3 cut(s) 290, 688, 857
AfeI AGCGCT 1 cut(s) 1050
AfiI CCNNNNNNNGG 1 cut(s) 107
AgeI ACCGGT 1 cut(s) 61
AjnI CCWGG 2 cut(s) 821, 1311
AjuI GAANNNNNNNTTGG 4 cut(s) 503, 535, 1166, 1198
AluBI AGCT 9 cut(s) 145, 166, 378, 445, 467, 629, 793, 1079, 1414
AluI AGCT 9 cut(s) 145, 166, 378, 445, 467, 629, 793, 1079, 1414
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 4 cut(s) 823, 836, 858, 1082
Alw44I GTGCAC 1 cut(s) 293
AlwI GGATC 4 cut(s) 224, 335, 732, 842
AlwNI CAGNNNCTG 1 cut(s) 233
Aor51HI AGCGCT 1 cut(s) 1050
AoxI GGCC 6 cut(s) 74, 994, 1151, 1314, 1327, 1474
ApaLI GTGCAC 1 cut(s) 293
ApeKI GCWGC 8 cut(s) 20, 145, 467, 626, 887, 1028, 1076, 1382
ApoI RAATTY 3 cut(s) 1307, 1335, 1500
AseI ATTAAT 1 cut(s) 743
AsiGI ACCGGT 1 cut(s) 61
Asp700I GAANNNNTTC 1 cut(s) 1248
AspLEI GCGC 1 cut(s) 1051
AspS9I GGNCC 1 cut(s) 1328
AsuHPI GGTGA 3 cut(s) 659, 1198, 1244
BaeGI GKGCMC 1 cut(s) 297
BalI TGGCCA 1 cut(s) 1153
BanI GGYRCC 1 cut(s) 560
BbsI GAAGAC 1 cut(s) 374
Bbv12I GWGCWC 1 cut(s) 297
BbvI GCAGC 8 cut(s) 7, 132, 454, 638, 874, 1040, 1088, 1369
BccI CCATC 4 cut(s) 335, 1151, 1257, 1444
BceAI ACGGC 1 cut(s) 61
BciT130I CCWGG 2 cut(s) 823, 1313
BciVI GTATCC 1 cut(s) 602
BcoDI GTCTC 4 cut(s) 823, 836, 858, 1082
BfaI CTAG 1 cut(s) 557
BfmI CTRYAG 1 cut(s) 1354
BfoI RGCGCY 1 cut(s) 1052
BfuI GTATCC 1 cut(s) 602
BglII AGATCT 1 cut(s) 1374
BisI GCNGC 9 cut(s) 21, 146, 356, 468, 627, 888, 1029, 1077, 1383
BlsI GCNGC 9 cut(s) 22, 147, 357, 469, 628, 889, 1030, 1078, 1384
BmcAI AGTACT 1 cut(s) 857
Bme1390I CCNGG 2 cut(s) 823, 1313
BmgT120I GGNCC 1 cut(s) 1328
BmiI GGNNCC 1 cut(s) 562
BmrFI CCNGG 2 cut(s) 823, 1313
BmsI GCATC 4 cut(s) 367, 483, 1228, 1499
BpiI GAAGAC 1 cut(s) 374
BpmI CTGGAG 1 cut(s) 805
BpuEI CTTGAG 2 cut(s) 239, 880
BsaAI YACGTR 1 cut(s) 292
BsaBI GATNNNNATC 1 cut(s) 1373
BsaJI CCNNGG 1 cut(s) 519
BsaWI WCCGGW 2 cut(s) 61, 594
BsaXI ACNNNNNCTCC 4 cut(s) 276, 306, 803, 833
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse118I RCCGGY 3 cut(s) 61, 890, 1325
Bse3DI GCAATG 1 cut(s) 702
Bse8I GATNNNNATC 1 cut(s) 1373
BseBI CCWGG 2 cut(s) 823, 1313
BseDI CCNNGG 1 cut(s) 519
BseGI GGATG 1 cut(s) 346
BseJI GATNNNNATC 1 cut(s) 1373
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMI GCAATG 1 cut(s) 702
BseMII CTCAG 3 cut(s) 153, 1108, 1429
BseSI GKGCMC 1 cut(s) 297
BseXI GCAGC 8 cut(s) 7, 132, 454, 638, 874, 1040, 1088, 1369
BsgI GTGCAG 2 cut(s) 6, 131
BshFI GGCC 6 cut(s) 76, 996, 1153, 1316, 1329, 1476
BshNI GGYRCC 1 cut(s) 560
BshTI ACCGGT 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 297
BsiSI CCGG 5 cut(s) 62, 108, 595, 891, 1326
BslI CCNNNNNNNGG 1 cut(s) 107
BsmAI GTCTC 4 cut(s) 823, 836, 858, 1082
BsmBI CGTCTC 2 cut(s) 823, 1082
BsmI GAATGC 1 cut(s) 1126
BsnI GGCC 6 cut(s) 76, 996, 1153, 1316, 1329, 1476
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 7 cut(s) 229, 327, 553, 663, 724, 847, 1374
BspACI CCGC 1 cut(s) 355
BspANI GGCC 6 cut(s) 76, 996, 1153, 1316, 1329, 1476
BspCNI CTCAG 3 cut(s) 154, 1107, 1428
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 1 cut(s) 562
BspPI GGATC 4 cut(s) 224, 335, 732, 842
BspT107I GGYRCC 1 cut(s) 560
BsrDI GCAATG 1 cut(s) 702
BsrFI RCCGGY 3 cut(s) 61, 890, 1325
BssAI RCCGGY 3 cut(s) 61, 890, 1325
BssECI CCNNGG 1 cut(s) 519
BssMI GATC 7 cut(s) 229, 327, 553, 663, 724, 847, 1374
BssT1I CCWWGG 1 cut(s) 519
Bst2UI CCWGG 2 cut(s) 823, 1313
Bst4CI ACNGT 2 cut(s) 672, 1111
Bst6I CTCTTC 1 cut(s) 1239
BstAPI GCANNNNNTGC 1 cut(s) 233
BstBAI YACGTR 1 cut(s) 292
BstC8I GCNNGC 6 cut(s) 168, 172, 447, 451, 892, 1327
BstDEI CTNAG 5 cut(s) 162, 401, 701, 1094, 1415
BstF5I GGATG 1 cut(s) 346
BstH2I RGCGCY 1 cut(s) 1052
BstHHI GCGC 1 cut(s) 1051
BstKTI GATC 7 cut(s) 232, 330, 556, 666, 727, 850, 1377
BstMAI GTCTC 4 cut(s) 823, 836, 858, 1082
BstMBI GATC 7 cut(s) 229, 327, 553, 663, 724, 847, 1374
BstMWI GCNNNNNNNGC 4 cut(s) 233, 614, 623, 1322
BstNI CCWGG 2 cut(s) 823, 1313
BstNSI RCATGY 1 cut(s) 174
BstSCI CCNGG 2 cut(s) 821, 1311
BstSFI CTRYAG 1 cut(s) 1354
BstSLI GKGCMC 1 cut(s) 297
BstV1I GCAGC 8 cut(s) 7, 132, 454, 638, 874, 1040, 1088, 1369
BstV2I GAAGAC 1 cut(s) 374
BstX2I RGATCY 3 cut(s) 229, 327, 1374
BstXI CCANNNNNNTGG 1 cut(s) 1263
BstYI RGATCY 3 cut(s) 229, 327, 1374
BsuI GTATCC 1 cut(s) 602
BsuRI GGCC 6 cut(s) 76, 996, 1153, 1316, 1329, 1476
BtsCI GGATG 1 cut(s) 346
BtsI GCAGTG 2 cut(s) 15, 421
BtsIMutI CAGTG 4 cut(s) 15, 159, 421, 1423
Cac8I GCNNGC 6 cut(s) 168, 172, 447, 451, 892, 1327
CaiI CAGNNNCTG 1 cut(s) 233
CciI TCATGA 1 cut(s) 460
CfoI GCGC 1 cut(s) 1051
Cfr10I RCCGGY 3 cut(s) 61, 890, 1325
Cfr13I GGNCC 1 cut(s) 1328
CseI GACGC 2 cut(s) 623, 1099
Csp6I GTAC 3 cut(s) 289, 687, 856
CspAI ACCGGT 1 cut(s) 61
CviAII CATG 6 cut(s) 171, 461, 565, 921, 1073, 1487
CviQI GTAC 3 cut(s) 289, 687, 856
DdeI CTNAG 5 cut(s) 162, 401, 701, 1094, 1415
DpnI GATC 7 cut(s) 231, 329, 555, 665, 726, 849, 1376
DpnII GATC 7 cut(s) 229, 327, 553, 663, 724, 847, 1374
DraI TTTAAA 3 cut(s) 130, 1306, 1395
EaeI YGGCCR 2 cut(s) 74, 1151
Eam1104I CTCTTC 1 cut(s) 1239
EarI CTCTTC 1 cut(s) 1239
Eco130I CCWWGG 1 cut(s) 519
Eco147I AGGCCT 2 cut(s) 996, 1476
Eco32I GATATC 1 cut(s) 652
Eco47III AGCGCT 1 cut(s) 1050
Eco57I CTGAAG 1 cut(s) 1062
EcoRII CCWGG 2 cut(s) 821, 1311
EcoRV GATATC 1 cut(s) 652
EcoT14I CCWWGG 1 cut(s) 519
EcoT22I ATGCAT 1 cut(s) 1492
ErhI CCWWGG 1 cut(s) 519
Esp3I CGTCTC 2 cut(s) 823, 1082
FaeI CATG 6 cut(s) 174, 464, 568, 924, 1076, 1490
FalI AAGNNNNNCTT 4 cut(s) 248, 280, 1035, 1067
FatI CATG 6 cut(s) 170, 460, 564, 920, 1072, 1486
FauNDI CATATG 1 cut(s) 711
Fnu4HI GCNGC 9 cut(s) 21, 146, 356, 468, 627, 888, 1029, 1077, 1383
FokI GGATG 1 cut(s) 353
Fsp4HI GCNGC 9 cut(s) 21, 146, 356, 468, 627, 888, 1029, 1077, 1383
FspBI CTAG 1 cut(s) 557
GlaI GCGC 1 cut(s) 1050
GluI GCNGC 9 cut(s) 21, 146, 356, 468, 627, 888, 1029, 1077, 1383
GsuI CTGGAG 1 cut(s) 805
HaeII RGCGCY 1 cut(s) 1052
HaeIII GGCC 6 cut(s) 76, 996, 1153, 1316, 1329, 1476
HapII CCGG 5 cut(s) 62, 108, 595, 891, 1326
HgaI GACGC 2 cut(s) 623, 1099
HhaI GCGC 1 cut(s) 1051
Hin1II CATG 6 cut(s) 174, 464, 568, 924, 1076, 1490
Hin6I GCGC 1 cut(s) 1049
HinP1I GCGC 1 cut(s) 1049
HindIII AAGCTT 1 cut(s) 443
HinfI GANTC 5 cut(s) 482, 524, 538, 765, 1098
HpaII CCGG 5 cut(s) 62, 108, 595, 891, 1326
HphI GGTGA 3 cut(s) 659, 1198, 1244
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 4 cut(s) 310, 363, 1097, 1141
Hpy8I GTNNAC 1 cut(s) 295
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 1 cut(s) 1327
HpyCH4III ACNGT 2 cut(s) 672, 1111
HpyCH4IV ACGT 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 4 cut(s) 233, 614, 623, 1322
HpyF3I CTNAG 5 cut(s) 162, 401, 701, 1094, 1415
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 6 cut(s) 174, 464, 568, 924, 1076, 1490
HspAI GCGC 1 cut(s) 1049
KroI GCCGGC 2 cut(s) 890, 1325
KroNI GCCGGC 2 cut(s) 892, 1327
Kzo9I GATC 7 cut(s) 229, 327, 553, 663, 724, 847, 1374
Lsp1109I GCAGC 8 cut(s) 7, 132, 454, 638, 874, 1040, 1088, 1369
LweI GCATC 4 cut(s) 367, 483, 1228, 1499
MaeI CTAG 1 cut(s) 557
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 3 cut(s) 476, 1418, 1453
MalI GATC 7 cut(s) 231, 329, 555, 665, 726, 849, 1376
MboI GATC 7 cut(s) 229, 327, 553, 663, 724, 847, 1374
MfeI CAATTG 1 cut(s) 1181
MflI RGATCY 3 cut(s) 229, 327, 1374
MhlI GDGCHC 1 cut(s) 297
MlsI TGGCCA 1 cut(s) 1153
MluNI TGGCCA 1 cut(s) 1153
MlyI GAGTC 2 cut(s) 774, 1092
MmeI TCCRAC 1 cut(s) 1219
MnlI CCTC 5 cut(s) 311, 357, 807, 884, 1119
Mox20I TGGCCA 1 cut(s) 1153
Mph1103I ATGCAT 1 cut(s) 1492
MroNI GCCGGC 2 cut(s) 890, 1325
MroXI GAANNNNTTC 1 cut(s) 1248
MscI TGGCCA 1 cut(s) 1153
MseI TTAA 6 cut(s) 129, 743, 1053, 1305, 1394, 1479
Msp20I TGGCCA 1 cut(s) 1153
MspI CCGG 5 cut(s) 62, 108, 595, 891, 1326
MspR9I CCNGG 2 cut(s) 823, 1313
MunI CAATTG 1 cut(s) 1181
Mva1269I GAATGC 1 cut(s) 1126
MvaI CCWGG 2 cut(s) 823, 1313
MwoI GCNNNNNNNGC 4 cut(s) 233, 614, 623, 1322
NaeI GCCGGC 2 cut(s) 892, 1327
NdeI CATATG 1 cut(s) 711
NdeII GATC 7 cut(s) 229, 327, 553, 663, 724, 847, 1374
NgoMIV GCCGGC 2 cut(s) 890, 1325
NlaIII CATG 6 cut(s) 174, 464, 568, 924, 1076, 1490
NlaIV GGNNCC 1 cut(s) 562
NmuCI GTSAC 3 cut(s) 476, 1418, 1453
NsiI ATGCAT 1 cut(s) 1492
NspI RCATGY 1 cut(s) 174
PaeI GCATGC 1 cut(s) 174
PagI TCATGA 1 cut(s) 460
PceI AGGCCT 2 cut(s) 996, 1476
PctI GAATGC 1 cut(s) 1126
PdiI GCCGGC 2 cut(s) 892, 1327
PdmI GAANNNNTTC 1 cut(s) 1248
PfeI GAWTC 3 cut(s) 482, 524, 538
PflFI GACNNNGTC 2 cut(s) 815, 869
PinAI ACCGGT 1 cut(s) 61
PkrI GCNGC 9 cut(s) 22, 147, 357, 469, 628, 889, 1030, 1078, 1384
PleI GAGTC 2 cut(s) 773, 1092
PpsI GAGTC 2 cut(s) 773, 1092
Ppu21I YACGTR 1 cut(s) 292
PshBI ATTAAT 1 cut(s) 743
Psp6I CCWGG 2 cut(s) 821, 1311
PspGI CCWGG 2 cut(s) 821, 1311
PspN4I GGNNCC 1 cut(s) 562
PspPI GGNCC 1 cut(s) 1328
PsrI GAACNNNNNNTAC 2 cut(s) 77, 109
PstNI CAGNNNCTG 1 cut(s) 233
PsuI RGATCY 3 cut(s) 229, 327, 1374
PsyI GACNNNGTC 2 cut(s) 815, 869
RsaI GTAC 3 cut(s) 290, 688, 857
RsaNI GTAC 3 cut(s) 289, 687, 856
SaqAI TTAA 6 cut(s) 129, 743, 1053, 1305, 1394, 1479
SatI GCNGC 9 cut(s) 21, 146, 356, 468, 627, 888, 1029, 1077, 1383
Sau3AI GATC 7 cut(s) 229, 327, 553, 663, 724, 847, 1374
Sau96I GGNCC 1 cut(s) 1328
ScaI AGTACT 1 cut(s) 857
SchI GAGTC 2 cut(s) 774, 1092
ScrFI CCNGG 2 cut(s) 823, 1313
SduI GDGCHC 1 cut(s) 297
SfaNI GCATC 4 cut(s) 367, 483, 1228, 1499
SfcI CTRYAG 1 cut(s) 1354
SmiI ATTTAAAT 1 cut(s) 130
SmlI CTYRAG 2 cut(s) 254, 859
SmoI CTYRAG 2 cut(s) 254, 859
SphI GCATGC 1 cut(s) 174
SseBI AGGCCT 2 cut(s) 996, 1476
SsiI CCGC 1 cut(s) 355
SspMI CTAG 1 cut(s) 557
StuI AGGCCT 2 cut(s) 996, 1476
StyD4I CCNGG 2 cut(s) 821, 1311
StyI CCWWGG 1 cut(s) 519
SwaI ATTTAAAT 1 cut(s) 130
TaaI ACNGT 2 cut(s) 672, 1111
TaiI ACGT 1 cut(s) 294
TaqI TCGA 2 cut(s) 552, 1252
TatI WGTACW 1 cut(s) 855
TauI GCSGC 1 cut(s) 358
TfiI GAWTC 3 cut(s) 482, 524, 538
Tru1I TTAA 6 cut(s) 129, 743, 1053, 1305, 1394, 1479
Tru9I TTAA 6 cut(s) 129, 743, 1053, 1305, 1394, 1479
TscAI CASTG 4 cut(s) 22, 166, 421, 1423
TseFI GTSAC 3 cut(s) 476, 1418, 1453
TseI GCWGC 8 cut(s) 20, 145, 467, 626, 887, 1028, 1076, 1382
Tsp45I GTSAC 3 cut(s) 476, 1418, 1453
TspRI CASTG 4 cut(s) 22, 166, 421, 1423
Tth111I GACNNNGTC 2 cut(s) 815, 869
VneI GTGCAC 1 cut(s) 293
VspI ATTAAT 1 cut(s) 743
XapI RAATTY 3 cut(s) 1307, 1335, 1500
XceI RCATGY 1 cut(s) 174
XmnI GAANNNNTTC 1 cut(s) 1248
XspI CTAG 1 cut(s) 557
ZrmI AGTACT 1 cut(s) 857
Zsp2I ATGCAT 1 cut(s) 1492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.