Rw6G018520

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001021
Physical Location & Seq
Reverse (-)
36763311 .. 36768265
4955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G018520.1

Sequence Viewer

Length: 636 bp
ATGGCGGACAGCCTCTGGAACCGTCAGCGGCAACTGCTTCCTTCCGGTGGCGTTAAACGACCTCGTTCTGACCACGACCTCCCAATGTCTGGTCTGTATTCAGGTCATGAGATGCGTAGCTATTTAGCACGGGATGATGATCTTGGTGGTCCTAGGGCTGTAAAGGATACAAAATCAATTGGATCAGCATATGACCGTTATCTTCAAAATGGGAAGCAAGTGTCTTCAGATACCATGGTTGGAGTTGCATTGGGGAGGCCTGTCAGTGGTGGAATGGCTGATCATTCTATGATTGGTCGCCCTGGGGCTGTTGCTTCGGATTTAATTAGTGGTCGAAATATTAGTCTTGCTCAGCTCCCAGTGGATGCAATGCCTAGACTAGCACCTGGACGTGAAACAGCTCCTTTACCCCCAGATGCTACCAACACTTTATACATTGAAGGACTTCCTCCTGACAGCACGAGGAGGGAAGTAGCTCGTATCCTTTATGATGTTTTCATGCTGTGTGAGAATTGTAGGGATCTTTCTTTTCCCCGTCTTATTGTTTTAACTCAATGGTTCTGTAAAAAAATCTCTCACTTGATTCTTTATCCTTTACATCGTGTTAGATATTTTTCGCCCCTTTGTGGGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010494 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010862 GO:0016070 GO:0016071 GO:0017069 GO:0019219 GO:0019220 GO:0019222 GO:0023051 GO:0023056 GO:0030532 GO:0030619 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0034641 GO:0035613 GO:0035614 GO:0035770 GO:0036464 GO:0042325 GO:0042327 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0045937 GO:0046483 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0060255 GO:0060390 GO:0060391 GO:0060393 GO:0065007 GO:0070013 GO:0070717 GO:0071704 GO:0080090 GO:0090092 GO:0090100 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

211

Amino Acids

23.34

Weight (kDa)

9.13

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 89
AciI CCGC 2 cut(s) 5, 28
AclWI GGATC 2 cut(s) 190, 528
AcuI CTGAAG 1 cut(s) 210
AfiI CCNNNNNNNGG 5 cut(s) 47, 89, 266, 626, 627
AgsI TTSAA 2 cut(s) 206, 440
AjiI CACGTC 1 cut(s) 392
AjnI CCWGG 2 cut(s) 301, 385
AluBI AGCT 4 cut(s) 120, 355, 401, 476
AluI AGCT 4 cut(s) 120, 355, 401, 476
AlwI GGATC 2 cut(s) 190, 528
AlwNI CAGNNNCTG 1 cut(s) 15
AoxI GGCC 1 cut(s) 257
ArsI GACNNNNNNTTYG 2 cut(s) 328, 360
Asp700I GAANNNNTTC 1 cut(s) 444
AspA2I CCTAGG 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 149
AvaII GGWCC 1 cut(s) 149
AvrII CCTAGG 1 cut(s) 152
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
BauI CACGAG 1 cut(s) 460
BbsI GAAGAC 1 cut(s) 216
BciT130I CCWGG 2 cut(s) 303, 387
BciVI GTATCC 2 cut(s) 160, 491
BclI TGATCA 1 cut(s) 280
BfaI CTAG 3 cut(s) 153, 375, 380
BfuI GTATCC 2 cut(s) 160, 491
BisI GCNGC 1 cut(s) 29
BlnI CCTAGG 1 cut(s) 152
BlpI GCTNAGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 30
Bme1390I CCNGG 2 cut(s) 303, 387
Bme18I GGWCC 1 cut(s) 149
BmgBI CACGTC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 20
BmrFI CCNGG 2 cut(s) 303, 387
BmrI ACTGGG 1 cut(s) 353
BmsI GCATC 3 cut(s) 102, 355, 406
BmuI ACTGGG 1 cut(s) 353
BpiI GAAGAC 1 cut(s) 216
Bpu1102I GCTNAGC 1 cut(s) 351
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 4 cut(s) 152, 234, 301, 302
BsaWI WCCGGW 1 cut(s) 44
Bsc4I CCNNNNNNNGG 5 cut(s) 47, 89, 266, 626, 627
Bse1I ACTGG 1 cut(s) 359
Bse3DI GCAATG 1 cut(s) 375
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 2 cut(s) 303, 387
BseDI CCNNGG 4 cut(s) 152, 234, 301, 302
BseGI GGATG 2 cut(s) 139, 370
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 5 cut(s) 47, 89, 266, 626, 627
BseMI GCAATG 1 cut(s) 375
BseMII CTCAG 1 cut(s) 365
BseNI ACTGG 1 cut(s) 359
BseRI GAGGAG 1 cut(s) 478
BshFI GGCC 1 cut(s) 259
BsiSI CCGG 1 cut(s) 45
BslI CCNNNNNNNGG 5 cut(s) 47, 89, 266, 626, 627
BsnI GGCC 1 cut(s) 259
Bsp143I GATC 4 cut(s) 139, 182, 280, 520
Bsp1720I GCTNAGC 1 cut(s) 351
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 2 cut(s) 5, 28
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 1 cut(s) 364
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 20
BspPI GGATC 2 cut(s) 190, 528
BsrDI GCAATG 1 cut(s) 375
BsrI ACTGG 1 cut(s) 359
BssECI CCNNGG 4 cut(s) 152, 234, 301, 302
BssMI GATC 4 cut(s) 139, 182, 280, 520
BssSI CACGAG 1 cut(s) 460
BssT1I CCWWGG 2 cut(s) 152, 234
Bst2BI CACGAG 1 cut(s) 460
Bst2UI CCWGG 2 cut(s) 303, 387
Bst4CI ACNGT 2 cut(s) 23, 197
BstDEI CTNAG 1 cut(s) 351
BstDSI CCRYGG 1 cut(s) 234
BstF5I GGATG 2 cut(s) 139, 370
BstKTI GATC 4 cut(s) 142, 185, 283, 523
BstMBI GATC 4 cut(s) 139, 182, 280, 520
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNI CCWGG 2 cut(s) 303, 387
BstSCI CCNGG 2 cut(s) 301, 385
BstV2I GAAGAC 1 cut(s) 216
BstX2I RGATCY 1 cut(s) 520
BstYI RGATCY 1 cut(s) 520
BsuI GTATCC 2 cut(s) 160, 491
BsuRI GGCC 1 cut(s) 259
BtgI CCRYGG 1 cut(s) 234
BtrI CACGTC 1 cut(s) 392
BtsCI GGATG 2 cut(s) 139, 370
BtsIMutI CAGTG 2 cut(s) 271, 366
CaiI CAGNNNCTG 1 cut(s) 15
CciI TCATGA 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 149
CviAII CATG 3 cut(s) 107, 235, 499
CviJI RGCY 9 cut(s) 12, 120, 158, 259, 278, 308, 355, 401, 476
CviKI_1 RGCY 9 cut(s) 12, 120, 158, 259, 278, 308, 355, 401, 476
DdeI CTNAG 1 cut(s) 351
DpnI GATC 4 cut(s) 141, 184, 282, 522
DpnII GATC 4 cut(s) 139, 182, 280, 520
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 152, 234
Eco147I AGGCCT 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 210
EcoRII CCWGG 2 cut(s) 301, 385
EcoT14I CCWWGG 2 cut(s) 152, 234
ErhI CCWWGG 2 cut(s) 152, 234
FaeI CATG 3 cut(s) 110, 238, 502
FaiI YATR 9 cut(s) 108, 190, 192, 236, 290, 433, 489, 500, 634
FatI CATG 3 cut(s) 106, 234, 498
FauNDI CATATG 1 cut(s) 190
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 1 cut(s) 29
FokI GGATG 2 cut(s) 146, 377
Fsp4HI GCNGC 1 cut(s) 29
FspBI CTAG 3 cut(s) 153, 375, 380
GluI GCNGC 1 cut(s) 29
HaeIII GGCC 1 cut(s) 259
HapII CCGG 1 cut(s) 45
Hin1II CATG 3 cut(s) 110, 238, 502
HinfI GANTC 1 cut(s) 583
HpaII CCGG 1 cut(s) 45
Hpy188I TCNGA 3 cut(s) 70, 229, 319
Hpy188III TCNNGA 3 cut(s) 16, 107, 452
HpyAV CCTTC 2 cut(s) 51, 434
HpyCH4III ACNGT 2 cut(s) 23, 197
HpyCH4IV ACGT 1 cut(s) 391
HpyCH4V TGCA 2 cut(s) 248, 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 1 cut(s) 351
HpySE526I ACGT 1 cut(s) 391
Hsp92II CATG 3 cut(s) 110, 238, 502
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 4 cut(s) 139, 182, 280, 520
LmnI GCTCC 2 cut(s) 360, 406
LweI GCATC 3 cut(s) 102, 355, 406
MaeI CTAG 3 cut(s) 153, 375, 380
MaeII ACGT 1 cut(s) 391
MalI GATC 4 cut(s) 141, 184, 282, 522
MboI GATC 4 cut(s) 139, 182, 280, 520
MboII GAAGA 2 cut(s) 194, 216
MfeI CAATTG 1 cut(s) 177
MflI RGATCY 1 cut(s) 520
MluCI AATT 3 cut(s) 177, 324, 511
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 7 cut(s) 23, 72, 89, 249, 456, 459, 459
MroXI GAANNNNTTC 1 cut(s) 444
MseI TTAA 3 cut(s) 54, 323, 548
MspA1I CMGCKG 1 cut(s) 28
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 2 cut(s) 303, 387
MunI CAATTG 1 cut(s) 177
MvaI CCWGG 2 cut(s) 303, 387
MwoI GCNNNNNNNGC 1 cut(s) 34
NcoI CCATGG 1 cut(s) 234
NdeI CATATG 1 cut(s) 190
NdeII GATC 4 cut(s) 139, 182, 280, 520
NlaIII CATG 3 cut(s) 110, 238, 502
NlaIV GGNNCC 1 cut(s) 20
PagI TCATGA 1 cut(s) 106
PasI CCCWGGG 1 cut(s) 302
PceI AGGCCT 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 1 cut(s) 583
PflMI CCANNNNNTGG 1 cut(s) 89
PkrI GCNGC 1 cut(s) 30
Psp6I CCWGG 2 cut(s) 301, 385
PspGI CCWGG 2 cut(s) 301, 385
PspN4I GGNNCC 1 cut(s) 20
PspPI GGNCC 1 cut(s) 149
PstNI CAGNNNCTG 1 cut(s) 15
PsuI RGATCY 1 cut(s) 520
SaqAI TTAA 3 cut(s) 54, 323, 548
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 4 cut(s) 139, 182, 280, 520
Sau96I GGNCC 1 cut(s) 149
ScrFI CCNGG 2 cut(s) 303, 387
SetI ASST 9 cut(s) 64, 81, 106, 122, 357, 388, 394, 403, 478
SfaNI GCATC 3 cut(s) 102, 355, 406
SinI GGWCC 1 cut(s) 149
Sse9I AATT 3 cut(s) 177, 324, 511
SseBI AGGCCT 1 cut(s) 259
SsiI CCGC 2 cut(s) 5, 28
SspI AATATT 1 cut(s) 340
SspMI CTAG 3 cut(s) 153, 375, 380
StuI AGGCCT 1 cut(s) 259
StyD4I CCNGG 2 cut(s) 301, 385
StyI CCWWGG 2 cut(s) 152, 234
TaaI ACNGT 2 cut(s) 23, 197
TaiI ACGT 1 cut(s) 394
TaqI TCGA 1 cut(s) 334
TasI AATT 3 cut(s) 177, 324, 511
TauI GCSGC 1 cut(s) 31
TfiI GAWTC 1 cut(s) 583
Tru1I TTAA 3 cut(s) 54, 323, 548
Tru9I TTAA 3 cut(s) 54, 323, 548
TscAI CASTG 2 cut(s) 271, 366
TspDTI ATGAA 1 cut(s) 487
TspRI CASTG 2 cut(s) 271, 366
Van91I CCANNNNNTGG 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 149
XmaJI CCTAGG 1 cut(s) 152
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 3 cut(s) 153, 375, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.