MD10G1021600.v1.1

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0001021
Physical Location & Seq
Forward (+)
2682695 .. 2684215
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1021600.v1.1.491

Sequence Viewer

Length: 447 bp
ATGAGGGCCAGTCCTGGAGCTATGTCTTCTGATCTATTAACATATGGTCGAAATATGAATCTTATTAATCAGCTCCCAGTTGATGCAATGCCTAGGCGTGGACGTGAAACAGTTCCTTTACCTCTGGATGCATCCAGCACTTTATATGTTGAAGGACTTCCTCCTGACAGCACAATGAGGGAAGTAGCTCATATCTTTCGTCATTTTGTGGGATACAAAGCAGTGAGGCTTGTGAACGAAGAGTCAGGTTTGTCCATAATGCAGCGTGGCGGGGATCCTCTTATTCTTTGTTTTGTGGATTTTGAAAATCCAACCCATGCAGCAACTGCTCTGAGTGCCTTGCAAGGTTATGAAATGGATGAACAGGCTCCTGATTCTAATTACTTGCGGCTGCAGTTTTATCAGTTCCCGGATCCCAGGTCAAGACCTGGCCGTAACAAGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010494 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010862 GO:0016070 GO:0016071 GO:0017069 GO:0019219 GO:0019220 GO:0019222 GO:0023051 GO:0023056 GO:0030532 GO:0030619 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0034641 GO:0035613 GO:0035614 GO:0035770 GO:0036464 GO:0042325 GO:0042327 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0045937 GO:0046483 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0060255 GO:0060390 GO:0060391 GO:0060393 GO:0065007 GO:0070013 GO:0070717 GO:0071704 GO:0080090 GO:0090092 GO:0090100 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

149

Amino Acids

16.53

Weight (kDa)

5.89

Isoelectric Point (pI)

51.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 48 - 121 6.6e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 270, 388
AclWI GGATC 4 cut(s) 269, 282, 407, 420
AcoI YGGCCR 1 cut(s) 430
AfiI CCNNNNNNNGG 2 cut(s) 98, 439
AgsI TTSAA 2 cut(s) 152, 305
AjiI CACGTC 1 cut(s) 104
AjnI CCWGG 3 cut(s) 13, 416, 427
AluBI AGCT 3 cut(s) 20, 73, 188
AluI AGCT 3 cut(s) 20, 73, 188
AlwI GGATC 4 cut(s) 269, 282, 407, 420
AlwNI CAGNNNCTG 1 cut(s) 326
AoxI GGCC 2 cut(s) 6, 430
ApeKI GCWGC 3 cut(s) 262, 320, 391
AseI ATTAAT 1 cut(s) 66
Asp700I GAANNNNTTC 2 cut(s) 111, 156
AspA2I CCTAGG 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 6
AsuC2I CCSGG 1 cut(s) 410
AvrII CCTAGG 1 cut(s) 92
BamHI GGATCC 2 cut(s) 274, 412
BbsI GAAGAC 1 cut(s) 18
BbvI GCAGC 3 cut(s) 274, 332, 378
BceAI ACGGC 1 cut(s) 417
BciT130I CCWGG 3 cut(s) 15, 418, 429
BciVI GTATCC 1 cut(s) 206
BcnI CCSGG 1 cut(s) 410
BfaI CTAG 1 cut(s) 93
BfmI CTRYAG 1 cut(s) 392
BfuI GTATCC 1 cut(s) 206
BisI GCNGC 4 cut(s) 263, 321, 389, 392
BlnI CCTAGG 1 cut(s) 92
BlsI GCNGC 4 cut(s) 264, 322, 390, 393
Bme1390I CCNGG 4 cut(s) 15, 410, 418, 429
BmgBI CACGTC 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 6
BmiI GGNNCC 3 cut(s) 276, 369, 414
BmrFI CCNGG 4 cut(s) 15, 410, 418, 429
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 3 cut(s) 73, 118, 140
BmuI ACTGGG 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 18
BpmI CTGGAG 1 cut(s) 36
BpuMI CCSGG 1 cut(s) 410
BsaJI CCNNGG 2 cut(s) 92, 416
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 439
Bse1I ACTGG 2 cut(s) 9, 77
Bse3DI GCAATG 1 cut(s) 93
BseBI CCWGG 3 cut(s) 15, 418, 429
BseDI CCNNGG 2 cut(s) 92, 416
BseGI GGATG 3 cut(s) 131, 133, 364
BseLI CCNNNNNNNGG 2 cut(s) 98, 439
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 2 cut(s) 9, 77
BseXI GCAGC 3 cut(s) 274, 332, 378
BshFI GGCC 2 cut(s) 8, 432
BsiSI CCGG 1 cut(s) 410
BslI CCNNNNNNNGG 2 cut(s) 98, 439
BsnI GGCC 2 cut(s) 8, 432
Bsp143I GATC 3 cut(s) 31, 274, 412
BspACI CCGC 2 cut(s) 270, 388
BspANI GGCC 2 cut(s) 8, 432
BspCNI CTCAG 1 cut(s) 324
BspLI GGNNCC 3 cut(s) 276, 369, 414
BspMAI CTGCAG 1 cut(s) 396
BspPI GGATC 4 cut(s) 269, 282, 407, 420
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 2 cut(s) 9, 77
BssECI CCNNGG 2 cut(s) 92, 416
BssMI GATC 3 cut(s) 31, 274, 412
BssT1I CCWWGG 1 cut(s) 92
Bst2UI CCWGG 3 cut(s) 15, 418, 429
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 234
BstAPI GCANNNNNTGC 1 cut(s) 326
BstDEI CTNAG 1 cut(s) 332
BstF5I GGATG 3 cut(s) 131, 133, 364
BstKTI GATC 3 cut(s) 34, 277, 415
BstMBI GATC 3 cut(s) 31, 274, 412
BstMWI GCNNNNNNNGC 2 cut(s) 326, 335
BstNI CCWGG 3 cut(s) 15, 418, 429
BstSCI CCNGG 4 cut(s) 13, 408, 416, 427
BstSFI CTRYAG 1 cut(s) 392
BstV1I GCAGC 3 cut(s) 274, 332, 378
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 2 cut(s) 274, 412
BstYI RGATCY 2 cut(s) 274, 412
BsuI GTATCC 1 cut(s) 206
BsuRI GGCC 2 cut(s) 8, 432
BtrI CACGTC 1 cut(s) 104
BtsCI GGATG 3 cut(s) 131, 133, 364
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 228
CaiI CAGNNNCTG 1 cut(s) 326
Cfr13I GGNCC 1 cut(s) 6
CviAII CATG 1 cut(s) 317
CviJI RGCY 8 cut(s) 8, 20, 73, 188, 229, 368, 391, 432
CviKI_1 RGCY 8 cut(s) 8, 20, 73, 188, 229, 368, 391, 432
DdeI CTNAG 1 cut(s) 332
DpnI GATC 3 cut(s) 33, 276, 414
DpnII GATC 3 cut(s) 31, 274, 412
EaeI YGGCCR 1 cut(s) 430
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 92
EcoRII CCWGG 3 cut(s) 13, 416, 427
EcoT14I CCWWGG 1 cut(s) 92
EcoT22I ATGCAT 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 92
FaeI CATG 1 cut(s) 320
FatI CATG 1 cut(s) 316
FauI CCCGC 1 cut(s) 263
FauNDI CATATG 1 cut(s) 43
Fnu4HI GCNGC 4 cut(s) 263, 321, 389, 392
FokI GGATG 3 cut(s) 118, 140, 371
Fsp4HI GCNGC 4 cut(s) 263, 321, 389, 392
FspBI CTAG 1 cut(s) 93
GluI GCNGC 4 cut(s) 263, 321, 389, 392
GsuI CTGGAG 1 cut(s) 36
HaeIII GGCC 2 cut(s) 8, 432
HapII CCGG 1 cut(s) 410
Hin1II CATG 1 cut(s) 320
HinfI GANTC 3 cut(s) 58, 242, 374
HpaII CCGG 1 cut(s) 410
Hpy166II GTNNAC 2 cut(s) 101, 235
Hpy188I TCNGA 2 cut(s) 31, 333
Hpy188III TCNNGA 4 cut(s) 125, 164, 371, 423
Hpy8I GTNNAC 2 cut(s) 101, 235
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 6 cut(s) 86, 131, 262, 320, 343, 394
HpyF10VI GCNNNNNNNGC 2 cut(s) 326, 335
HpyF3I CTNAG 1 cut(s) 332
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 1 cut(s) 320
Kzo9I GATC 3 cut(s) 31, 274, 412
LmnI GCTCC 3 cut(s) 17, 78, 373
Lsp1109I GCAGC 3 cut(s) 274, 332, 378
LweI GCATC 3 cut(s) 73, 118, 140
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 1 cut(s) 434
MalI GATC 3 cut(s) 33, 276, 414
MboI GATC 3 cut(s) 31, 274, 412
MboII GAAGA 2 cut(s) 18, 251
MflI RGATCY 2 cut(s) 274, 412
MluCI AATT 1 cut(s) 379
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 335
MnlI CCTC 5 cut(s) 132, 171, 171, 219, 288
Mph1103I ATGCAT 1 cut(s) 133
MroXI GAANNNNTTC 2 cut(s) 111, 156
MseI TTAA 2 cut(s) 38, 66
MspI CCGG 1 cut(s) 410
MspR9I CCNGG 4 cut(s) 15, 410, 418, 429
MvaI CCWGG 3 cut(s) 15, 418, 429
MwoI GCNNNNNNNGC 2 cut(s) 326, 335
NciI CCSGG 1 cut(s) 410
NdeI CATATG 1 cut(s) 43
NdeII GATC 3 cut(s) 31, 274, 412
NlaIII CATG 1 cut(s) 320
NlaIV GGNNCC 3 cut(s) 276, 369, 414
NsiI ATGCAT 1 cut(s) 133
PdmI GAANNNNTTC 2 cut(s) 111, 156
PfeI GAWTC 2 cut(s) 58, 374
PfoI TCCNGGA 2 cut(s) 13, 408
PkrI GCNGC 4 cut(s) 264, 322, 390, 393
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PshBI ATTAAT 1 cut(s) 66
Psp6I CCWGG 3 cut(s) 13, 416, 427
PspGI CCWGG 3 cut(s) 13, 416, 427
PspN4I GGNNCC 3 cut(s) 276, 369, 414
PspPI GGNCC 1 cut(s) 6
PstI CTGCAG 1 cut(s) 396
PstNI CAGNNNCTG 1 cut(s) 326
PsuI RGATCY 2 cut(s) 274, 412
SaqAI TTAA 2 cut(s) 38, 66
SatI GCNGC 4 cut(s) 263, 321, 389, 392
Sau3AI GATC 3 cut(s) 31, 274, 412
Sau96I GGNCC 1 cut(s) 6
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 4 cut(s) 15, 410, 418, 429
SetI ASST 9 cut(s) 22, 75, 106, 124, 190, 250, 349, 422, 430
SfaNI GCATC 3 cut(s) 73, 118, 140
SfcI CTRYAG 1 cut(s) 392
Sse9I AATT 1 cut(s) 379
SsiI CCGC 2 cut(s) 270, 388
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 4 cut(s) 13, 408, 416, 427
StyI CCWWGG 1 cut(s) 92
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 1 cut(s) 106
TaqI TCGA 1 cut(s) 49
TasI AATT 1 cut(s) 379
TauI GCSGC 1 cut(s) 391
TfiI GAWTC 2 cut(s) 58, 374
Tru1I TTAA 2 cut(s) 38, 66
Tru9I TTAA 2 cut(s) 38, 66
TscAI CASTG 1 cut(s) 228
TseI GCWGC 3 cut(s) 262, 320, 391
TspDTI ATGAA 3 cut(s) 71, 366, 375
TspRI CASTG 1 cut(s) 228
VspI ATTAAT 1 cut(s) 66
XmaJI CCTAGG 1 cut(s) 92
XmnI GAANNNNTTC 2 cut(s) 111, 156
XspI CTAG 1 cut(s) 93
Zsp2I ATGCAT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.